Identification of an allele of CLA1 associated with variegation in Arabidopsis thaliana

Physiologia Plantarum

Volumn 118, Issue 1, 2003, Pages 29-37

  Crowell, Dring N ^a   Packard, Clay E ^a   Pierson, Charles A ^a   Giner, José Luis ^b   Downes, Brian P ^a,c   Narasimha Chary, S ^a,d  

^a INDIANA UNIVERSITY   (United States)

^b STATE UNIVERSITY OF NEW YORK   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; BIOSYNTHESIS; CATALYSIS; CHROMOSOMES; PIGMENTS;

ISOPRENOID PIGMENTATION;

PLANTS (BOTANY);

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0037726581     PISSN: 00319317     EISSN: None     Source Type: Journal    
DOI: 10.1034/j.1399-3054.2003.00063.x     Document Type: Article

References (42)

1. Araki N, Kusumi K, Masamoto K, Niwa Y, Iba K (2000) Temperature-sensitive Arabidopsis mutant defective in 1-deoxy-D-xylulose 5-phosphate synthase within the plastid non-mevalonate pathway of isoprenoid biosynthesis. Physiol Plant 108: 19-24
2. Arigoni D, Sagner S, Latzel C, Eisenreich W, Bacher A, Zenk MH (1997) Terpenoid biosynthesis from 1-deoxy-D-xylulose in higher plants by intramolecular skeletal rearrangement. Proc Natl Acad Sci USA 94: 10600-10605
3. Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137-144
4. Bouvier F, d'Harlingue A, Suire C, Backhaus RA, Camara B (1998) Dedicated roles of plastid transketolases during the early onset of isoprenoid biogenesis in pepper fruits. Plant Physiol 117: 1423-1431
5. Campos N, Rodríguez-Concepción M, Seemann M, Rohmer M, Boronat A (2001) Identification of gcpE as a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway for isoprenoid biosynthesis in Escherichia coli. FEBS Lett 488: 170-173
6. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
7. Connolly JD, Hill RA (1992) Dictionary of Terpenoids. Chapman & Hall, London
8. Disch A, Hemmerlin A, Bach TJ, Rohmer M (1998) Mevalonate-derived isopentenyl diphosphate is the biosynthetic precursor of ubiquinone prenyl side chain in tobacco BY-2 cells. Biochem J 331: 615-621
9. Estévez JM, Cantero A, Reindl A, Reichler S, León P (2001) 1-deoxy-D-xylulose 5-phosphate synthase, a limiting enzyme for plastidic isoprenoid biosynthesis in plants. J Biol Chem 276: 22901-22909
10. Estévez JM, Cantero A, Romero C, Kawaide H, Jiménez LF, Kuzuyama T, Seto H, Kamiya Y, León P (2000) Analysis of the expression of CLA1, a gene that encodes the 1-deoxyxylulose 5-phosphate synthase of the 2-C-methyl-D-erythritol-4-phosphate pathway in Arabidopsis. Plant Physiol 124: 95-103
11. Flesch G, Rohmer M (1988) Prokaryotic hopanoids: the biosynthesis of the bacteriohopane skeleton - formation of isoprene units from two distinct acetate pools and a novel type of carbon/carbon linkage between a triterpene and D-ribose. Eur J Biochem 175: 405-411
12. Hahn FM, Eubanks LM, Testa CA, Blagg BSJ, Baker JA, Poulter CD (2001) 1-deoxy-D-xylulose 5-phosphate synthase, the gene product of open reading frame (ORF) 2816 and ORF 2895 in Rhodobacter capsulatus. J Bacteriol 183: 1-11
13. Hawkins CF, Borges A, Perham RN (1989) A common structural motif in thiamin pyrophosphate-binding enzymes. FEBS Lett 255: 77-82
14. Hecht S, Eisenreich W, Adam P, Amslinger S, Kis K, Bacher A, Arigoni D, Rohdich F (2001) Studies on the nonmevalonate pathway to terpenes: the role of the GcpE (IspG) protein. Proc Natl Acad Sci USA 98: 14837-14842
15. Hoeffler J-F, Hemmerlin A, Grosdemange-Billiard C, Bach TJ, Rohmer M (2002) Isoprenoid biosynthesis in higher plants and in Escherichia coli: on the branching in the methylerythritol phosphate pathway and the independent biosynthesis of isopentenyl diphosphate and dimethylallyl diphosphate. Biochem J 366: 573-583
16. Jarvis P, Lister C, Szabo V, Dean C (1994) Integration of CAPS markers into the RFLP map generated using recombinant inbred lines of Arabidopsis thaliana. Plant Mol Biol 24: 685-687
17. Jefferson RA (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5: 387-405
18. Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4: 403-410
19. Lange BM, Wildung MR, McCaskill D, Croteau R (1998) A family of transketolases that directs isoprenoid biosynthesis via a mevalonate-independent pathway. Proc Natl Acad Sci USA 95: 2100-2104
