Advances in rice breeding, genetics and genomics

Molecular Breeding

Volumn 11, Issue 4, 2003, Pages 337-352

  Gowda, Malali ^a   Venu, R C ^b   Roopalakshmi, K ^a   Sreerekha, M V ^c   Kulkarni, R S ^d  

^a OHIO STATE UNIVERSITY   (United States)

^b M S UNIVERSITY OF BARODA   (India)

^c GUJARAT AGRICULTURAL UNIVERSITY   (India)

^d UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; GENOME; MOLECULAR BIOLOGY; PLANTS (BOTANY); POPULATION STATISTICS;

BREEDING METHOD; CROP PRODUCTIVITY; DISEASE RESISTANCE; GENOMICS; GERMPLASMS; INSECT RESISTANCE; PLANT BREEDERS; RESISTANCE GENES; RICE BREEDING; RICE GENOMES;

GENES;

ANIMALIA; BACTERIA (MICROORGANISMS); EMBRYOPHYTA; FUNGI; HEXAPODA; INSECTA; PROTOZOA;

EID: 0037649023     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1023476401577     Document Type: Review

References (141)

1. Abedinia M., Henry R.J., Blakeney A.B. and Lewin L.G. 2000. Accessing genes in the tertiary gene pool of rice by direct introduction of total DNA from Zizania palustris (wild rice). Plant Molecular Biology Reporter 18: 133-138.
2. Abenes M.L.P., Tabien R.E., McCouch S.R., Ikeda R., Ronald P., Khush G.S. et al. 1994. Orientation and integration of the classical and molecular genetic maps of chromosome 11 in rice. Euphytica 76: 81-87.
3. Adessi C., Miege C., Albrieux C. and Rabilloud T. 1997. Two-dimensional electrophoresis of membrane proteins: a current challenge for immobilized pH gradients. Electrophoresis 18: 127-135.
4. Ahn S.N., Bollich C.N. and Tanksley S.D. 1992. RELP tagging of a gene for aroma in rice. Theor. Appl. Genet. 84: 825-828.
5. Ahn S.N., Bollich C.N., McClung A.M. and Tanksley S.D. 1993. RFLP analysis of genomic regions associated with cooked-kernel elongation in rice. Theor. Appl. Genet. 87: 27-32.
6. Agrawal S.K., Keshari A.K., Sinh R.L., Shrestha K.P. and Agrawal V.P.L. 1991. Comparative study of anther culture of Jumli Marshi and Chhomrog - two important cultivars of Nepal. Biotechnology Letters 1: 1-4.
7. Akagi H., Shimada H. and Fujimura T. 1995. High frequency inter-parental recombination between mitochondrial genome of rice cybrids. Current Genetics 29: 58-65.
8. Arabidopsis Genome Initiative (AGI) 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
9. Arumugnathan K. and Earle E.D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 3: 208-218.
10. Ashikari M., Wu J., Yano M., Sasaki T. and Yoshimura A. 1999. Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein. Proc. Natl. Acad. Sci. USA 96: 10284-10289.
11. Bryan G.T., Wu K.-S., Farrall L., Jia Y., Hershey H.P., McAdams S.A. et al. 2000. A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12: 2033-2046.
12. Causse M.A., Fulton T.M., Cho Y.G., Ahn S.N., Chunwongse J., Wu K. et al. 1994. Saturated molecular map of rice genome based on an inter specific backcross population. Genetics 138: 1251-1274.
13. Champoux M.C., Wang G., Sarkarung S., Mackill D.J., Otoole J.C., Huang N. et al. 1995. Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor. Appl. Genet. 90: 969-981.
14. Cheng X., Sardana R., Kaplan H. and Altosaar I. 1998. Agrobacterium-transformed rice plants expressing synthetic cryIA(b) and cryIA(c) genes are highly toxic to striped stem borer and yellow stem borer in rice. Proced. Natl. Acad. Sci. 95: 2767-2772.
15. Cho Y.G., McCouch S.R., Kuiper M., Kang M.R., Pot J., Groenen J.T.M. et al. 1998. Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.). Theor. Appl. Genet. 97: 370-380.
