메뉴 건너뛰기




Volumn 12, Issue 4, 2003, Pages 831-844

Ancestral polymorphisms in genetic markers obscure detection of evolutionarily distinct populations in the endangered Florida grasshopper sparrow (Ammodramus savannarum floridanus)

Author keywords

Ammodramus savannarum floridanus; ESU; Florida grasshopper sparrow; Phylogeography; Retained ancestral polymorphism

Indexed keywords

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; CONSERVATION OF NATURAL RESOURCES; DNA PRIMERS; DNA, MITOCHONDRIAL; GENETIC MARKERS; GEOGRAPHY; HAPLOTYPES; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; POPULATION DYNAMICS; SONGBIRDS; UNITED STATES; VARIATION (GENETICS);

EID: 0037699012     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01774.x     Document Type: Article
Times cited : (93)

References (59)
  • 1
    • 0032934034 scopus 로고    scopus 로고
    • Parentage and kinship analyses in an obligate brood parasitic bird, the brown-headed cowbird (Molothrus ater) using microsatellite DNA markers
    • Alderson GA, Gibbs HL, Sealy SG (1999) Parentage and kinship analyses in an obligate brood parasitic bird, the brown-headed cowbird (Molothrus ater) using microsatellite DNA markers. Journal of Heredity, 90, 182-190.
    • (1999) Journal of Heredity , vol.90 , pp. 182-190
    • Alderson, G.A.1    Gibbs, H.L.2    Sealy, S.G.3
  • 2
    • 0032557042 scopus 로고    scopus 로고
    • Pleistocene phylogeographic effects on avian populations and the speciation process
    • Avise JC, Walker D (1998) Pleistocene phylogeographic effects on avian populations and the speciation process. Proceedings of the Royal Society of London, Series B, 265, 457-463.
    • (1998) Proceedings of the Royal Society of London, Series B , vol.265 , pp. 457-463
    • Avise, J.C.1    Walker, D.2
  • 3
    • 0023496815 scopus 로고
    • Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics
    • Avise JC, Arnold J, Ball RM et al. (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Reviews of Ecology and Systematics, 18, 489-522.
    • (1987) Annual Reviews of Ecology and Systematics , vol.18 , pp. 489-522
    • Avise, J.C.1    Arnold, J.2    Ball, R.M.3
  • 4
    • 29244489470 scopus 로고
    • Molecular genetic relationships of the extinct dusky seaside sparrow
    • Avise JC, Nelson WS (1989) Molecular genetic relationships of the extinct dusky seaside sparrow. Science, 243, 646-648.
    • (1989) Science , vol.243 , pp. 646-648
    • Avise, J.C.1    Nelson, W.S.2
  • 5
    • 0002447606 scopus 로고    scopus 로고
    • Mitochondrial control region sequences
    • ed. Mindell DP. Academic Press, San Diego
    • Baker AJ, Marshall HD (1997) Mitochondrial control region sequences. In: Avian Molecular Evolution and Systematics (ed. Mindell DP), pp. 51-82. Academic Press, San Diego.
    • (1997) Avian Molecular Evolution and Systematics , pp. 51-82
    • Baker, A.J.1    Marshall, H.D.2
  • 6
    • 0000228672 scopus 로고
    • Mitochondrial DNA phylogeographic differentiation among avian populations and the evolutionary significance of subspecies
    • Ball RM, Avise JC (1992) Mitochondrial DNA phylogeographic differentiation among avian populations and the evolutionary significance of subspecies. Auk, 109, 626-636.
    • (1992) Auk , vol.109 , pp. 626-636
    • Ball, R.M.1    Avise, J.C.2
  • 7
    • 4244073276 scopus 로고
    • The genetics of bird migration
    • Berthold P, Helbig AJ (1992) The genetics of bird migration. Ibis, 134, S34-S40.
    • (1992) Ibis , vol.134
    • Berthold, P.1    Helbig, A.J.2
  • 8
    • 0033450840 scopus 로고    scopus 로고
    • The historical pattern of gene flow among migratory and nonmigratory populations of prairie warblers (Aves: Parulinae)
    • Buerkle CA (1999) The historical pattern of gene flow among migratory and nonmigratory populations of prairie warblers (Aves: Parulinae). Evolution, 53, 1915-1924.
    • (1999) Evolution , vol.53 , pp. 1915-1924
    • Buerkle, C.A.1
  • 11
    • 0031281644 scopus 로고    scopus 로고
    • Isolation of microsatellite DNA markers from a passerine bird, the yellow warbler
    • Dawson R, Gibbs HL, Hobson KA, Yzerniac S (1997) Isolation of microsatellite DNA markers from a passerine bird, the yellow warbler. Heredity, 79, 506-514.
