-
1
-
-
0009305138
-
Redefining the goal of protein secondary structure prediction
-
Rost B, Sander C. Redefining the goal of protein secondary structure prediction. J Mol Biol 1994;270:1-10.
-
(1994)
J Mol Biol
, vol.270
, pp. 1-10
-
-
Rost, B.1
Sander, C.2
-
2
-
-
0033081846
-
A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment
-
Zemla A, Venclovas C, Fidelis K, Rost B. A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins 1999;34:220-223.
-
(1999)
Proteins
, vol.34
, pp. 220-223
-
-
Zemla, A.1
Venclovas, C.2
Fidelis, K.3
Rost, B.4
-
3
-
-
0032605908
-
Structure classification-based assessment of CASP3 predictions for the fold recognition targets
-
Murzin AG. Structure classification-based assessment of CASP3 predictions for the fold recognition targets. Proteins Struct Funct Genet 1999;37:88-103.
-
(1999)
Proteins Struct Funct Genet
, vol.37
, pp. 88-103
-
-
Murzin, A.G.1
-
4
-
-
0032828469
-
Analysis and assessment of ab inition three-dimensional prediction, secondary structure and contacts prediction
-
Orengo CA, Bray JE, Hubbard T, LoConte L, Sillitoe I. Analysis and assessment of ab inition three-dimensional prediction, secondary structure and contacts prediction. Proteins Struct Funct Genet 1999;37:149-170.
-
(1999)
Proteins Struct Funct Genet
, vol.37
, pp. 149-170
-
-
Orengo, C.A.1
Bray, J.E.2
Hubbard, T.3
LoConte, L.4
Sillitoe, I.5
-
5
-
-
0035698589
-
CAFASP2: The second critical assessment of fully automated structure prediction methods
-
Fischer D, Elofsson A, Rychlewski L, Pazos F, Valencia A, Rost B, Ortiz AR, Dunbrack RL. CAFASP2: The second critical assessment of fully automated structure prediction methods. Proteins 2001;45:171-183.
-
(2001)
Proteins
, vol.45
, pp. 171-183
-
-
Fischer, D.1
Elofsson, A.2
Rychlewski, L.3
Pazos, F.4
Valencia, A.5
Rost, B.6
Ortiz, A.R.7
Dunbrack, R.L.8
-
6
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
Kelley LA, MacCallum RM, Sternberg MJE. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol 2000;299:499-520.
-
(2000)
J Mol Biol
, vol.299
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.E.3
-
7
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999;292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
9
-
-
0029804192
-
Identification and application of the concepts important for accurate and reliable protein secondary structure prediction
-
King RD, Sternberg MJE. Identification and application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Sci 1996;5,2298-2310.
-
(1996)
Protein Sci
, vol.5
, pp. 2298-2310
-
-
King, R.D.1
Sternberg, M.J.E.2
-
10
-
-
0033537993
-
GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
-
Jones DT. GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences. J Mol Biol 1999;287:797-815.
-
(1999)
J Mol Biol
, vol.287
, pp. 797-815
-
-
Jones, D.T.1
-
11
-
-
0035109761
-
What are the baselines for protein fold recognition?
-
McGuffin LJ, Bryson K, Jones DT. What are the baselines for protein fold recognition? Bioinformatics 2001;17:63-72.
-
(2001)
Bioinformatics
, vol.17
, pp. 63-72
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
12
-
-
0036139410
-
EVA: Continuous automatic evaluation of protein structure prediction servers
-
Eyrich V, Martf-Renom MA, Przybylski D, Madhusudhan MS, Fiser A, Pazos F, Valencia A, Sali A, Rost B. EVA: continuous automatic evaluation of protein structure prediction servers. Bionformatics 2001;17:1242-1243.
-
(2001)
Bionformatics
, vol.17
, pp. 1242-1243
-
-
Eyrich, V.1
Martf-Renom, M.A.2
Przybylski, D.3
Madhusudhan, M.S.4
Fiser, A.5
Pazos, F.6
Valencia, A.7
Sali, A.8
Rost, B.9
-
13
-
-
0035103763
-
LiveBench-1: Continuous benchmarking of protein structure prediction servers
-
Bujnicki JM, Elofsson A, Fischer D, Rychlewski L. LiveBench-1: Continuous benchmarking of protein structure prediction servers. Protein Sci 2001;10:352-361.
-
(2001)
Protein Sci
, vol.10
, pp. 352-361
-
-
Bujnicki, J.M.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
14
-
-
0033369033
-
Exploiting the past and the future in protein secondary structure prediction
-
Baldi P, Brunak S, Frasconi P, Pollastri G, Soda G. Exploiting the past and the future in protein secondary structure prediction. Bioinformatics 1999;15:937-946.
-
(1999)
Bioinformatics
, vol.15
, pp. 937-946
-
-
Baldi, P.1
Brunak, S.2
Frasconi, P.3
Pollastri, G.4
Soda, G.5
-
15
-
-
0033106244
-
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
-
Cuff JA, Barton GJ. Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. Proteins 1999;34:508-519.
-
(1999)
Proteins
, vol.34
, pp. 508-519
-
-
Cuff, J.A.1
Barton, G.J.2
-
16
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
Przybylski D, Rost B. Alignments grow, secondary structure prediction improves. Proteins 2002;46:197-205.
-
(2002)
Proteins
, vol.46
, pp. 197-205
-
-
Przybylski, D.1
Rost, B.2
-
17
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile based neural networks
-
Rost B. PHD: predicting one-dimensional protein structure by profile based neural networks. Methods Enzymol 1996;266:525-539.
-
(1996)
Methods Enzymol
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
18
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
19
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970;48:443-453.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
21
-
-
0036643498
-
Targeting novel folds for structural genomics
-
McGuffin LJ, Jones DT. Targeting novel folds for structural genomics. Proteins 2002;48:44-52.
-
(2002)
Proteins
, vol.48
, pp. 44-52
-
-
McGuffin, L.J.1
Jones, D.T.2
-
22
-
-
0032948129
-
Enhanced protein fold recognition using secondary structure information from NMR
-
Ayers DJ, Gooley PR, Widmer-Cooper A, Torda AE. Enhanced protein fold recognition using secondary structure information from NMR. Protein Sci 1999;8:1127-1133.
-
(1999)
Protein Sci
, vol.8
, pp. 1127-1133
-
-
Ayers, D.J.1
Gooley, P.R.2
Widmer-Cooper, A.3
Torda, A.E.4
-
23
-
-
0030777303
-
CATH: A hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM. CATH: a hierarchic classification of protein domain structures. Structure 1997;5:1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
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