A phylogenetic approach to assessing the targets of microbial warfare

Journal of Evolutionary Biology

Volumn 16, Issue 4, 2003, Pages 690-697

  Riley, Margaret A ^a   Goldstone, C M ^a   Wertz, J E ^a   Gordon, D ^b  

^a YALE UNIVERSITY   (United States)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

Bacteriocins; Enterobacteriaceae; Microbial defense systems; Microbial warfare

Indexed keywords

BACTERIOCIN;

BACTERIUM; DEFENSE MECHANISM; PHYLOGENETICS;

ARTICLE; ECOSYSTEM; ENTEROBACTERIACEAE; GENETICS; PATHOGENICITY; PHYLOGENY; PHYSIOLOGY; POPULATION DYNAMICS;

BACTERIOCINS; ECOSYSTEM; ENTEROBACTERIACEAE; PHYLOGENY; POPULATION DYNAMICS;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; MAMMALIA;

EID: 0037932610     PISSN: 1010061X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1420-9101.2003.00575.x     Document Type: Article

References (48)

1. Atkinson, N. 1973. Colicin-like antibiotics of 100 strains of Salmonella. Ajebak 51: 435-444.
2. Bauernfeind, A., Petermuller, C. & Schneider, R. 1981. Bacteriocins as tools in analysis of nosocomial Klebsiella pneumoniae infections. Journal of Clinical Microbiology 14: 15-19.
3. Bradley, D. 1991. Colicinogeny of O55 EPEC diarrhoeagenic Escherichia coli. FEMS Microbiol. Lett. 90: 49-52.
4. Buffenmyer, C., Rycheck, R. & Yee, R. 1976. Bacteriocin (Klebicin) sensitivity typing of Klebsiella. J. Clin. Microbiol. 4: 239-244.
5. Chakraborty, D. & Nag, N.C. 1998. Colicinogenicity and enteropathogenicity of Escherichia coli associated with gastroenteritis in man. J. Communicable Dis. 30: 263-265.
6. Chao, L. & Levin, B.R. 1981. Structured habitats and the evolution of anticompetitor toxins in bacteria. PNAS 78: 6324-6328.
7. Chhibber, S. & Vadehra, D.V. 1989. Effect of medium on the bacteriocin production by Klebsiella pneumoniae. Folia. Microbiol. 34: 1989.
8. Czárán, T.L., Hoekstra, R.F. & Pagie, L. 2002. Chemical warfare between microbes promotes biodiversity. PNAS 99: 786-790.
9. Daw, M., Corcoran, G., Falkiner, F. & Keane, C. 1992. Application and assessment of cloacin typing of Enterobacter cloacae. Journal of Hospital Infection 20: 141-151.
10. Dhillon, T. & Dhillon, E. 1981. Incidence of lysogeny, colicinogeny, and drug resistance in Enterobacteria isolated from sewage and from rectum of humans and some domesticated species. Appl. Environ. Microbiol. 41: 894-902.
11. Dodatko, T., Kiprianova, E. & Smirnov, V. 1989. Bacteriocin typing of Pseudomonas cepacia strains isolated from patients and plant rhizophere. Zhurnal Mikrobiologii Epidemeiologii I Immunobiologii 1: 21-26.
12. Edmondson, A.A. & Cooke, E.M. 1979. The development and assessment of a bacteriocin typing method for Klebsiella. J. Hyg., Camb. 82: 207-222.
13. Frank, S. 1994. Spatial polymorphism of bacteriocins and other allelopathic traits. Evol. Ecol. 8: 369-386.
14. Gordon, D.M. 2001. Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination. Microbiology 147: 1079-1085.
15. Gordon, D.M. & Fitzgibbon, F. 1999. The distribution of enteric bacteria from Australian mammals: host and geographical effects. Microbiology 145: 2663-2671.
16. Gordon, D.M. & Lee, J. 1999. The genetic structure of enteric bacteria from Australian mammals. Microbiology 145: 2673-2682.
17. Gordon, D.M. & Riley, M.A. 1999. A theoretical and empirical investigation of the invasion dynamics of colicinogeny. Microbiology 145: 655-661.
18. Gordon, D.M., Riley, M.A. & Pinou, T. 1998. Temporal changes in the frequency of colicinogeny in Escherichia coli from house mice. Microbiology 144: 2233-2240.
19. Huelsenbeck, J.P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
20. James, S. & Tagg, T. 1986. The typing of Enterococcus strains according to their production of bacteriocin-like inhibitory activity. Proc Univ Otago Med School 64: 65-66.
21. James, R., Lazdunski, C. & Pattus, F. 1991. Bacteriocins, Microcins and Lantibiotics. pp. 519. NATO ASI series, Springer-Verlag, New York.