20. Lichtenthaler HK, Wellburn AR (1983) Determinations of total carotenoids and chlorophylls a and b of leaf extracts in different solvents. Biochem Soc Trans 11: 591-592
21. Lichtenthaler HK, Rohmer M, Schwender J (1997a) Two independent biochemical pathways for isopentenyl diphosphate and isoprenoid biosynthesis in higher plants. Physiol Plant 101: 643-652
22. Lichtenthaler HK, Schwender J, Disch A, Rohmer M (1997b) Biosynthesis of isoprenoids in higher plant chloroplasts proceeds via a mevalonate-independent pathway. FEBS Lett 400: 271-274
23. Lindqvist Y, Schneider G, Ermler U, Sundström M (1992) Three-dimensional structure of transoketolase, a thiamine diphosphate dependent enzyme, at 2.5 Å resolution. EMBO J 11: 2373-2379
24. Lister C, Dean C (1993) Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J 4: 745-750
25. Mandel MA, Feldmann KA, Herrera-Estrella L, Rocha-Sosa M, León P (1996) CLA1, a novel gene required for chloroplast development, is highly conserved in evolution. Plant J 9: 649-658
26. Michaels SD, Amasino RM (1998) A robust method for detecting single-nucleotide changes as polymorphic markers by PCR. Plant J 14: 381-385
27. Neff MM, Neff JD, Chory J, Pepper AE (1998) dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 14: 387-392
28. 477 is a determinant of the enantioselectivity in yeast transketolase. FEBS Lett 424: 49-52
29. Nilsson U, Meshalkina L, Lindqvist Y, Schneider G (1997) Examination of substrate binding in thiamin diphosphate-dependent transketolase by protein crystallography and site-directed mutagenesis. J Biol Chem 272: 1864-1869
30. Reizer J, Reizer A, Bairoch A, Saier MH Jr (1993) A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination. Res Microbiol 144: 341-347
31. Rohdich F, Hecht S, Gärtner K, Adam P, Krieger C, Amslinger S, Arigoni D, Bacher A, Eisenreich W (2002) Studies on the non-mevalonate terpene biosynthetic pathway: metabolic role of IspH (LytB) protein. Proc Natl Acad Sci USA 99: 1158-1163
32. Rohmer M, Knani M, Simonin P, Sutter B, Sahm H (1993) Isoprenoid biosynthesis in bacteria: a novel pathway for the early steps leading to isopentenyl diphosphate. Biochem J 295: 517-524
33. Rohmer M, Seemann M, Horbach S, Bringer-Meyer S, Sahm H (1996) Glyceraldehyde 3-phosphate and pyruvate as precursors of isoprenic units in an alternative non-mevalonate pathway for terpenoid biosynthesis. J Am Chem Soc 118: 2564-2566
34. Schneider G, Lindqvist Y (1998) Crystallography and mutagenesis of transketolase: mechanistic implications for enzymatic thiamin catalysis. Biochem Biophys Acta 1385: 387-398
35. Schwender J, Müller C, Zeidler J, Lichtenthaler HK (1999) Cloning and heterologous expression of a cDNA encoding 1-deoxy-D-xylulose-5-phosphate reductoisomerase of Arabidopsis thaliana. FEBS Lett 455: 140-144
36. Schwender J, Seemann M, Lichtenthaler HK, Rohmer M (1996) Biosynthesis of isoprenoids (carotenoids, sterols, prenyl side-chains of chlorophylls and plastoquinone) via a novel pyruvate/glyceraldehyde 3-phosphate non-mevalonate pathway in the green alga Scenedesmus obliquus. Biochem J 316: 73-80
37. Tautz D (1989) Hypervariability of simple sequences as a general source of polymorphic DNA markers. Nucl Acids Res 17: 6463-6471
38. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388-396
39. Weining S, Langridge P (1991) Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theor Appl Genet 82: 209-216
40. Wikner C, Meshalkina L, Nilsson U, Nikkola M, Lindqvist Y, Schneider G (1994) Analysis of an invariant cofactor-protein interaction in thiamin diphosphate-dependent enzymes by site-directed mutagenesis. J Biol Chem 269: 32144-32150
41. Wikner C, Nilsson U, Meshalkina L, Udekwu C, Lindqvist Y, Schneider G (1997) Identification of catalytically important residues in yeast transketolase. Biochemistry 36: 15643-15649
42. Williams MNV, Pande N, Nair M, Mohan M, Bennet J (1991) Restriction fragment length polymorphism analysis of polymerase chain reaction products amplified from mapped loci of rice (Oryza sativa L.) genomic DNA. Theor Appl Genet 82: 489-498