Asymmetric binding of the high-affinity QH•- ubisemiquinone in quinol oxidase (bo3) from Escherichia coli studied by multifrequency electron paramagnetic resonance spectroscopy

Biochemistry

Volumn 42, Issue 19, 2003, Pages 5632-5639

  Grimaldi, S ^a   Ostermann, T ^a,b   Weiden, N ^e   Mogi, T ^c   Miyoshi, H ^d   Ludwig, B ^a   Michel, H ^b   Prisner, T F ^a   MacMillan, F ^a  

^a GOETHE UNIVERSITY   (Germany)

^b MAX PLANCK INSTITUTE OF BIOPHYSICS   (Germany)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^d KYOTO UNIVERSITY   (Japan)

^e DARMSTADT UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; HYDROGEN BONDS; ORGANIC SOLVENTS; PROTEINS;

ASYMMETRIC BINDING;

BIOCHEMISTRY;

1,4 BENZOQUINONE; OXIDOREDUCTASE; QUINOL OXIDASE; SEMIQUINONE; UBISEMIQUINONE; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; BINDING SITE; ELECTRON SPIN RESONANCE; ENZYME BINDING; ESCHERICHIA COLI; HYDROGEN BOND; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING;

BINDING SITES; ELECTRON SPIN RESONANCE SPECTROSCOPY; ELECTROSTATICS; ESCHERICHIA COLI; HYDROGEN BONDING; KINETICS; MODELS, MOLECULAR; OXIDOREDUCTASES; UBIQUINONE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0037952934     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi034010z     Document Type: Article

References (52)