16. Cogoni C. and Macino G. 2000. Post-transcriptional gene silencing across kingdoms. Curr. Opin. Genet. Dev. 10: 638-643.
17. Datta K., Vasquez A., Tu J., Torrizo L., Alam M.F., Oliva N. et al. 1998. Constitutive and tissue-specific differential expression of cryIA(b) gene in transgenic rice plants conferring resistance to rice insect pests. Theoretical and Applied Genetics 97: 31-36.
18. Delseny M., Sales J., Richard C., Sallaud C., Regad F., Lagoda P. et al. 2001. Rice genomics: present and future. Plant Physiol. Biochem. 39: 323-334.
19. Fraser A.G., Kamath R.S., Zipperlen P., Martinez-Campos M., Sohrmann M. and Ahringer J. 2000. Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408: 325-330.
20. Fujii K., Hayano-Saito Y., Shumiya A. and Inoue M. 1995. Genetical mapping based on the RFLP analysis for the panicle blast resistance derived from a rice parental line St. No. 1. Breeding Science 45, (Suppl. 1), (In Japanese): 209.
21. Fukuta Y., Yano M. and Fukui K. 1992. Linkage analysis of the restorer gene (Rf-1) in rice using restriction fragment length polymorphism markers. Japan. J. Breed. 42, (Suppl. 1), (In Japanese): 164-165.
22. Fukuta Y., Yano M. and Kobayashi A. 1994. Genetic analysis of shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety, Nan-jing 11. Breed. Sci. 44: 325-331.
23. Goff S.A., Ricke D., Lan T-H., Presting G. and Wang R. et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100.
24. Gowda M. and Chattoo B.B. 2002. Identification of SSLP and AFLP markers to resistance gene against blast fungal races exist in India. J. Genetics, (Submitted).
25. Harper B.K. and Stewart J.R. 2000. Patterns of green fluorescent protein expression in transgenic plants. Plant Mol. Bio. Rep. 18: 141a-141i.
26. Harushima Y., Yano M., Shomura A., Sato M. and Shimano T. et al. 1998. A high-density rice genetic linkage map with 2275 markers using a single F2 population. Genetics 148: 479-494.
27. Hayano-Saito Y., Saito K., Fujii K., Hashimoto J. and Saito A. 1993. Linkage analysis of the resistance gene to rice stripe disease. Japan. J. Breed. 43, (Suppl. 2) (In Japanese): 85.
28. Hayasaka H., Shimano T., Ebana K., Nagamura Y., Yano M., Sasaki T. et al. 1995. RFLP mapping of a rice blast resistance gene Pi-b. Breeding Science 45, (Suppl. 1) (In Japanese): 92.
29. Hiratsuka J., Shimada H., Whittier S., Ishibashi T. and Sakamoto M. et al. 1989. The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol. Gen. Genet. 217: 185-194.
30. Hittalmani S., Foolad M., Mew T., Rodriguez R. and Huang N. 1994. Identification of blast resistance gene. Pi-2(t) in rice plants by flanking DNA markers. Rice Genet. News L. 11: 144-146.
31. Hittalmani S., Mew T., Kush G.S. and Huang N. 1996. DNA markers-assisted breeding for disease resistance in rice. In: Fragile lives in fragile ecosystem. Proceedings of the International Rice Research Conference: 13-17 Feb (1995) Los Banos, Philippine. Manual: IRRI, pp. 949-961.
32. Huang N., McCouch S., Mew T., Parco A. and Guiderdoni E. 1994. Development of an RFLP map from a double haploid population in rice. Rice Genet. News L. 11: 134-137.
33. Huang N., Courtois B., Khush G.S., Lin H.X., Wang G.L., Wu P. et al. 1996. Association of quantitative trait loci for plant height with major dwarfing genes in rice. Heredity 77: 130-137.
34. Huang N., Angeles E.R., Domingo J., Magpantay G., Singh S., Zhang G. et al. 1997a. Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor. Appl. Genet. 95: 313-320.
35. Huang N., Parco A., Mew T., Magpantay G., McCouch S.R., Guiderdoni E. et al. 1997b. RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population. Mol. Breed. 3: 105-113.
