Seasonal variation of phenol/benzoate-degrading iron-reducing bacteria in irrigated tropical paddy soils as affected by some management practices

Journal of General and Applied Microbiology

Volumn 49, Issue 1, 2003, Pages 37-49

  Lu, Wen Jing ^a   Wang, Hong Tao ^a   Huang, Chang Yong ^b   Reichardt, Wolfgang ^c  

^a TSINGHUA UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

^c INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Benzoate degrading iron reducing bacteria (B IRB); Irrigated paddy soil; Phenol degrading iron reducing bacteria (P IRB); Population density; Soil management practice

Indexed keywords

AROMATIC COMPOUND; BENZOIC ACID; CARBON; FERRIC ION; NITROGEN; PHENOL;

AERATION; ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BIODEGRADATION; CARBON SOURCE; CONTROLLED STUDY; CROP MANAGEMENT; IRRIGATION (AGRICULTURE); MOST PROBABLE NUMBER METHOD; MULTIVARIATE ANALYSIS; NONHUMAN; PHILIPPINES; PLANT GROWTH; POPULATION DENSITY; POPULATION GROWTH; POPULATION SIZE; REDUCTION; RHIZOSPHERE; RICE; SEASONAL VARIATION; SOIL ANALYSIS; SOIL MANAGEMENT; SOIL MICROFLORA; TROPICS;

AGRICULTURE; BACTERIA; BENZOATES; BIODEGRADATION, ENVIRONMENTAL; CULTURE MEDIA; IRON; NITROGEN; ORYZA SATIVA; OXIDATION-REDUCTION; PESTICIDES; PHENOL; RHIZOME; SEASONS; SOIL MICROBIOLOGY; TROPICAL CLIMATE;

BACTERIA (MICROORGANISMS);

EID: 0037734129     PISSN: 00221260     EISSN: None     Source Type: Journal    
DOI: 10.2323/jgam.49.37     Document Type: Article

References (35)

