Molecular phylogeny of Ericameria (Asteraceae, Astereae) based on nuclear ribosomal 3′ ETS and ITS sequence data

Taxon

Volumn 52, Issue 2, 2003, Pages 209-228

  Roberts, Roland P ^a   Urbatsch, Lowell E ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Asteraceae; Chrysothamnus; Ericameria; ETS; ITS; North America; Pentachaeta; Phylogeny; Rigiopappus; Tracyina

Indexed keywords

PHYLOGENETICS;

ASTERACEAE; ASTEREAE; CHRYSOTHAMNUS; EMBRYOPHYTA; ERICAMERIA; ERICAMERIA ALBIDA; MACRONEMA; PENTACHAETA; RIGIOPAPPUS; SOLIDAGO; TRACYINA; XYLOTHAMIA;

EID: 0037771095     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.2307/3647390     Document Type: Article

References (74)

1. Anderson, L. C. 1973. Unique Chrysothamnus hybridizations in Ash Meadows, Nevada. Bull. Torrey Bot. Club 100: 171-177.
2. Anderson, L. C. 1983. Haplopappus crispus and H. zionis (Asteraceae): new species from Utah. Great Basin Natur. 43: 358-364.
3. Anderson, L. C. 1986. An overview of the genus Chrysothamnus (Asteraceae). Pp. 29-45 in: McArthur, E. D. & Bruce, L. (eds.), Proceedings - Symposium on the Biology of Artemisia and Chrysothamnus. General Technical Report INT-200, U.S.D.A. Forest Service, Ogden, Utah.
4. Anderson, L. C. 1995. The Chrysothamnus - Ericameria connection (Asteraceae). Great Basin Natur. 55: 84-88.
5. Anderson, L. C. & Reveal, G. L. 1966. Chrysothamnus bolanderi, an intergeneric hybrid. Madroño 18: 225-256.
6. Baldwin, B. G. & Markos, S. 1998. Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae). Molec. Phylog. Evol. 10: 449-463.
7. Blake, S. F. 1935. Five new plants in the genus Aplopappus. Proc. Biol. Soc. Washington 48: 169-174.
8. Blake, S. F. 1937. Tracyina, a new genus of Asteraceae from northern California. Madroño 4: 73-77.
9. Bohm, B. A. & Stuessy, T. F. 2001. Flavonoids of the Sunflower Family (Asteraceae). Springer, Vienna.
10. Bremer, K. 1994. Asteraceae, Cladistics and Classification. Timber Press, Portland, Oregon.
11. Brown, G. K. & Keil, D. J. 1993. Ericameria. Pp. 250-253 in: Hickman, J. C. (ed.), The Jepson Manual. Higher Plants of California. Univ. California Press, Berkeley.
12. Clark, W. D. 1979. The taxonomy of Hazardia (Compositae: Astereae). Madroño 26: 105-127.
13. Clevinger, J. A. & Panero, J. L. 2000. Phylogenetic analysis of Silphium and subtribe Engelmanniinae (Asteraceae: Heliantheae) based on ITS and ETS sequence data. Amer. J. Bot. 87: 565-572.
14. Cody, M. L. & Thompson, H. J. 1986. Distribution and morphology of Haplopappus hybrids (Asteraceae: Astereae) in the Mojave Desert. Madroño 33: 237-243.
15. Cronquist, A. 1955. Compositae. Pp. 1-343 in: Hitchcock, C. L., Cronquist, A., Owenbey, M. & Thompson, J. W. (eds.), Vascular Plants of the Pacific Northwest, vol. 5. Univ. Washington Press, Seattle, Washington.
16. Doyle, J. J. & Doyle, J. L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
17. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
18. Geyer, C. J. & Thompson, E. A. 1995. Annealing Markov-chain Monte-Carlo with applications to ancestral inference. J. Amer. Stat. Assoc. 90: 909-920.
19. Goldman, N., Anderson, J. P. & Rodrigo, A. G. 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49: 652-670.
20. Gray, A. 1865. Characters of some new plants of California and Nevada... Proc. Amer. Acad. Arts 6: 519-556.
21. Gray, A. 1873. Notes on Compositae and characters of certain genera and species, etc. Proc. Amer. Acad. Arts 8: 631-661.
22. Greene, E. L. 1895. Observations on the Compositae. VIII. Erythea 3: 6-15.
23. Hall, H. M. 1907. Compositae of southern California. Univ. Calif. Publ. Bot. 3: 1-302.
24. Hall, H. M. 1928. The genus Haplopappus - a phylogenetic study in the Compositae. No. 389: 1-391. Carnegie Instit., Washington, D.C.
