Chloroplast DNA phylogeography reveals colonization history of a neotropical tree, Cedrela odorata L., in Mesoamerica

Molecular Ecology

Volumn 12, Issue 6, 2003, Pages 1451-1460

  Cavers, S ^a   Navarro, C ^b   Lowe, A J ^a  

^a CENTRE FOR ECOLOGY AND HYDROLOGY   (United Kingdom)

^b CATIE   (Costa Rica)

Author keywords

Cedrela odorata; Differentiation; Dispersal; Meliaceae; Spanish Cedar; Universal cpDNA markers

Indexed keywords

CEDRELA; CENTRAL AMERICA; DNA, CHLOROPLAST; GEOGRAPHY; HAPLOTYPES; MODELS, BIOLOGICAL; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POPULATION DYNAMICS; SPECIES SPECIFICITY; VARIATION (GENETICS);

CEDRELA ODORATA; EMBRYOPHYTA; ISTHMIA; MELIACEAE;

EID: 0037703010     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01810.x     Document Type: Article

References (59)

1. Avise JC, Arnold J, Ball RM et al. (1987) Intraspecific phylogeography: the DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics, 18, 489-522.
2. Bawa K, Perry DR, Beach JH (1985) Reproductive biology of tropical lowland rainforest trees. I: Sexual systems and incompatibility mechanisms. American Journal of Botany, 72, 331-345.
3. Bermingham E, Martin PA (1998) Comparative mtDNA phylogeography of neotropical freshwater fishes: testing shared history to infer the evolutionary landscape of lower Central America. Molecular Ecology, 7, 499-517.
4. Bermingham E, Moritz C (1998) Comparative phylogeography: concepts and applications. Molecular Ecology, 7, 367-369.
5. Boshier DH (1984) The international provenance trial of Cordia alliodora (R & P) Oken in Costa Rica. In: Provenance and Genetic Improvement Strategies in Tropical Forest Trees. Proceedings of a Joint Work Conference, Mutare, Zimbabwe, April 1984 (eds Barnes RD, Gibson GL), pp. 168-187. Department of Forestry, University of Oxford, Oxford.
6. Burnham RJ, Graham A (1999) The history of neotropical vegetation: new developments and status. Annals of the Missouri Botanical Garden, 86, 546-589.
7. Caron H, Dumas S, Marque G et al. (2000) Spatial and temporal distribution of chloroplast DNA polymorphism in a tropical tree species. Molecular Ecology, 9, 1089-1098.
8. Chamberlain JR (1998) Isozyme variation in Calliandra calothyrsus (Leguminosae): its implications for species delimitation and conservation. American Journal of Botany, 85, 37-47.
9. Chaplin GE (1980) Progress with provenance exploration and seed collection of Cedrela spp. In: Proceedings of the 11th Commonwealth Forestry Conference, pp. 1-17. Commonwealth Forestry Institute, Oxford.
10. Chase MR, Boshier DH, Bawa KS (1995) Population genetics of Cordia alliodora (Boraginaceae), a neotropical tree, 1. Genetic variation in natural populations. American Journal of Botany, 82, 468-475.
11. Coney PJ (1982) Plate tectonic constraints on the biogeography of Middle America and the Caribbean region. Annals of the Missouri Botanical Garden, 69, 432-443.
12. Degen B, Petit RJ, Kremer A (2001) SGS - Spatial Genetic Software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. Journal of Heredity, 92, 447-449.
13. Demesure B, Sodzi N, Petit RJ (1995) A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology, 4, 129-131.
14. Dumolin-Lapegue S, Demesure B, Fineschi S, Le Corre V, Petit RJ (1997a) Phylogeographic structure of white oaks throughout the European continent. Genetics, 146, 1475-1487.
15. Dumolin-Lapegue S, Pemonge M-H, Petit RJ (1997b) An enlarged set of consensus primers for the study of organelle DNA in plants. Molecular Ecology, 6, 393-397.
16. Dutech C, Maggia L, Joly HI (2000) Chloroplast diversity in Vouacapoua americana (Caesalpinaceae), a neotropical forest tree. Molecular Ecology, 9, 1427-1432.
17. El Mousadik A, Petit RJ (1996) Chloroplast phylogeography of the argan tree of Morocco. Molecular Ecology, 5, 547-555.
18. Ennos RA, Sinclair WT, Hu X-S, Langdon A (1999) Using organelle markers to elucidate the history, ecology and evolution of plant populations. In: Molecular Systematics and Plant Evolution (eds Hollingsworth PM, Bateman RM, Gornall RJ), pp. 1-19. Taylor & Francis Ltd, London.
19. Excoffier L, Smouse PE (1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics, 136, 343-359.
20. Gentry AH (1982a) Phytogeographic patterns as evidence for a Choco refuge. In: Biological Diversification in the Tropics (ed. Prance GT), pp. 112-136. Columbia University Press, New York.
21. Gentry AH (1982b) Neotropical floristic diversity: phytogeographical connections between Central and South America, Pleistocene climatic fluctuations, or an accident of the Andean orogeny? Annals of the Missouri Botanical Garden, 69, 557-593.
22. Gillies ACM, Cornelius JP, Newton AC et al. (1997) Genetic variation in Costa Rican populations of the tropical timber species Cedrela odorata L., assessed using RAPDs. Molecular Ecology, 6, 1133-1145.
23. Gillies ACM, Navarro C, Lowe AJ et al. (1999) Genetic diversity in mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity, 83, 722-732.
24. Graham A (1991) Studies in neotropical paleobotany X. The Pliocene communities of Panama - composition, numerical representations and paleocommunity paleoenvironmental reconstructions. Annals of the Missouri Botanical Garden, 78, 465-475.
