Is the rate of insertion and deletion mutation male biased?: Molecular evolutionary analysis of avian and primate sex chromosome sequences

Genetics

Volumn 164, Issue 1, 2003, Pages 259-268

  Sundström, Hannah ^a   Webster, Matthew T ^a   Ellegren, Hans ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CONTROLLED STUDY; CROSSING OVER; DELETION MUTANT; DNA RECOMBINATION; DNA REPLICATION; DNA SEQUENCE; FOWL; GENE INSERTION; GENE LOCUS; GENETIC DISORDER; GENETIC RECOMBINATION; HUMAN; MEIOSIS; MOLECULAR EVOLUTION; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE DEVELOPMENT; PRIMATE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEX CHROMOSOME; SPECIES DIFFERENCE; SPERMATOGENESIS; X CHROMOSOME; Y CHROMOSOME;

ANIMALS; BIRDS; FEMALE; HUMANS; INTRONS; MALE; MOLECULAR SEQUENCE DATA; POINT MUTATION; PRIMATES; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEX CHROMOSOMES;

AVES; GALLIFORMES; PRIMATES;

EID: 0038192193     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. BAUMER, A., F. DUTLY, D. BALMER, M. RIEGEL, T. TUKEL et al., 1998 High level of unequal meiotic crossovers at the origin of the 22q11.2 and 7q11.23 deletions. Hum. Mol. Genet. 7: 887-894.
2. BOHOSSIAN, H. B., H. SKALETSKY and D. C. PAGE, 2000 Unexpectedly similar rates of nucleotide substitution found in male and female hominids. Nature 406: 622-625.
3. CARMICHAEL, A. N., A. K. FRIDOLFSSON, J. HALVERSON and H. ELLEGREN, 2000 Male-biased mutation rates revealed from Z and W chromosome-linked ATP synthase alpha-subunit (ATPSA1) sequences in birds. J. Mol. Evol. 50: 443-447.
4. COMERON, J. M., and M. KRELTMAN, 2000 The correlation between intron length and recombination in Drosophila: dynamic equilibrium between mutational and selective forces. Genetics 156: 1175-1190.
5. CROW, J. F., 1997 The high spontaneous mutation rate: Is it a health risk? Proc. Natl. Acad. Sci. USA 94: 8380-8386.
6. CROW, J. F., 2000a A new study challenges the current belief of a high human male:female mutation ratio. Trends Genet. 16: 525-526.
7. CROW, J. F., 2000b The origins, patterns and implications of human spontaneous mutation. Nat. Rev. Genet. 1: 40-47.
8. EBERSBERGER, I., D. METZLER, C. SCHWARZ and S. PAABO, 2002 Genomewide comparison of DNA sequences between humans and chimpanzees. Am. J. Hum. Genet. 70: 1490-1497.
9. ELLEGREN, H., 2002 Human mutation - blame (mostly) men. Nat. Genet. 31: 9-10.
10. ELLEGREN, H., and A. K. FRIDOLFSSON, 1997 Male-driven evolution of DNA sequences in birds. Nat. Genet. 17: 182-184.
11. FRIDOLFSSON, A.-K., and H. ELLEGREN, 1999 A simple and universal method for sexing non-ratite birds. J. Avian Biol. 30: 116-121.
12. GRAUR, D., Y. SHUALI and W. H. LI, 1989 Deletions in processed pseudogenes accumulate faster in rodents than in humans. J. Mol. Evol. 28: 279-285.
13. GRIMM, T., G. MENG, S. LIEGHHTI-GALLATI, T. BETTECKEN, C. R. MULLER et al., 1994 On the origin of deletions and point mutations in Duchenne muscular dystrophy: most deletions arise in oogenesis and most point mutations result from events in spermatogenesis. J. Med. Genet. 31: 183-186.
14. HALDANE, J. B. S., 1947 The rate of mutation of the gene for hemophilia and its segregation in males and females. Ann. Eugen. 13: 262-271.
15. HURST, L. D., and H. ELLEGREN, 1998 Sex differences in the mutation rate. Trends Genet. 14: 446-452.
16. KAHN, N. W., and T. W. QUINN, 1999 Male-driven evolution among Eoaves? A test of the replicative division hypothesis in a heterogametic female (ZW) system. J. Mol. Evol, 49: 750-759.
