Mass spectrometric determination of association constants of adenylate kinase with two noncovalent inhibitors

Journal of the American Society for Mass Spectrometry

Volumn 14, Issue 5, 2003, Pages 442-448

  Daniel, Jürg M ^a   McCombie, Gregor ^a   Wendt, Silke ^a   Zenobi, Renato ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ASSOCIATION REACTIONS; COMPLEXATION; IONIZATION; MUSCLE;

NONCOVALENT COMPLEXES;

MASS SPECTROMETRY;

ADENYLATE KINASE; P1,P4 DI(ADENOSINE 5')TETRAPHOSPHATE; P1,P5 DI(ADENOSINE 5')TETRAPHOSPHATE; PHOSPHATE; UNCLASSIFIED DRUG; ENZYME INHIBITOR;

MASS SPECTROMETRY;

BIOAVAILABILITY; CHICKEN; CONTROLLED STUDY; DENATURATION; MASS SPECTROMETRY; MEDICAL LITERATURE; NONHUMAN; REVIEW; TITRIMETRY; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; DRUG ANTAGONISM; ELECTROSPRAY MASS SPECTROMETRY; ENZYMOLOGY; PROTEIN BINDING; SKELETAL MUSCLE;

GALLUS GALLUS;

ADENYLATE KINASE; ANIMALS; CHICKENS; ENZYME INHIBITORS; MOLECULAR STRUCTURE; MUSCLE, SKELETAL; PROTEIN BINDING; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 0037824630     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1044-0305(03)00132-6     Document Type: Article

References (45)