    • (1997) Heredity , vol.79 , pp. 506-514
    • Dawson, R.1    Gibbs, H.L.2    Hobson, K.A.3    Yzerniac, S.4
  • 12
    • 0028999003 scopus 로고
    • Use of filtered pipet tips to elute DNA from agarose gels
    • Dean AD, Greenwald JE (1995) Use of filtered pipet tips to elute DNA from agarose gels. Biotechniques, 18, 980.
    • (1995) Biotechniques , vol.18 , pp. 980
    • Dean, A.D.1    Greenwald, J.E.2
  • 13
    • 0002640195 scopus 로고
    • Florida grasshopper sparrow breeding distribution and abundance in 1984
    • Delany MF, Cox JA (1986) Florida grasshopper sparrow breeding distribution and abundance in 1984. Florida Field Naturalist, 14, 100-104.
    • (1986) Florida Field Naturalist , vol.14 , pp. 100-104
    • Delany, M.F.1    Cox, J.A.2
  • 14
    • 0033933851 scopus 로고    scopus 로고
    • Genetic variability among populations of the Florida grasshopper sparrow
    • Delany MF, Giesel JT, Brazeau DA (2000) Genetic variability among populations of the Florida grasshopper sparrow. Journal of Wildlife Management, 64, 631-636.
    • (2000) Journal of Wildlife Management , vol.64 , pp. 631-636
    • Delany, M.F.1    Giesel, J.T.2    Brazeau, D.A.3
  • 17
    • 0038609900 scopus 로고
    • Genetics and Biometry Laboratory, Department of, Anthropology, University of Geneva, Geneva, Switzerland
    • Excoffier L (1993) MINISPNET. Genetics and Biometry Laboratory, Department of, Anthropology, University of Geneva, Geneva, Switzerland.
    • (1993) MINISPNET
    • Excoffier, L.1
  • 18
    • 0000671204 scopus 로고
    • Endangered and threatened wildlife and plants determination of endangered status of Florida grasshopper sparrow
    • Federal Register (1986) Endangered and threatened wildlife and plants determination of endangered status of Florida grasshopper sparrow. Federal Register, 51, 27492-27495.
    • (1986) Federal Register , vol.51 , pp. 27492-27495
  • 20
    • 6544233429 scopus 로고    scopus 로고
    • Characterization of microsatellite loci for a neotropical migrant songbird, the Swainson's thrush (Catharus ustulatus)
    • Gibbs HL, Tabak LM, Hobson K (1999) Characterization of microsatellite loci for a neotropical migrant songbird, the Swainson's thrush (Catharus ustulatus). Molecular Ecology, 8, 1151.
    • (1999) Molecular Ecology , vol.8 , pp. 1151
    • Gibbs, H.L.1    Tabak, L.M.2    Hobson, K.3
  • 21
    • 0030766607 scopus 로고    scopus 로고
    • STCalc: A collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance
    • STCalc: a collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance. Molecular Ecology, 6, 881-885.
    • (1997) Molecular Ecology , vol.6 , pp. 881-885
    • Goodman, S.J.1
  • 22
    • 85007320774 scopus 로고
    • FSTAT, Version 1.2: A computer program to calculate F-statistics
    • Goudet J (1995) FSTAT, Version 1.2: a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
    • (1995) Journal of Heredity , vol.86 , pp. 485-486
    • Goudet, J.1
  • 23
    • 0031847494 scopus 로고    scopus 로고
    • Morphological adaptation with no mitochondrial DNA differentiation in the Coastal Plain swamp sparrow
    • Greenberg R, Codero P, Droege S, Fleischer RC (1998) Morphological adaptation with no mitochondrial DNA differentiation in the Coastal Plain swamp sparrow. Auk, 115, 706-712.
    • (1998) Auk , vol.115 , pp. 706-712
    • Greenberg, R.1    Codero, P.2    Droege, S.3    Fleischer, R.C.4
  • 24
    • 0036006033 scopus 로고    scopus 로고
    • Time to the most recent common ancestor and divergence times of populations of common chaffinches (Fringilla coelebs) in Europe and North Africa: Insights into pleistocene refugia and current levels of migration
    • Griswold C, Baker AJ (2002) Time to the most recent common ancestor and divergence times of populations of common chaffinches (Fringilla coelebs) in Europe and North Africa: insights into pleistocene refugia and current levels of migration. Evolution, 56, 143-153.
    • (2002) Evolution , vol.56 , pp. 143-153
    • Griswold, C.1    Baker, A.J.2
  • 26
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 28
    • 0030465919 scopus 로고    scopus 로고