36. Ideta O., Yoshimura A., Matsumoto T., Tsunematsu H., Mikoda T., Satoh H. et al. 1992. Integration of conventional and RFLP linkage maps in rice. III. On the arrangement of some marker genes and RFLP markers. Japan. J. Breed. 42, (Suppl. 2) (In Japanese): 126-127.
37. Ideta O., Yoshimura A., Matsumoto T., Tsunematsu H., Saito H. and Iwata N. 1993a. Integration of conventional and RFLP linkage maps in rice. II. Chromosome 6. 9. 10 and 11. Rice Genet. News L. 10: 87-89.
38. Ideta O., Yoshimura A., Matsumoto T., Tsunematsu H. and Iwata N. 1993b. Integration of conventional and RFLP linkage maps in rice. IV. On chromosomes 6. 9 and 11. Japan. J. Breed. 43, (Suppl. 2) (In Japanese): 100.
39. Ideta O., Yoshimura A., Ashikari M. and Iwata N. 1994. Integration of conventional and RFLP linkage maps in rice. III. Chromosomes 5. 7. 8 and 12. Rice Genet. News L. 11: 116-117.
40. International SNP map working group 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
41. Ishii T., Brar D.S., Multani D.S. and Khush G.S. 1994. Molecular tagging of genes for brown planthopper resistance and earliness introgressed from Oryza australiensis into cultivated rice, O. sativa. Genome 37: 217-221.
42. Iwahashi M., Nakazono M., Kanno A., Sugino K., Ishibashi T. and Hirai A. 1992. Genetic and physical maps and a clone bank of mitochondrial DNA from rice. Theor. Appl. Genet. 84: 275-279.
43. Jefferson R.A. 1987. Assaying chimeric genes in Plants: The GUS gene fusion system. Plant Mol. Bio. Reporter 5: 387-405.
44. Jena K.K., Khush G.S. and Kochert G. 1992. RFLP analysis of introgression lines of O. sativa L. having insect resistance gene(s) introgressed from O. officinalis Wall ex Watt. Theor. Appl. Genet. 84: 608-616.
45. Jeon J.-S., Lee S., Jung K.-H., Jun S.-H. and Jeong D.-H. et al. 2000. T-DNA insertional mutagenesis for functional genomics in rice. Plant J. 22: 561-570.
46. Kaji K. and Ogawa T. 1994. RFLP mapping of a blast resistance gene. Pi-k in rice. Japan. J. Breed. 44, (Suppl. 2) (In Japanese): 181.
47. Kaji R. and Ogawa T. 1995. Identification of the located chromosome of the resistance gene. Xa-7 to bacterial leaf blight in rice. Breeding Science 45, (Suppl. 1) (In Japanese): 79.
48. n(t) conferring glume width in rice. Breeding Science 45, (Suppl. 1) (In Japanese): 77.
49. Karp P.D. 2001. Pathway databases: a case study in computational symbolic theories. Science 293: 2040-2044.
50. Khush G.S., Singh R.J., Sur S.C. and Librojo A.L. 1984. Primary trisomics of rice: origin, morphology, cytology and use in linkage mapping. Genetics 107: 141-163.
51. Khush G.S. 1987. Rice breeding-present and future. J. Genet. 66: 195-216.
52. Khush G.S. and Kinoshita T. 1991. Rice karyotype, marker genes and linkage groups. In: Khush and Toenniessen (eds), Rice Biotechnology. IRRI, Manila, Philippines, pp. 83-108.
53. Khush G.S. 1997. Origin, dispersal, cultivation and variation of rice. Plant Mol. Biol. 35: 25-34.
54. Kilian A., Kudrna D.A., Kleinhofs A., Yano M., Kurata N., Steffenson B. et al. 1995. Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region. Nucleic Acids Res. 23: 2729-2733.
55. Kinoshita T. 1995. Report of the coordinating committee of rice genetics cooperative. Rice Genetics News L. 12: 24-153.
56. Kishimoto N., Shimosaka E., Matsuura S. and Saito A. 1992. A current RFLP linkage map of rice: Alignment of the molecular map with the classical map. Rice Genet. News L. 9: 118-124.