25. Graham A (1999) Studies in Neotropical paleobotany. XIII. An Oligo-Miocene palynoflora from Simojovel (Chiapas, Mexico). American Journal of Botany, 86, 17-31.
26. Gregorius HR (1978) The concept of genetic diversity and its formal relationship to heterozygosity and genetic distance. Mathematical Bioscience, 41, 253-271.
27. Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Molecular Ecology, 8, 521-522.
28. Hewitt G (2000) The genetic legacy of the Ice Ages. Nature, 405, 907-913.
29. Islebe GA, Hooghiemstra H (1997) Vegetation and climate history of montane Costa Pica since the last glacial. Quaternary Science Reviews, 16, 589-604.
30. King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology, 7, 1151-1161.
31. Lamb AFA (1968) Fast Growing Timbers of the Lowland Tropics, No. 2 Cedrela odorata L. Commonwealth Forestry Institute, University of Oxford, Oxford.
32. Lavin M, Mathews S, Hughes C (1991) Chloroplast DNA variation in Gliricidia sepium (Leguminosae): intraspecific phylogeny and tokogeny. American Journal of Botany, 78, 1576-1585.
33. Leyden BW (1984) Guatemalan forest synthesis after Pleistocene aridity. Proceedings of the National Academy of Sciences, USA, 81, 4856-4859.
34. Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature, 403, 853-858.
35. Navarro C, Ward S, Hernandez M (2002) The tree Cedrela odorata (Meliaceae): a morphologically subdivided species in Costa Rica. Revista Biologia Tropical, 50, 21-29.
36. Newton AC, Cornelius JP, Mesen JF, Leakey RRB (1995) Genetic variation in apical dominance of Cedrela odorata seedlings in response to decapitation. Silvae Genetica, 44, 146-150.
37. Newton AC, Allnutt TR, Gillies ACM, Lowe AJ, Ennos RA (1999a) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Evolution and Ecology, 14, 140-145.
38. Newton AC, Watt AD, Lopez F et al. (1999b) Genetic variation in host susceptibility to attack by the mahogany shoot borer, Hypsipylla grandella (Zeller). Agricultural and Forest Entomology, 1, 11-18.
39. Pennington TD, Styles BT, Taylor DAH (1981) A Monograph of the Neotropical Meliaceae. New York Botanical Gardens, New York.
40. Petit RJ, Kremer A, Wagner DB (1993) Geographic structure of chloroplast DNA polymorphisms in European oaks. Theoretical and Applied Genetics, 87, 122-128.
41. Petit RJ, Pineau E, Demesure B et al. (1997) Chloroplast DNA footprints of postglacial recolonisation by oaks. Proceedings of the National Academy of Sciences, USA, 94, 9996-10001.
42. Petit RJ, Brewer S, Bordacs S et al. (2002a) Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecology and Management, 156, 49-74.
43. Petit RJ, Csaikl UM, Bordacs S et al. (2002b) Chloroplast DNA variation in European white oaks. Phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecology and Management, 156, 5-26.
44. Pons O, Petit RJ (1995) Estimation, variance and optimal sampling of gene diversity I. Haploid locus. Theoretical and Applied Genetics, 90, 462-470.
45. Pons O, Petit RJ (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics, 144, 1237-1245.
46. Prance GT (1982a) A review of the phytogeographic evidences for Pleistocene climate changes in the Neotropics. Annals of the Missouri Botanical Garden, 69, 594-624.
47. Prance GT (1982b) Forest refuges: evidence from woody angiosperms. In: Biological Diversification in the Tropics (ed. Prance GT), pp. 137-158. Columbia University Press, New York.
48. Raspe O, Saumitou-Laprade P, Cuguen J, Jacquemart A-L (2000) Chloroplast DNA haplotype variation and population differentiation in Sorbus aucuparia L. (Rosaceae: Maloideae). Molecular Ecology, 9, 1113-1122.
49. Raven PH, Axelrod DI (1974) Angiosperm biogeography and past continental movements. Annals of the Missouri Botanical Garden, 61, 539-673.
50. Rodan BD, Newton AC, Verissimo A (1992) Mahogany conservation: status and policy initiatives. Environmental Conservation, 19, 331-342.
51. Savage JM (1982) The enigma of the Central American herpetofauna: dispersals or vicariance. Annals of the Missouri Botanical Garden, 69, 464-547.
52. Sewell MM, Parks CR, Chase MW (1996) In traspecific chloroplast DNA variation and biogeography of North American Liriodendron L. (Magnoliaceae). Evolution, 50, 1147-1154.
53. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105-1109.
54. Toledo VM (1982) Pleistocene changes of vegetation in tropical Mexico. In: Biological Diversification in the Tropics (ed. Prance GT), pp. 93-111. Columbia University Press, New York.
55. Tremblay NO, Schoen DJ (1999) Molecular phylogeography of Dndas integrifolia: glacial refugia and postglacial recolonisation. Molecular Ecology, 8, 1187-1198.
56. Valera FP (1997) Genetic Resources of Swietenia and Cedrela in the Neotropics: Proposals for Coordinated Action. Forest Resources Division, Forestry Department, Food and Agriculture Organisation of the United Nations, Rome.
57. Williams M, Dunkerley D, de Deckker P, Kershaw P, Chappell J (1998) Quaternary Environments. Arnold, London.
58. Wolfe KH, Li W-H, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNAs. Proceedings of the National Academy of Sciences, USA, 84, 9054-9058.
59. Wright S (1969) Evolution and the Genetics of Populations, Vol. 2 The Theory of Gene Frequencies. University of Chicago Press, Chicago.