    • Indo-Pacific population structure and evolutionary history of the coconut crab (Birgus latro)
    • Lavery S, Mortiz C, Fielder DR (1996) Indo-Pacific population structure and evolutionary history of the coconut crab (Birgus latro). Molecular Ecology, 5, 557-570.
    • (1996) Molecular Ecology , vol.5 , pp. 557-570
    • Lavery, S.1    Mortiz, C.2    Fielder, D.R.3
  • 29
    • 0031039450 scopus 로고    scopus 로고
    • Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris)
    • Marshall HD, Baker AJ (1997) Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Molecular Biology and Evolution, 14, 173-184.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 173-184
    • Marshall, H.D.1    Baker, A.J.2
  • 30
    • 0028151937 scopus 로고
    • Applications of mitochondrial DNA analysis in conservation: A critical review
    • Moritz C (1994) Applications of mitochondrial DNA analysis in conservation: a critical review. Molecular Ecology, 3, 401-411.
    • (1994) Molecular Ecology , vol.3 , pp. 401-411
    • Moritz, C.1
  • 31
    • 0002267691 scopus 로고
    • Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation
    • eds Nevo E, Karlin S. Academic Press, New York
    • Neigel JE, Avise JC (1986) Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation. In: Evolutionary Processes and Theory (eds Nevo E, Karlin S), pp. 515-534. Academic Press, New York.
    • (1986) Evolutionary Processes and Theory , pp. 515-534
    • Neigel, J.E.1    Avise, J.C.2
  • 32
    • 0037595817 scopus 로고    scopus 로고
    • Nielsen R (2002) MDIV software. Available at http://www.biom.cornell.edu/Homepages/Rasmus_Nielsen/files.html
    • (2002) MDIV Software
    • Nielsen, R.1
  • 33
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: An MCMC approach
    • Nielsen R, Wakeley JW (2001) distinguishing migration from isolation: an MCMC approach. Genetics, 158, 885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.W.2
  • 35
    • 0000262278 scopus 로고
    • GENEPOP Version 1.2: Population Genetics Software for Exact Tests and Ecumenicism
    • Raymond M, Rousset F (1995) GENEPOP version 1.2: population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
    • (1995) Journal of Heredity , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 36
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 37
    • 0001047660 scopus 로고
    • An application of genealogical concordance principles to the taxonomy and evolutionary history of the sharp-tailed sparrow (Ammodramus caudacutus)
    • Rising JD, Avise JC (1993) An application of genealogical concordance principles to the taxonomy and evolutionary history of the sharp-tailed sparrow (Ammodramus caudacutus). Auk, 110, 844-856.
    • (1993) Auk , vol.110 , pp. 844-856
    • Rising, J.D.1    Avise, J.C.2
  • 38
    • 0002086307 scopus 로고
    • Species conservation and the dilemma of the subspecies
    • Ryder OA (1986) Species conservation and the dilemma of the subspecies. Trends in Ecology and Evolution, 1, 9-10.
    • (1986) Trends in Ecology and Evolution , vol.1 , pp. 9-10
    • Ryder, O.A.1
  • 41
    • 0001881618 scopus 로고
    • Preservation of avian blood and tissue samples for DNA analyses
    • Seutin G, White BN, Boag PT (1991) Preservation of avian blood and tissue samples for DNA analyses. Canadian Journal of Zoology, 69, 82-90.
    • (1991) Canadian Journal of Zoology , vol.69 , pp. 82-90
    • Seutin, G.1    White, B.N.2    Boag, P.T.3
  • 42
    • 0001940596 scopus 로고    scopus 로고
    • Aerial assessment of potential Florida grasshopper sparrow habitat: Conservation in a fragmented landscape
    • Shriver WG, Vickery, PD (1999) Aerial assessment of potential Florida grasshopper sparrow habitat: conservation in a fragmented landscape. Florida Field Naturalist, 27, 1-9.
    • (1999) Florida Field Naturalist , vol.27 , pp. 1-9
    • Shriver, W.G.1    Vickery, P.D.2
  • 43
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462.
    • (1995) Genetics , vol.139 , pp. 457-462
    • Slatkin, M.1
  • 44
    • 0031884718 scopus 로고    scopus 로고
    • Numts: A challenge for avian systematics and population biology