57. 8 gene controlling the super giant embryo character in rice (Oryza sativa L.). Theor. Appl. Genet. 93: 257-261.
58. Kurata N., Nagamura Y., Yamamoto K., Harushima Y., Sue N. and Wu J. et al. 1994. A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genetics 8: 365-372.
59. Kurata N., Umehara Y., Tanoue H. and Sasaki T. 1997. Physical mapping of the rice genome with YAC clones. Plant Mol. Biol. 35: 101-113.
60. Li Z.K., Pinson S.R.M., Stansel J.W. and Park W.D. 1995a. Identification of quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.). Theor. Appl. Genet. 91: 374-381.
61. Li Z.K., Pinson S.R.M., Marchetti M.A., Stansel J.W. and Park W.D. 1995b. Characterization of quantitative trait loci (QTLs) in cultivated rice contributing to field resistance to sheath blight (Rhizoctonia solani). Theor. Appl. Genet. 91: 382-388.
62. Liang C.Z., Gu M.H., Pan X.B., Liang G.H. and Zhu L.H. 1994. RFLP tagging of a new semidwarfing gene in rice. Theor. Appl. Genet. 88: 898-900.
63. Lilley J.M., Ludlow M.M., McCouch S.R. and O'Toole J.C. 1996. Locating QTL for osmotic adjustment and dehydration tolerance in rice. J. Exp. Bot. 47: 1427-1436.
64. Lin W., Anuratha C.S., Datta K., Potrykus I., Muthukrishnan S. and Datta S.K. 1995. Genetic engineering of rice for resistance to sheath blight. Bio/Technology 13: 686-691.
65. Lin H.X., Qian H.R., Zhuang J.Y., Lu J., Min S.K., Xiong Z.M. et al. 1996. RFLP mapping of QTLs for yield and related characters in rice (Oryza sativa L.). Theor. Appl. Genet. 92: 920-927.
66. Lin H.X., Yamamoto T., Sasaki T. and Yano M. 2000. Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines. Theor. Appl. Genet. 101: 1021-1028.
67. Lin H., Ashikari M., Yamanouchi U., Sasaki T. and Yano M. 2002. identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice. Breeding Science 52: 35-41.
68. Liu A., Zhang Q. and Li H. 1992. Location of a gene for wide-compatibility in the RFLP linkage map. Rice Genet. News L. 9: 134-136.
69. Mackill D.J., Salam M.A., Wang Z.Y. and Tanksley S.D. 1993. A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice. Theor. Appl. Genet. 85: 536-540.
70. McCouch S.R., Kochert G., Yu Z.H., Wang Z.Y., Khush G.S., Coffman W.R. et al. 1988. Molecular mapping of rice chromosomes. Theor. Appl. Genet. 76: 815-829.
71. McCouch S.R., Abenes M.L.P., Angeles E.R., Khush G.S. and Tanksley S.D. 1991a. Molecular tagging of a recessive gene, xa-5, for resistance to bacterical blight of rice. Rice Genet. News L. 8: 143-145.
72. McCouch S.R., Khush G.S. and Tanksley S.D. 1991b. Tagging genes for disease and insect resistance via linkage to RFLP markers. In: Rice Genetics II. IRRI, Manila, Philippines, pp. 443-449.
73. McCouch S.R., Nelson R.J., Tohme J. and Zeigler R.S. et al. 1994. Mapping of blast genes in rice. In: Zeigler R.S. (ed.), Rice Blast Disease. CAB International, Wallingford, UK, pp. 167-168.
74. Mew T.V., Parco A.S., Hittalmani S., Inukai T., Nelson R., Zeigler R.S. et al. 1994. Fine-mapping of major genes for blast resistance in rice. Rice Genet. News L. 11: 126-128.
75. Miyamoto M., Saito M., Ando I., Kamada O., Akatsuka T. and Kawasaki S. 1993. High resolution mapping of rice blast resistance gene Pi-b. Japan. J. Breed. 43, (Suppl. 2) (In Japanese): 220.
76. Miyamoto M., Rybka K., Tanaka Y., Kataoka M., Ando L. and Kawasaki S. 1994. Physical mapping of the rice blast resistance genes by using restriction enzymes. Breeding Science 44, (Suppl. 2) (In Japanese): 191.