1. Siuzdak G. The emergence of mass spectrometry in biochemical research. Proc. Natl. Acad. Sci. U.S.A. 91:1994;11290-11297.
2. Smith R.D., Bruce J.E., Wu Q., Lei Q.P. New mass spectrometric methods for the study of noncovalent associations of biopolymers. Chem. Soc. Rev. 26:1997;191-202.
3. Loo J.A. Studying noncovalent protein complexes by ESI MS. Mass Spectrom. Rev. 16:1997;1-23.
4. Pramanik B.N., Bartner P.L., Mirza U.A., Liu Y.-H., Ganguly A.K. ESI MS for the Study of Non-covalent Complexes an Emerging Technology . J. Mass Spectrom. 33:1998;911-920.
5. Hillenkamp F. New Methods for the Study of Biomolecular Complexes. 1998;Kluwer Academic Publishers, Dordrecht, The Netherlands.
6. Farmer T.B., Caprioli R.M. Determination of protein-protein interactions by matrix-assisted laser desorption/ionization mass spectrometry. J. Mass Spectrom, 33:1998;697-704.
7. Winston R.L., Fitzgerald M.C. Mass Spectrometry as a readout of Protein structure and Function. Mass Spectrom. Rev. 16:1997;165-179.
8. Przybylski M., Glocker M.O. Electrospray Mass Spectrometry of Biomacromolecular Complexes with Noncovalent Interactions - New Analytical Perspectives for Supramolecular Chemistry and Molecular Recognition Processes. Angew. Chem.-Int. Edit. Engl. 35:1996;807-826.
9. Woods A.S., Buchsbaum J.C., Worrall T.A., Berg J.M., Cotter R.J. Matrix-Assisted Laser Desorption/Ionization of Noncovalently Bound Compounds. Anal. Chem. 67:1995;4462-4465.
10. Strupat K., Sagi D., Bönisch H., Schäfer G., Peter-Katalinic J. Oligomerization and Substrate Binding Studies of the Adenylate Kinase from Sulfolobus acidocaldarius by Matrix-assisted Laser Desorption/Ionization Mass Spectrometry. Analyst. 125:2000;563-567.
11. Daniel J.M., Friess S.D., Rajagopalan S., Wendt S., Zenobi R. Quantitative determination of noncovalent binding interactions using soft ionization mass spectrometry. Int. J. of Mass Spectrom. 216:2002;1-27.
12. Rogniaux H., Van Dorsselaer A., Barth P., Biellmann J.F., Barbanton J., van Zandt M., Chevrier B., Howard E., Mitschler A., Potier N., Urzhumtseva L., Moras D., Podjarny A. Binding of Aldose Reductase Inhibitors Correlation of Crystallographic and Mass Spectrometric Studies . J. Am. Soc. Mass Spectrom. 10:1999;635-647.
13. Fändrich M., Tito M.A., Leroux M.R., Rostom A.A., Hartl F.U., Dobson C.M., Robinson C.V. Observation of the noncovalent assembly and disassembly pathways of the chaperone complex MtGimC by mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 97:2000;14151-14155.
14. Nesatyy V.J. Gas-phase binding of non-covalent protein complexes between bovine pacreatic trypsin inhibitor and its target enzymes studied by ESI tandem MS. J. Mass Spectrom. 36:2001;950-959.
15. Jørgensen T.J.D., Delforge D., Remacle J., Bojesen G., Roepstorff P. Collision-induced dissociation of noncovalent complexes between vancomycin antibiotics and peptide ligand stereoisomers evidence for molecular recognition in the gas phase . Int. J. of Mass Spectrom. 188:1999;63-85.
16. Rodgers M.T., Armentrout P.B. Noncovalent Metal-Ligand Bond Energies as studied by Threshold Collision-induced Dissociation. Mass Spectrom. Rev. 19:2000;215-247.
17. Rodgers M.T., Armentrout P.B. Noncovalent Interactions of Nucleic Acid Bases (Uracil, Thymine, and Adenine) with Alkali Metal Ions. Threshold Collision-Induced Dissociation and Theoretical Studies. J. Am. Chem. Soc. 122:2000;8548-8558.
18. Strittmatter E.F., Schnier P.D., Klassen J.S., Williams E.R. Dissociation energies of deoxyribose nucleotide dimer anions measured using blackbody infrared radiative dissociation. J. Am. Soc. Mass Spectrom. 10:1999;1095-1104.
19. Schnier P.D., Klassen J.S., Strittmatter E.F., Williams E.R. Activation Energies for Dissociation of Double Strand Oligonucleotide Anions Evidence for Watson-Crick Base Pairing in Vacuo . J. Am. Chem. Soc. 120:1998;9605-9613.
20. Garcia B.A., Ramirez J., Wong S., Lebrilla C.B. Thermal dissociation of protonated cyclodextrin-amino acid complexes in the gas phase. Int. J. of Mass Spectrom. 210/211:2001;215-222.
21. He F., Ramirez J., Garcia B.A., Lebrilla C.B. Differentially heated capillary for thermal dissociation of noncovalently bound complexes produced by electrospray ionization. Int. J. of Mass Spectrom. 182:1999;261-273.
22. Cheng X.H., Gao Q.Y., Smith R.D., Jung K.-E., Switzer C. Comparison of 3′,5′- and 2′,5′-linked DNA duplex stabilities by electrospray ionization mass spectrometry. Chem. Commun. 1996;747-748.