1. Aprill, W. A. and Sims, R. C. (1990) Evaluation of the use of prairie grasses for stimulating polycyclic aromatic hydrocarbon treatment in soil. Chemosphere, 20, 253-265.
2. Box, J. D. (1983) Investigation of the folin-ciocalteau phenol reagent for the determination of polyphenolic substances in natural waters. Water Res., 17, 511-525.
3. Briones, A. M., Jr. and Reichardt, W. (1999) Estimating microbial population counts by "most probably number" using Microsoft Excel. J. Microbiol.. Methods, 35, 157-161.
4. Crawford, J. J., Traina, S. J., and Tuovinen, O. H. (1998) Biodegradation of benzoate with nitrate as electron acceptor at different redox potentials in sand column microcosms. Biol. Fertil. Soils, 27, 71-78.
5. Escoffier, S., Ollivier, B., LeMer, J., Garcin, J., and Roger, P. (1998) Evidence and quantification of thiosulfate reducers unable to reduce sulfate in ricefield soils. Eur. J. Soil Biol., 34, 69-74.
6. Freney, J. R., Jacq, V. A., and Baldensperger, J. F. (1982) The significance of the biological sulfur cycle in rice production. In Microbiology of Tropical Soils and Plant Productivity, ed. by Dommergues, Y. D. and Diem, H. G., Martinus Nijhofflw Junk Publishers, The Hague, pp. 271-317.
7. Greenwood, N. N. and Earnshaw, A. (1984) Chemistry of the Elements, Pergamon Press, Oxford, pp. 264-281.
8. Gomez, K. A. and Gomez, A. A. (1984) Statistical Procedures for Agricultural Research, 2nd ed., Wiley, New York, USA, pp. 680-683.
9. Häggblom, M. M., Rivera, M. D., and Young, L. Y. (1993) Influence of alternative electron acceptors on the anaerobic biodegradability of chlorinated phenol and benzoic acids. Appl. Environ. Microbiol., 59, 1162-1167.
10. Hsu, T. S. and Bartha, R. (1979) Accelerated mineralization of two organophosphate insecticides in the rhizosphere. Appl. Environ. Microbiol., 37, 36-41.
11. Londry, K. L. and Fedorak, P. M. (1993) Fluorophenols and 3-fluorobenzoate in phenol-degrading methanogenic cultures. Arch. Microbiol., 160, 137-143.
12. 3+ reduction. In Organic Substance and Sediments in Water, ed. by Baker, R. A., Lewis, Chelsea, MI, pp. 327-338.
13. 4+ reduction. Microbiol. Rev., 55, 259-287.
14. Lovley, D. R. (1993) Dissimilatory metal reduction. Annu. Rev. Microbiol., 47, 263-290.
15. Lovley, D. R., Greening, R. C., and Ferry, J. G. (1984) Rapidly growing rumen methanogenic organism that synthesizes coenzyme M and has a high affinity for formate. Appl. Environ. Microbiol., 48, 81-87.
16. Lovley, D. R. and Lonergan, D. J. (1990) Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron reducing organism, GS-15. Appl. Environ. Microbiol., 56, 1858-1860.
17. Lovley, D. R. and Phillips, E. J. P. (1986) Organic matter mineralization with reduction of ferric iron in anaerobic sediments. Appl. Environ. Microbiol., 51, 683-689.
18. 0 reduction by Pelobacter carbinolicus. Appl. Environ. Microbiol., 61, 2132-2138.
19. Lu, W. J. (2001) Dynamics of aromatic compounds degrading iron-reducing bacteria in irrigated tropical rice systems and characteristics of dominant groups isolated from paddy soils. PhD Thesis, Zhejiang University, Hangzhou, China, pp. 11-19.
20. Lu, W. J., Wang, H. T., Huang, C. Y., and Reichardt, W. (2002) Communities of iron(III)-reducing bacteria in irrigated tropical rice fields. Microb. Environ., 17, 170-178.
21. Nealson, K. H. and Little, B. (1997) Breathing manganese and iron: Solid-state respiration. Adv. Appl. Microbiol., 45, 213-239.
22. Nealson, K. H. and Myers, C. R. (1992) Microbial reduction of manganese and iron: New approaches to carbon cycling. Appl. Environ. Microbiol., 58, 439-443.
23. Olk, D. C., Cassman, K. G., Mahieu, N., and Randall, E. W. (1998) Conserved chemical properties of young humic acid fractions in tropical lowland soil under intensive irrigated rice cropping. Eur. J. Soil Sci., 49, 337-349.
24. Olk, D. C., Cassman, K. G., Randall, E. W., Kinchesh, P., Sanger, L. J., and Anderson, J. M. (1996) Changes in chemical properties of organic matter with intensified rice cropping in tropical lowland soil. Eur. J. Soil Sci., 47, 293-330.
25. Olofsdotter, M., Rebulanan, M., Madrid, A., Wang, D. L., Navarez, D., and Olk, D. C. (2002) Why phenolic acids are unlikely primary allelochemicals in rice. J. Chem. Ecol., 28, 229-242.
26. Olsen, R. A. and Bakken, L. R. (1987) Viability of soil bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups. Microbiol. Ecol., 13, 59-74.
27. Ottow, J. C. G. (1968) Evaluation of iron-reducing bacteria in soil and the physiological mechanism of iron reduction in Aerobacter aerogenes. Z. Allg. Mikrobiol., 8, 441-443.
28. Ottow, J. C. G. (1970) Selection, characterization and iron reduction capacity of nitrate reductaseless (nit-) mutants from iron reducing bacteria. Z Allg. Microbiol., 10, 37-41.
29. Ponnamperuma, F. N. (1972) The chemistry of submerged soils. Adv. Agron., 24, 29-96.
30. Reddy, B, R. and Sethunathan, N. (1983) Mineralization of parathion in the rice rhizosphere. Appl. Environ. Microbiol., 45, 826-829.
31. Revsbech, N. P., Pedersen, O., Reichardt, W., and Briones, A. (1999) Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions. Biol. Fertil. Soils, 29, 379-385.
32. Schink, B., Brune, A., and Schnell, S. (1992) Anaerobic degradation of aromatic compounds. In Microbial Degradation of Natural Products, ed. by Winkelmann, G., VCH Verlagsgesellschaft Weinheim, New York, pp. 219-242.
33. Wang, T. G. and Peverly, J. H. (1998) Screening a selective chelator pair for simultaneous determination of soils. Soil Sci. Plant Nutr., 33, 13-33.
34. Witt, C. (1997) Soil microbial biomass and nitrogen supply in irrigated lowland rice soils as affected by management practices. PhD Thesis, Wissenschaftlicher Fachverlag, Giessen, Germany, pp. 38-40.
35. Witt, C., Cassman, K. G., Ottow, J. C. G., and Biker, U. (1998) Soil microbial biomass and nitrogen supply in an irrigated lowland rice soils as affected by crop rotation and residue management. Biol. Fertil. Soils, 28, 71-80.