77. Mohan M., Nair S., Bentur J.S., Rao U.P. and Bennett J. 1994. RFLP and RAPD mapping of the rice Gm-2 gene that confers resistance to biotype I of gallmidge (Orseolia Oryzae). Theor. Appl. Genet. 87: 782-788.
78. Morishima H.O. 1998. Genetic difference between wild and cultivated rice. Agricultural Archaeology 49: 30-35.
79. Nandi S., Subudhi P.K., Senadhira D., Manigbas N.L., Sen-Mandi S. and Huang N. 1997. Mapping QTLs with AFLP and selective genotyping for submergence tolerance in rice. Mol. Gen. Genet. 255: 1-8.
80. Naqvi N.I. and Chattoo B.B. 1996. Development of sequence characterized amplification region (SCAR) based indirect selection method for a dominant blast resistance gene in rice. Genome 39: 26-30.
81. Ogi Y., Kato H., Maruyama K., Saito A. and Kikuchi F. 1993. Identification of RFLP markers closely linked to the semidwarfing gene at the sd-1 locus in rice. Japan. J. Breed. 43: 141-146.
82. Osterlund M.T. and Paterson A.H. 2002. Applied plant genomics: the secret is integration. Cur. Opinion in Plant Bio. 5: 141-145.
83. Paterson A.H., Tanksley S.D. and Sorrells M.S. 1991. DNA markers in plant improvement. Adv. Agron. 46: 39-89.
84. Price A.H. and Tomos A.D. 1997. Genetic dissection of root growth in rice (Oryza sativa L.) II: Mapping quantitative trait loci using molecular markers. Theor. Appl. Genet. 95: 143-152.
85. Raamsdonk L.M., Teusink B., Broadhurst D., Zhang N. and Hayes A. et al. 2001. A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. Nature Biotechnology 19: 45-50.
86. Ray J.D., Yu L., McCouch S.R., Champoux M.C., Wang G.L. and Nguyen H.T. 1996. Mapping quantitative trait loci associated with root penetration ability in rice. Theor. Appl. Genet. 92: 627-636.
87. Redona E.D. and Mackill D.J. 1996. QTL analysis of rice seedling vigor in japonica and indica genetic backgrounds. Int. Rice Res. Notes 21: 16-17.
88. Ronald P.C., Albano B., Tabien R., Abenes L., Wu K., McCouch S.R. et al. 1992. Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa-21. Mol. Gen. Genet. 236: 113-120.
89. Rybka K., Miyamoto M., Kataoka M., Ando I. and Kawasaki S. 1994. Improved high-resolution mapping of rice-blast resistance genes. Breeding Science 44, (Suppl. 2) (In Japanese): 190.
90. 2 and Pi-ta and a consideration of their origin. Mol Plant-Microb Interation 10: 517-524.
91. Saha S., Sparks A.B., Rago C., Akmaev V., Wang C.J., Vogelstein B. et al. 2002. Using the transcriptome to annotate the genome. Nature Biotechnology 20: 508-512.
92. Saito A., Yano M., Kishimoto N., Nakagahra M. and Yoshimura A. et al. 1991. Linkage map of restriction fragment length polymorphism loci in rice. Japan. J. Breed. 41: 665-670.
93. Saito K., Miura K., Nagano K., Hayano-Saito Y., Saito A., Araki H. et al. 1995. Chromosomal location of quantitative trait loci for cool tolerance ant the booting stage in rice variety 'Norin-PL8'. Breed. Sci. 45: 337-340.
94. Schena M., Shalon D., Davis R.W. and Brown P.O. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470.
95. Sebastian L.S., Ikeda R., Huang N., Imbe T., Coffman W.R., Yano M. et al. 1996. Genetic mapping of resistance to rice tungro spherical virus (RTSV) and green leafhopper (GLH) in ARC11554. Rice Genetics, III. IRRI, Manila, Philippines, pp. 560-564.
96. Shevchenko A., Wilm M., Vorm O. and Mann M. 1996. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 68: 850-858.
97. Shimamoto K., Terada R.T., Izawa T. and Fujimoto H. 1989. Fertile transgenic rice plants regenerated from transformed protoplasts. Nature 238: 274-276.