23. Jørgensen T.J.D., Staroske T., Roepstorff P., Williams D.H., Heck A.J.R. Subtle Differences in molecular recognition between modified glycopeptide antibiotics and bacterial receptor peptides identified by ESI MS. J. Chem. Soc. Perkin Trans. 2. 1999;1859-1863.
24. Jørgensen T.J.D., Roepstorff P., Heck A.J.R. Direct Determination of Solution Binding Constants for Noncovalent Complexes between Bacterial Cell Wall Peptide Analogues and Vancomycin Group Antibiotics by Electrospray Ionization Mass Spectrometry. Anal. Chem. 70:1998;4427-4432.
25. Kempen E.C., Brodbelt J.S. A Method for the Determination of Binding Constants by ESI MS. Anal. Chem. 72:2000;5411-5416.
26. Greig M.J., Gaus H.-J., Cummins L.L., Sasmor H., Griffey R.H. Measurement of Macromolecular Binding Using Electrospray Mass Spectrometry. Determination of Dissociation Constants for Oligonucleotide-Serum Albumin Complexes. J. Am. Chem. Soc. 117:1995;10765-10766.
27. Griffey R.H., Hofstadler S.A., Sannes-Lowery K.A., Ecker D.J., Crooke S.T. Determinants of aminoglycoside-binding specificity for rRNA by using mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 96:1999;10129-10133.
28. Eckart K., Spiess J. Electrospray Ionization Mass Spectrometry of Biotin Binding Streptavidin. J. Am. Soc. Mass Spectrom. 6:1995;912-919.
29. Carte N., Legendre F., Leize E., Potier N., Reeder F., Chottard J.-C., Van Dorsselaer A. Determination by Electrospray Mass Spectrometry of the Outersphere Association Constants of DNA/Platinum Complexes Using 20-mer Oligonucleotides and ([Pt(NH3)4]2+, 2Cl-) or ([Pt(py)4]2+, 2Cl-). Anal. Biochem. 284:2000;77-86.
30. Ayed A., Krutchinsky A.N., Ens W., Standing K.G., Duckworth H.W. Quantitative Evaluation of Protein-Protein and Ligand-Protein Equilibria of a Large Allosteric Enzyme by Electrospray Ionization Time-of-flight Mass Spectrometry. Rapid Commun. Mass Spectrom. 12:1998;339-344.
31. Lim H.-K., Hsieh Y.L., Ganem B., Henion J. Recognition of Cell-wall Peptide Ligands by Vancomycin Group Antibiotics Studies Using Ion Spray Mass Spectrometry . J. Mass Spectrom. 30:1995;708-714.
32. Loo J.A., Hu P., McConnell P., Mueller W.T. A Study of Src SH2 Domain Protein-Phosphopeptide Binding Interactions by Electrospray Ionization Mass Spectrometry. J. Am. Soc. Mass Spectrom. 8:1997;234-243.
33. Sannes-Lowery K.A., Griffey R.H., Hofstadler S.A. Measuring Dissociation Constants of RNA and Aminoglycoside Antibiotics by Electrospray Ionization Mass Spectrometry. Anal. Biochem. 280:2000;264-271.
34. Reinstein J., Vetter I.R., Schlichting I., Rösch R., Wittinghofer A., Goody R.S. Fluorescence and NMR Investigations on the Ligand Binding Properties of Adenylate Kinase. Biochemistry. 29:1990;7440-7450.
35. Haase G.H.W., Brune M., Reinstein J., Pai E.F., Pingoud A., Wittinghofer A. Adenylate Kinase from Thermosensitive Escherichia coli Strains. J. Mol. Biol. 207:1989;151-162.
36. Dahnke T., Tsai M.-D. Mechanism of Adenylate Kinase. Structural and Functional Roles of the Conserved Arginine-97 and Arginine-132. J. Biol. Chem. 269:1994;8075-8081.
37. Lemaire D., Marie G., Serani L., Laprévote O. Stabilization of Gase-Phase Noncovalent Macromolecular Complexes in Electrospray Mass Spectrometry Using Aqueous Triethylammonium Bicarbonate Buffer. Anal. Chem. 73:2001;1699-1706.
38. Olcott M.C., Bradley M.L., Haley B.E. Photoaffinity Labeling of Kinase with 2-Azido and 8-Azidoadenosine Triphosphate Identification of Two Peptides from the ATP-Binding-Domain . Biochemistry. 33:1994;11935-11941.
39. David S.S., Haley B.E. ATP Nucleotidylation of Creatine Kinase. Biochemistry. 38:1999;8492-8500.
40. Wallimann T., Turner D.C., Eppenberger H.M. Localization of creatine kinase isoenzymes in myofibrils. I. Chicken skeletal muscle. J. Cell Biol. 75:1977;297-317.
41. Purich D.L., Fromm H.J. Inihibition of Rabbit Skeletal Muscle Adenylate Kinase by the Transition State Analogue P1,P4-di(adenosine-5′)tetraphophate. Biochim. Biophys. Acta. 276:1972;563-567.
42. Feldhaus P., Fröhlich T., Goody R.S., Isakov M., Schirmer R.H. Synthetic inhibitors of adenylate kinases in the assays for ATPases and phosphokinases. Eur. J. Biochem. 57:1975;197-204.
43. Shi Z., Byeon I.L., Jiang R., Tsai M.-D. Mechanism of Adenylate Kinase. What Can Be Learned from a Mutant Enzyme with Minor Perturbation in Kinetic Parameters? Biochemistry. 32:1993;6450-6458.
44. Müller C.W., Schulz G.E. Structure of the Complex Between Adenylate Kinase from Escheriachia coli and the Inhibitor Ap5A Refined at 1.9A Resolution. J. Mol. Biol. 224:1992;159-177.
45. Lienhard G.E., Secemski I.I. P1,P5-Di(adenosine-5′)pentaphosphate, a Potent Multisubstrate Inhibitor of Adenylate Kinase. J. Biol. Chem. 248:1973;1121-1123.