25. Hall, H. M. & Clements, F. E. 1923. The phylogenetic method in taxonomy: the North American species of Artemisia, Chrysothamnus and Atriplex. No. 326: 1-355. Carnegie Instit., Washington, D.C.
26. Huelsenbeck, J. P. & Ronquist, F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
27. Johnston, M. C. 1970. Ericameria. Pp. 1577-1578 in: Correll, D. S. & Johnston, M. C. (eds.), Manual of the Vascular Plants of Texas. Texas Research Foundation, Renner, Texas.
28. Lane, M. A. & Hartman, R. L. 1996. Reclassification of North American Haplopappus (Compositae: Astereae) completed: Rayjacksonia gen. nov. Amer. J. Bot. 83: 356-370.
29. Lane, M. A., Morgan, D. R., Suh, Y., Simpson, B. B. & Jansen, R. K. 1996. Relationships of North American genera of Astereae, based on chloroplast DNA restriction site data. Pp. 49-77 in Hind, D. J. N. & Beentje, H. J. (eds.), Compositae: Systematics. Proceedings of the International Compositae Conference, Kew, 1994, vol. 1. Royal Botanic Gardens, Kew.
30. Leache, A. D. & Reeder, T. W. 2002. Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51: 44-68.
31. Li, W.-H. 1997. Molecular Evolution. Sinauer Associates, Sunderland, Massachusetts.
32. Maddison, W. P. & Maddison, D. R. 2000. MacClade version 4: Analysis of Phylogeny and Character Evolution. Sinauer Associates, Sunderland, Massachusetts.
33. Marinari, E. & Parisi, G. 1992. Simulated tempering - a new Monte-Carlo scheme. Europhys. Lett. 19: 41-458.
34. Markos, S. & Baldwin, B. G. 2001. Higher-level relationships and major lineages of Lessingia (Compositae, Astereae) based on nuclear rDNA internal and external transcribed spacer (ITS and ETS) sequences. Syst. Bot. 26: 168-183.
35. Moran, R. 1969. Five new taxa of Haplopappus (Compositae) from Baja California, Mexico. Trans. San Diego Soc. Nat. Hist. 15: 149-164.
36. Morgan, D. R. & Simpson, B. B. 1992. A systematic study of Machaeranthera (Asteraceae) and related groups using restriction site analysis of chloroplast DNA. Syst. Bot. 17: 511-531.
37. Nesom, G. L. 1989. New combinations in Ericameria (Compositae: Astereae). Phytologia 67: 104-106.
38. Nesom, G. L. 1990. Taxonomic summary of Ericameria (Asteraceae, Astereae), with the inclusion of Haplopappus sects. Macronema and Asiris. Phytologia 68: 144-155.
39. Nesom, G. L. 1991. Morphological definition of the Gutierrezia group (Asteraceae: Astereae). Phytologia 71: 252-262.
40. Nesom, G. L. 1992. A new gypsophilic species of Xylothamia (Asteraceae: Astereae) from the Cuatro Cienegas area of Coahuila, Mexico. Phytologia 73: 318-320.
41. Nesom, G. L. 1994. Subtribal classification of the Astereae (Asteraceae). Phytologia 76: 193-274.
42. Nesom, G. L. 2000. Generic conspectus of the tribe Astereae (Asteraceae) in North America, Central America, the Antilles and Hawaii. Sida, Botanical Miscellany, 20: 1-100.
43. Nesom, G. L. & Baird, G. I. 1993. Completion of Ericameria (Asteraceae: Astereae): diminution of Chrysothamnus. Phytologia 75: 74-93.
44. Nesom, G. L. & Baird, G. I. 1995. Comments on "The Chrysothamnus-Ericameria connection". Phytologia 78: 61-65.
45. Nesom, G. L., Suh, Y., Morgan, D. R. & Simpson, B. B. 1990. Xylothamia (Asteraceae: Astereae), a new genus related to Euthamia. Sida 14: 101-116.
46. Noyes, R. D. & Rieseberg, L. H. 1999. ITS sequence data support a single origin for North American Astereae (Asteraceae) and reflect deep geographic divisions in Aster s. l. Amer. J. Bot. 68: 398-412.
47. Nuttall, T. 1841. Descriptions of new species and genera of plants in the natural order of the Compositae. Trans. Amer. Philos. Soc. 7: 283-453.