22. James, R., Kleanthous, C. & Moore, G.R. 1996. The biology of E colicins: Paradigms and paradoxes. Microbiology 142: 1569-1580.
23. Kageyama, M. 1975. Bacteriocins and bacteriophages in Pseudomonas aeruginosa. In: Microbial Drug Resistance (S. Mitsuhashi & H. Hashimoto, eds), pp. 291-305. University of Tokyo Press, Tokyo.
24. Kerr, B., Riley, M.A., Feldman, M. & Bohannan, B. 2002. Local dispersal and interaction promote coexistence in a real life game of rock-paper-scissors. Nature 418: 171-174.
25. Klaenhammer, T.R. 1988. Bacteriocins of lactic acid bacteria. Biochimie 70: 337-349.
26. Miller, M. & Bassler, B. 2001. Quorum sensing in bacteria. Annu. Rev. Microbiol. 55: 165-199.
27. Murinda, S., Liu, S.M., Roberts, R.F. & Wilson, R.A. 1998. Colicinogeny among Escherichia coli serotypes, including O157:H7, representing four closely related diarrheagenic clones. J. Food Prot. 61: 1431-1438.
28. Podschun, R. & Ullmann, U. 1993. Bacteriocin typing of environmental Klebsiella strains. Zbl. hyg. 195: 22-26.
29. Podschun, R. & Ullmann, U. 1996. Bacteriocin typing of Klebsiella spp. isolated from different sources 198: 258-264.
30. Posada, D. & Crandall, K.A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
31. Pugsley, A.P. & Oudega, B. 1987. Methods for studying colicins and their plasmids. In: Plasmids, a Practical Approach (K. G. Hardy, ed.), pp. 105-161. IRL Press, Oxford.
32. Riley, M.A. 1998. Molecular mechanisms of bacteriocin evolution. Ann. Rev. Genetics 32: 255-278.
33. Riley, M.A. & Gordon, D.M. 1992. A survey of col plasmids in natural strains of Escherichia coli and an investigation into the stability of col-plasmid lineages. J. Gen. Microbiol 138: 1345-1352.
34. Riley, M.A. & Gordon, D. 1995. Ecology and evolution of bacteriocins. J. Ind. Microbiol. 17: 155-158.
35. Riley, M.A. & Wertz, J.E. 2002. Bacteriocins: evolution, ecology & application. Ann. Microbiol. 56: 117-137.
36. Rodriguez-Valera, F., Juez, G. & Kushner, D.J. 1982. Halocins: salt dependent bacteriocins produced by extremely halophilic rods. Can. J. Microbiol. 28: 151-154.
37. Scott, H.G. & Mahony, D.E. 1982. Further development of a bacteriocin typing system for Clostridium perfringens. J. Appl. Bacteriol. 53: 363-369.
38. Smarda, J. 1992. Resistance and tolerance of bacteria to E colicins. In: Bacteriocins, Microcins, and Lantibiotics (R. James, C. Lazdunski & F. Pattus, eds), pp. 493-502. Springer-Verlag, Berlin.
39. Smarda, J. & Obdrzalek, V. 2001. Incidence of colicinogenic strains among human Escherichia coli. J. Basic Microbiol. 41: 367-374.
40. Smarda, J. & Smajs, D. 1998. Colicins-exocellular lethal proteins of Escherichia coli. Folia Microbiol 43: 563-582.
41. Sproat, D. & Brown, A. 1979. Bacteriocin Typing of Serratia marcescens. American Society of Clinical Pathologists, Chicago.
42. Swofford, D. 1997. PAUP*: Phylogenetic Analysis Using Parsimony (* and other methods). Sinauer Associates, Sunderland, MA, USA.
43. Tagg, J. 1991. BLIS production in the genus Streptoccocus. In: Bacteriocins, Microcins and Lantibiotics (R. James, C. Lazdunski & F. Pattus, eds), pp. 417-420. Springer-Verlag, New York.
44. Tagg, J.R., Dajani, A.S. & Wannamaker, L.W. 1976. Bacteriocins of gram-positive bacteria. Bacteriol. Rev. 40: 722-756.
45. Tan, Y. & Riley, M.A. 1996. Rapid invasion by colicinogenic Escherichia coli with novel immunity functions. Microbiology 142: 2175-2180.
46. Thompson, J., Higgins, D. & Gibson, T. 1994. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position- specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4580.
47. Torreblanca, M., Meseguer, I. & Ventosa, A. 1994. Production of halocin is a practically universal feature of archael halophilic rods. Lett. Appl. Microbiol. 19: 201-205.
48. Watson, G.N. 1985. The assessment and application of a bacteriocin typing scheme for Clostridium perfringens. J. Hygiene 94: 69-79.