Comparative analysis of the mitochondrial DNA control region in cyprinids with different ploidy level

Aquaculture

Volumn 224, Issue 1-4, 2003, Pages 25-38

  Guo, Xinhong ^a   Liu, Shaojun ^a   Liu, Yun ^a  

^a HUNAN NORMAL UNIVERSITY   (China)

Author keywords

Control region; Cyprinids; Mitochondrial DNA

Indexed keywords

CYPRINID; MITOCHONDRIAL DNA; PLOIDY; POLYMERASE CHAIN REACTION;

CARASSIUS CARASSIUS; CYPRINIDAE; CYPRINUS CARPIO; DANIO RERIO; MAMMALIA;

EID: 0037911505     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0044-8486(03)00168-6     Document Type: Article

References (29)

1. Bentzen, P., Leggett, W.C., Brown, G.G., 1988. Length and restriction site heteroplasmy in the mitochondrial DNA of American Shad (Alosa sapidissima). Genetics 118, 509-518.
2. Broughton, R.E., Dowling, T.E., 1994. Length variation in mitochondrial DNA of the minnow Cyprinella spilloptera. Genetics 138, 179-190.
3. Broughton, R.E., Milam, J.E., Roe, B.A., 2001. The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA. Genome Res. 11, 1958-1967.
4. Brown, G.G., Gadaleta, G., Pepe, G., Saccone, C., Sbisa, E., 1986. Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192, 503-511.
5. Brown, J.R., Beckenbach, A.T., Simth, M.J., 1992. Mitochondrial DNA length variation, heteroplasmy in populations of white sturgeon (Acipenser transmontanus). Genetics 132, 221-228.
6. Buroker, N.E., Brown, J.R., Gilbert, T.A., Hara, P.J.O., Beckenbach, A.T., 1990. Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model. Genetics 124, 157-163.
7. Chang, Y., Huang, F., Lo, T., 1994. The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome. J. Mol. Evol. 38, 138-155.
8. Foran, D.R., Hixson, J.E., Brown, W.M., 1988. Comparison of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis. Nucleic Acids Res. 16, 5841-5861.
9. Foran, D.R., Hixson, J.E., Brown, W.M., 1989. Similarities of ape and human sequences that regulate mitochondrial DNA transcription and the DNA synthesis. Nucleic Acids Res. 17, 5841-5861.
10. Hoelzel, A.R., Hancock, J.M., Dover, G.A., 1991. Evolution of the cetacean mitochondrial D-loop region. Mol. Biol. Evol. 8, 475-493.
11. Johansen, S., Guddal, P.H., Johansen, T., 1990. Organization of the mitochondrial genome of Atlantic cod, Gadus morhua. Nucleic Acids Res. 18, 411-419.
12. Lee, W.-J., Conroy, J., Howell, W.H., Kocher, T.D., 1995. Structure and evolution of teleost mitochondrial control regions. J. Mol. Evol. 41, 54-66.
13. Liu, S.-J., Hu, F., Zhou, G.-J., Zhang, X.-J., He, X.-X., Feng, H., Liu, Y., 2000. Gonadal structure of allotriploid crucian carp produced by crossing allotetraploid hybrids of Carassius Carassius red van (♀) x Cyprinus carpio L. (♂) with Japanese crucian carp (Carassius auratuscavieri T. et S). Acta Hydrobiol. Sin. 24 (7), 301-306 (in Chinese with English abstract).
14. Liu, S.-J., Liu, Y., Zhou, G.-J., Zhang, X.-J., Lou, C., Feng, H., He, X.-X., Zhu, G.-H., Yang, H., 2001. The formation of tetraploid stocks of red crucian carp x common carp hybrids as an effect of interspecific hybridization. Aquaculture 192, 171-186.
15. Miracle, A.L., Camption, D.E., 1995. Tendem repeat sequence variation and length heteroplasmy in the mitochondrial DNA D-loop of the threatened Gulf of mexico sturgeon, Acipenser oxyrhynchus desotol. J. Heredity 86, 22-27.
16. Moritz, C., Dowling, T.E., Brown, W.M., 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu. Rev. Ecolog. Syst. 18, 269-292.
17. Pesole, G., Gissi, C., Chirico, D.E., Saccone, C., 1999. Nucleotide substitution rate of mammalian mitochondrial genomes. J. Mol. Evol. 48, 427-434.
18. Rand, D.M., 1993. Endotherms, ectotherms, and mitochondrial genome-size variation. J. Mol. Evol. 37, 281-295.
19. Rand, D.M., Harrison, R.G., 1989. Molecular population genetics of mtDNA size variation in crickets. Genetics 121, 551-559.
20. Randi, E., Lucchini, V., 1998. Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47, 149-157.
21. Roe, B.A., Ma, D.P., Wilson, R.K., Wong, J.F.-H., 1985. The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. J. Mol. Evol. 48, 118-123.
22. Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (4), 406-425.
23. Sbisa, E., Tanzariello, F., Reyes, F., Pesole, G., Saccone, C., 1997. Mammlian mitochondrial D-loop region structural analysis: identification of new conserved sequences and the functional and evolutionary implications. Gene 205, 125-140.
24. Shaffer, H.B., McKnight, M.L., 1996. The polytypic species revisited: genetic differentiation and molecular phylogenetic of the tiger salamander Ambystoma tigrinum (Amphibia: Caudata) complex. Evolution 50, 417-433.
25. Southern, S.O., Southern, P.J., Dizon, A.E., 1988. Molecular characterization of a cloned dolphin mitochondrial genome. J. Mol. Evol. 28, 32-40.
26. 11 allotetraploid crucian carp. Acta Genet. Sin. 30 (5), 37-41 (in Chinese with English abstract).
27. Wilkinson, G.S., Chapman, A.M., 1991. Length and sequence variation in evening bat D-loop mtDNA. Genetics 128, 607-617.
28. Yang, Y.-J., Lin, Y.-S., Wu, J.-L., Hui, C.-F., 1994. Variation in mitochondrial DNA and population structure of the Taipei treefrog Rhacophorus taipeianus in Taiwan. Mol. Ecol. 3, 219-228.
29. Zardoya, R., Meyer, A., 1996. The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolli) supports its phylogenetic position as a close relative of land vertebrates. Genetics 142, 1249-1263.