17. KETTERLING, R. P., E. L. VIELHABER, T.J. LIND, E. C. THORLAND and S. S. SOMMER, 1994 The rates and patterns of deletions in the human factor IX gene. Am. J. Hum. Genet. 54: 201-213.
18. KUMAR, S., K. TAMURA, I. B. JAKOBSEN and M. NEI, 2001 MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
19. KUNKEL, T. A., 1990 Misalignment-mediated DNA synthesis errors. Biochemistry 29: 8003-8011.
20. KUNKEL, T. A., and K. BEBENEK, 2000 DNA replication fidelity. Annu. Rev. Biochem. 69: 497-529.
21. KUNKEL, T. A., and A. SONI, 1988 Mutagenesis by transient misalignment. J. Biol. Chem. 263: 14784-14789.
22. LÁZARO, C., A. GAONA, P. AINSWORTH, R. TENCONI, D. VIDAUD et al., 1996 Sex differences in mutational rate and mutational mechanism in the NF1 gene in neurofibromatosis type 1 patients. Hum. Genet. 98: 696-699.
23. LERGER, M. L., and L. D. HURST, 2002 Human SNP variability and mutation rates are higher in regions of high recombination. Trends Genet. 18: 337-340.
24. LÓPEZ-CORREA, C., H. BREMS, C. LÁZARO, P. MARYNEN and E. LEGIUS, 2000 Unequal crossover: a frequent cause of NF1 microdeletions. Am. J. Hum. Genet. 66: 1969-1974.
25. MAKOVA, K. D., and W. H. LI, 2002 Strong male-driven evolution of DNA sequences in humans and apes. Nature 416: 624-626.
26. McVEAN, G. T., and L. D. HURST, 1997 Evidence for a selectively favourable reduction in the mutation rate of the X chromosome. Nature 386: 388-392.
27. MIYATA, T., H. HAYASHIDA, K. KUMA, K. MITYASU and T. YASUNAGA, 1987 Male-driven molecular evolution: a model and nucleotide sequence analysis. Cold Spring Harbor Symp. Quant. Biol. 52: 863-867.
28. MONTELI, H., A. K. FRIDOLFSSON and H. ELLEGREN, 2001 Contrasting levels of nucleotide diversity on the avian Z and W sex chromosomes. Mol. Biol. Evol. 18: 2010-2016.
29. NACHMAN, M. W., and S. L. CROWELL, 2000 Estimate of the mutation rate per nucleotide in humans. Genetics 156: 297-304.
30. OSHEROFF, W. P., W. A, BEARD, S. YIN, S. H. WILSON and T. A. KUNKEL, 2000 Minor groove interactions at the DNA polymerase beta active site modulate single-base deletion error rates. J. Biol. Chem. 275: 28033-28038.
31. PÉREZ-JURADO L. A., R. PEOPLES, P. KAPLAN, B. C. HAMEL and U. FRANCKE, 1996 Molecular definition of the chromosome 7 deletion in Williams syndrome and parent-of-origin effects on growth. Am. J. Hum. Genet. 59: 781-792.
32. PETROV, D. A., 2001 Evolution of genome size: new approaches to an old problem. Trends Genet. 17: 23-28.
33. PETROV, D. A., and D. L. HARTL, 1998 High rate of DNA loss in the D. melanogaster and D. virilis species groups. Mol. Biol. Evol. 15: 293-302.
34. PETROV, D. A., and D. L. HARTL, 1999 Patterns of nucleotide substitution in Drosophila and mammalian genomes. Proc. Natl. Acad. Sci. USA 96: 1475-1479.
35. PETROV, D. A., T. A. SANGSTER, J. S. JOHNSTON, D. L, HARTL and K. L. SHAW, 2000 Evidence for DNA loss as a determinant of genome size. Science 287: 1060-1062.
36. PRITCHARD, J. K., and S, W. SCHAEFFER, 1997 Polymorphism and divergence at a Drosophila pseudogene locus. Genetics 147: 199-208.
37. SAITOU, N., and S. UEDA, 1994 Evolutionary rates of insertion and deletion in noncoding nucleotide sequences of primates. Mol. Biol. Evol. 11: 504-512.
38. SHIMMIN, L. C., B. H. CHANG and W. H. LI, 1993 Male-driven evolution of DNA sequences. Nature 362: 745-747.
39. SOMMER, S. S., W. A. SCARINGE and K. A. HILL, 2001 Human germline mutation in the factor IX gene. Mutat. Res. 487: 1-17.
40. VINOGRADOV, A. E., 2002 Growth and decline of introns, Trends Genet. 18: 232-236.
41. VOGEL, F., and A. G. MOTULSKY, 1996 Human Genetics - Problems and Approaches. Springer-Verlag, Berlin/Heidelberg/New York.