    • Sorenson MD, Quinn TW (1998) Numts: a challenge for avian systematics and population biology. Auk, 115, 214-221.
    • (1998) Auk , vol.115 , pp. 214-221
    • Sorenson, M.D.1    Quinn, T.W.2
  • 45
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Molecular Biology and Evolution, 13, 964-969.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 47
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 48
    • 0035901605 scopus 로고    scopus 로고
    • The molecular basis of an avian plumage polymorphism in the wild: A melanocortin-1-receptor point mutation is perfectly associated with the melanic plumage morph of the bananaquit, Coereba flaveola
    • Theron E, Hawkins K, Bermingham E, Ricklefs RE, Mundy NI (2001) The molecular basis of an avian plumage polymorphism in the wild: a melanocortin-1-receptor point mutation is perfectly associated with the melanic plumage morph of the bananaquit, Coereba flaveola. Current Biology, 11, 550-557.
    • (2001) Current Biology , vol.11 , pp. 550-557
    • Theron, E.1    Hawkins, K.2    Bermingham, E.3    Ricklefs, R.E.4    Mundy, N.I.5
  • 49
    • 0003561658 scopus 로고    scopus 로고
    • US Fish and Wildlife Service, Atlanta, GA
    • US Fish and Wildlife Service (1999) South Florida multi-species recovery plan. US Fish and Wildlife Service, Atlanta, GA.
    • (1999) South Florida Multi-Species Recovery Plan
  • 50
    • 0031936063 scopus 로고    scopus 로고
    • Genetic population structure of the winter moth (Operophtera brumata L.) (Lepidoptera, Geometridae) in a fragmented landscape
    • Van Dongen S, Backeljau T, Matthysen E, Dhondt AA (1998) Genetic population structure of the winter moth (Operophtera brumata L.) (Lepidoptera, Geometridae) in a fragmented landscape. Heredity, 80, 92-100.
    • (1998) Heredity , vol.80 , pp. 92-100
    • Van Dongen, S.1    Backeljau, T.2    Matthysen, E.3    Dhondt, A.A.4
  • 51
    • 0000607143 scopus 로고    scopus 로고
    • Grasshopper sparrow (Ammodramus savannarum)
    • (eds Poole A, Gill F). Academy of Natural Sciences, Philadelphia/American Ornithologists' Union, Washington, DC
    • Vickery PD (1996) Grasshopper sparrow (Ammodramus savannarum). In: The Birds of North America, no. 239 (eds Poole A, Gill F). Academy of Natural Sciences, Philadelphia/American Ornithologists' Union, Washington, DC.
    • (1996) The Birds of North America , vol.239
    • Vickery, P.D.1
  • 52
    • 0037076990 scopus 로고    scopus 로고
    • Hybridization and the evolution of coral reef diversity
    • Vollmer SV, Palumbi SR (2002) Hybridization and the evolution of coral reef diversity. Science, 296, 2023-2025.
    • (2002) Science , vol.296 , pp. 2023-2025
    • Vollmer, S.V.1    Palumbi, S.R.2
  • 53
    • 0026364289 scopus 로고
    • Pacific salmon, Oncorhynchus spp. and the definition of 'species' under the endangered species act
    • Waples RS (1991) Pacific salmon, Oncorhynchus spp. and the definition of 'species' under the endangered species act. Marine Fisheries Review, 53, 11-22.
    • (1991) Marine Fisheries Review , vol.53 , pp. 11-22
    • Waples, R.S.1
  • 54
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 55
    • 0026540733 scopus 로고
    • Temporal fluctuations in demographic parameters and the genetic variance among populations
    • Whitlock MC (1992) Temporal fluctuations in demographic parameters and the genetic variance among populations. Evolution, 46, 608-615.
    • (1992) Evolution , vol.46 , pp. 608-615
    • Whitlock, M.C.1
  • 57
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z (1996) Among-site rate variation and its impact on phylogenetic analyses. Trends in Ecology and Evolution, 11, 367-371.
    • (1996) Trends in Ecology and Evolution , vol.11 , pp. 367-371
    • Yang, Z.1
  • 58
    • 0002313863 scopus 로고    scopus 로고
    • Phylogeographic studies of North American birds
    • ed. Mindell DP. Academic Press, San Diego
    • Zink RM (1997) Phylogeographic studies of North American birds. In: Avian Molecular Evolution and Systematics (ed. Mindell DP), pp. 301-324. Academic Press, San Diego.
    • (1997) Avian Molecular Evolution and Systematics , pp. 301-324
    • Zink, R.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.