1. Trumpower, B. L. (1982) Function of Quinones in Energy Conserving Systems, Academic Press, New York.
2. Shinkarev, M. Y., and Wraight, C. A. (1993) in The Photosynthetic Reaction Center (Deisenhofer, J., and Norris, J. R. Eds.) Vol. 1, pp 194-255, Academic Press, San Diego.
3. Lubitz, W., and Feher, G. (1999) Appl. Magn. Reson. 17, 1-48.
4. Breton, J., Burie, J. R., Berthomieu, C., Berger, G., and Nabedryk, E. (1994) Biochemistry 33, 4953-4965.
5. Zhao, X., Ogura, T., Okamura, M., and Kitagawa, T. (1997) J. Am. Chem. Soc. 119, 5263-5264.
6. Van Liemt, W. B. S., Boender, G. J., Gast, P., Hoff, A. J., Lugtenburg, J., and de Groot, H. J. M. (1995) Biochemistry 34, 10229-10236.
7. Mogi, T., Tsubaki, M., Hori, H., Miyoshi, H., Nakamura, H., and Anraku, Y. (1998) J. Biochem. Mol. Biol. Biophys. 2, 79-110.
8. Sato-Watanabe, M., Mogi, T., Miyoshi, H., Iwamura, H., Matsushita, K., Adachi, O., and Anraku, Y. (1994) J. Biol. Chem. 269, 28899-29907.
9. Sato-Watanabe, M., Mogi, T., Ogura, T., Kitagawa, T., Miyoshi, H., Iwamura, H., and Anraku, Y. (1994) J. Biol. Chem. 269, 28908-28912.
10. Abramson, J., Riistama, S., Larsson, G., Jasaitis, A., SvenssonEk, M., Laakkonen, L., Puustinen, A., Iwata, S., and Wikström, M. (2000) Nature Struct. Biol. 7, 910-917.
11. Sato-Watanabe, M., Itoh, S., Mogi, T., Matsuura, K., Miyoshi, H., and Anraku, Y. (1995) FEBS Lett. 374, 265-269.
12. Ingledew, W. J., Ohnishi, T., and Salerno, J. C. (1995) Eur. J. Biochem. 227, 903-908.
13. Grimaldi, S., MacMillan, F., Ostermann, T., Ludwig, B., Michel, H., and Prisner, T. (2001) Biochemistry 40, 1037-1043.
14. Veselov, A. V., Osborne, J. P., Gennis, R. B., and Scholes, C. P. (2000) Biochemistry 39, 3169-3175.
15. Hastings, S. F., Heathcote, P., Ingledew, W. J., and Rigby, S. E. J. (2000) Eur. J. Biochem. 267, 5638-5645.
16. Michel-Beyerle, M. E., Ed. (1996) in The Reaction Center of Photosynthetic Bacteria: Structure and Dynamics, Springer-Verlag, Berlin, Germany.
17. Breton, J., Burie, J. R., Boullais, C., Berger, G., and Nabredyk, E. (1994) Biochemistry 33, 12405-12415.
18. Brudler, R., de Groot, H. J. M., van Liemt, W. B. S., Steggerda, W. F., Esmeijer, R., Gast, P., Hoff, A. J., Lugtenburg, J., and Gerwert, K. (1994) EMBO J. 13, 5523-5530.
19. Breton, J., Boullais, C., Burie, J. R., Nabredyk, E., and Mioskowski, C. (1994) Biochemistry 33, 14378-14386.
20. Van den Brink, J. S., Spoyalov, A. P., Gast, P., van Liemt, W. B. S., Raap, J., Lugtenburg, J., and Hoff, A. J. (1994) FEBS Lett. 353, 273-276.
21. Isaacson, R. A., Abresch, E. C., Lendzian, F., Boullais, C., Paddock, M. L., Mioskowski, C., Lubitz, W., and Feher, G. (1996) in The reaction center of photosynthetic bacteria, structure and dynamics (Michel-Beyerle, M.-E., Ed.) pp 353-367, SpringerVerlag, Berlin, Germany.
22. Brudler, R., de Groot, H. J., van Liemt, W. B., Gast, P., Hoff, A. J., Lugtenburg, J., and Gerwert, K. (1995) FEBS Lett. 370, 88-92.
23. Breton, J., Boullais, C., Berger, G., Mioskowski, C., and Nabredyk, E. (1995) Biochemistry 34, 11606-11616.
24. Nimz, O., Lendzian, F., Boullais, C., and Lubitz, W. (1998) Appl. Magn. Reson. 14, 255-263.
25. Karplus, M. A., and Fraenkel, G. K. (1961) J. Chem. Phys. 35, 1312-1323.
26. Das, M. R., and Fraenkel, G. K. (1965) J. Chem. Phys. 42, 1350-1360.
27. O'Malley, P. J. (1998) Chem. Phys. Lett. 291, 367-374.
28. Hellwig, P., Mogi, T., Tomson, F. L., Gennis, R. B., Iwata, J., Miyoshi, H., and Mäntele, W. (1999) Biochemistry 38, 14683-14689.
29. Rumbley, J. N., Furlong Nickels, E. F., and Gennis, R. B. (1997) Biochim. Biophys. Acta 1340, 131-142.
30. Schröter, T., Winterstein, C., Ludwig, B., and Richter, O.-M. H. (1998) FEBS Lett. 432, 109-112.
31. Faller, P., Maly, T., Rutherford, A. W., and MacMillan, F. (2001) Biochemistry 40, 320-326.
32. Prisner, T. F., Lyubenova, S., Atabay, Y., MacMillan, F., Kröger, A., and Klimmek, O. (2003) J. Biol. Inorg. Chem. 8, 419-426.
33. Burghaus, O., Plato, M., Rohrer, M., Möbius, K., MacMillan, F., and Lubitz, W. (1993) J. Phys. Chem. 29, 7639-7647.
34. MacMillan, F., Lendzian, F., and Lubitz, W., (1995) Magn. Reson. Chem. 33, 81-93.
35. Knüpling, M., Törring, J. T., and Un, S. (1997) Chem. Phys. 219, 291-304.
36. O'Malley, P. J. (1998) J. Phys. Chem. A 102, 248-253.
37. O'Malley, P. J. (1999) Biochim. Biophys. Acta 1411, 101-113.
38. Boiden Pedersen, J., Hansen C. E. M., Parbo, H., and Muus, L. T. (1975) J. Chem. Phys. 63, 2398-2405.
39. Isaacson, R. A., Lendzian, F., Abresch, E., Lubitz, W., and Feher, G. (1995) Biophys. J. 69, 311-322.
40. Strauss, H. L., and Fraenkel, G. K. (1961) J. Chem. Phys. 35, 1738.
41. Samoilova, R. I., Van Liemt, W. B. S., Steggerda, W. F., Lugtenburg, J., and Hoff, A. J. J. (1994) J. Chem. Soc., Perkin Trans. 2, 609-614.
42. MacMillan, F., Lendzian, F., Renger, G., and Lubitz, W. (1995) Biochemistry 8144-8156.
43. Jordan, P., Fromme, P., Witt, H. T., Klukas, O., Saenger, W., and Krauss, N. (2001) Nature 411, 909-917.
44. Kaupp, M. (2002) Biochemistry 41, 2895-2900.
45. Rigby, S. E. J., Heathcote, P., and Evans, M. C. W. (1996) Biochemistry 35, 6651-6656.
46. Rohrer, M., MacMillan, F., Prisner, T. F., Gardiner, A., Möbius, K., and Lubitz, W. (1998) J. Phys. Chem. B 102, 4648-4657.
47. Kropacheva, T. N., van Liemt, W. B. S., Raap, J., Lugtenburg, J., and Hoff, A. J. (1996) J. Phys. Chem. 100, 10433-10442.
48. Stowell, M. H., McPhilips, T. M., Rees, D. C., Soltis, S. M., Abresch, E., and Feher, G. (1997) Science 276, 812-816.
49. Deligiannakis, Y., Hanley, J., and Rutherford, A. W. (1999) J. Am. Chem. Soc. 121, 7653-7664.
50. Kobayashi, K., Tagawa, S., and Mogi, T. (2000) Biochemistry 39, 15620-15625.
51. Hellwig, P., Barquera, B., and Gennis, R. B. (2000) Biochemistry 40, 1077-1082.
52. Hellwig, P., Yano, T., Ohnishi, T., and Gennis, R. B. (2002) Biochemistry 41, 10675-10679.