48. Ornduff, R. & Bohm, B. A. 1975. Relationships of Tracyina and Rigiopappus (Compositae). Madroño 23: 53-55.
49. Posada, D. & Crandall, K. A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
50. Rannala, B. & Yang, Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Molec. Evol. 43: 304-311.
51. Raven, P. H. & Kyhos, D. W. 1961. Chromosome numbers in Compositae. II. Helenieae. Amer. J. Bot. 48: 842-850.
52. Roberts, R. P. 2002. Phylogeny of Ericameria, Chrysothamnus and related genera (Asteraceae: Astereae) based on nuclear ribosomal DNA sequence data. Ph.D. thesis, Louisiana State Univ., Baton Rouge.
53. Roberts, R. P. & Urbatsch, L. E. In press. Molecular phylogeny of Chrysothamnus and related genera (Asteraceae, Astereae) based on nuclear ribosomal 3′ ETS and ITS sequence data. Syst. Bot.
54. Robinson, H. & Brettell, R. D. 1973. Tribal revisions in the Asteraceae. V. The relationship of Rigiopappus. Phytologia 26: 69-70.
55. Shimodaira, H. & Hasegawa, M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molec. Biol. Evol. 16: 1114-1116.
56. Sikes, D. S. & Lewis, P. O. 2001. PAUPRat: A Tool to Implement Parsimony Ratchet Searches Using PAUP*. Distributed by the authors. Department of Ecology and Evolutionary Biology, Univ. Connecticut, Storrs.
57. Swofford, D. L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
58. Swofford, D. L., Olsen, G. J., Waddell, P. J. & Hillis, D. M. 1996. Phylogenetic inference. Pp. 407-514 in: Hillis, D. M., Moritz, C. & Mable, B. K. (eds.), Molecular Systematics, ed. 2. Sinauer Associates, Sunderland, Massachusetts.
59. Thompson, J. D., Higgins, D. G. & Gibson, T. J. 1994. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22: 4673-4680.
60. Torrey, J. & Gray, A. 1842. Flora of North America, vol. 2. Riley and Putnam, London.
61. Urbatsch, L. E. 1975. Systematic study of Haplopappus section Ericameria. P. 62 in: Abstracts of Papers. Botanical Society of America, Lawrence, Kansas.
62. Urbatsch, L. E. 1976. Systematics of the Ericameria cuneata complex (Compositae, Astereae). Madroño 23: 338-345.
63. Urbatsch, L. E. 1978. The Chihuahuan Desert species of Ericameria (Compositae: Astereae). Sida 7: 298-303.
64. Urbatsch, L. E., Baldwin, B. G. & Donoghue, M. J. 2000. Phylogeny of the coneflowers and relatives (Heliantheae: Asteraceae) based on nuclear rDNA internal transcribed spacer (ITS) sequences and chloroplast DNA restriction site data. Syst. Bot. 25: 539-565.
65. Urbatsch, L. E., Roberts, R. P. & Karaman, V. In press. Phylogenetic evaluation of Xylothamia, Gundlachia, and related genera (Asteraceae, Astereae) based on ETS and ITS nrDNA sequence data. Amer. J. Bot. 90.
66. Urbatsch, L. E. & Wussow, J. R. 1979. The taxonomic affinities of Haplopappus linearifolius (Asteraceae-Astereae). Brittonia 31: 265-275.
67. Van Horn, G. S. 1973. The taxonomic status of Pentachaeta and Chaetopappa with a revision of Pentachaeta. Univ. Calif. Publ. Bot. 65: 1-41.
68. Welsh, S. L. 1993. New taxa and new nomenclatural combinations in the Utah flora. Rhodora 95: 392-421.
69. Welsh, S. L., Atwood, N. D., Goodrich, S. & Higgins, L. C. 1987. A Utah Flora. Great Basin Natur. Mem. 9: 1-894.
70. White, T. J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in: Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J. (eds.), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, California.
71. Wiggins, I. L. 1933. New plants from Baja California. Contr. Dudley Herb. 1: 161-187.
72. Yang, Z. 1994a. Estimating the pattern of nucleotide substitution. J. Molec. Evol. 39:105-111.
73. Yang, Z. 1994b. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Molec. Evol. 39: 306-314.
74. Zharkikh, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Molec. Evol. 39: 315-329.