98. Smith H.A., Swaney S.L., Parks T.D., Wernsman E.A. and Dougherty W.G. 1994. Transgenic plant virus resistance mediated by untranslatable sense RNAs: expression, regulation, and fate of nonessential RNAs. Plant Cell 6: 1441-1453.
99. Song W.Y., Wang G.L., Chen L., Zhai W., H.S., Holsten T. et al. 1995. A receptor kinase like protein encoded by the rice disease resistance gene Xa-21. Science 270: 1804-1806.
100. Takahashi Y., Shomura A., Sasaki T. and Yano M. 2001. Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the a subunit of protein kinase CK2. Proc. Natl. Acad. Sci. USA 98: 7922-7927.
101. Tamura K., Yano M., Sasaki T., Nomura K., Namai H. and Kikuchi F. 1995. Linkage analysis using RFLP for a photoperiod-sensitive gene Se-I locus with neighboring loci in rice. Breeding Science 45, (Suppl. 1) (In Japanese): 82.
102. Tanksley S.D., Fulton T.M. and McCouch S.R. 1993. Linkage map of rice (Oryza sativa) (2N = 24). In: O'Brien S.J. (ed.), Genetic Maps, Locus Maps of Complex Genomes. Book 6. Plants. Cold Spring Harbour Lab Press, pp. 6.61-6.79.
103. Temnykh S., Park W.D., Ayres N.M., Cartinhour S., Hauck N., Lipovich L. et al. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100: 697-712.
104. Teraishi M., Komori T., Okumoto Y., Nakazaki T., Yamagata H. and Tanisaka T. 1994. Studies on the utilization of a mutator induced in rice. 8. RFLP mapping of a mutable slender-glume. Breeding Science 44, (Suppl. 1) (In Japanese): 231.
105. Tu J., Ona I., Zhang Q., Mew T.W., Khush G.S. and Datta S.K. 1998. Transgenic rice variety IR 72 with Xa21 Is resistant to bacterial blight. Theor. and Appl. Genet. 97: 31-36.
106. Uetz P., Giot L., Cagney G., Mansfield T.A., Judson R.S. and Knight J.R. et al. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623-627.
107. Umehara Y., Inagaki A. and Tanoue H. et al. 1995. Construction and characterization of a rice YAC library for physical mapping. Molecular Breeding 1: 79-89.
108. Van Leeuwen W., Hagendoorn M.J.M., Ruttink T., Van Poecke R., Van Der Plas L.H.W. and Van Der Krol A.R. 2000. The use of the luciferase reporter system for in planta gene expression studies. Plant Mol. Bio. Reporter 18: 143.
109. Velculescu V.E., Zhang L., Vogelstein B. and Kinzler K.W. 1995. Serial analysis of gene expression. Science 270: 484-487.
110. Wang G.L., Mackill D.J., Bonman J.M., McCouch S.R., Champoux M.C. and Nelson R.J. 1994. RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136: 1421-1434.
111. Wang G.L., Holsten T.E., Song W.Y., Wang H.P. and Ronald P.C. 1995. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 7: 525-533.
112. Wang Z.X., Yano M., Yamanouchi U., Iwamoto M., Monna L., Hayasaka H. et al. 1999. The Pi-b gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeats class of plant disease resistance gene. Plant J. 19: 55-64.
113. 2 fixation in the rhizosphere by irrigated rice plants. Theor. Appl. Genet. 91: 1177-1183.
114. Wu R. 1999. Report of the committee on genetic engineering functional genomics of plants. Rice Genetics News L. 16: 10-14.
115. Xiao J.H., Li J., Yuan L. and Tanksley S.D. 1995. Dominance is the major genetic basis of heterosis in rice as revealed by QTL analysis using molecular markers. Genetics 140: 745-754.
116. Xiao J.H., Li J.M., Yuan L.P. and Tanksley S.R. 1996. Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a sub-specific rice cross. Theor. Appl. Genet. 92: 230-244.
117. 2 population of a cross between O. sativa - O. rufipogon using Cornell and RGP markers. Rice Genet. News L. 14: 110-116.
118. Xu K. and Mackil D.J. 1996. A major locus for submergence tolerance mapped on rice chromosome 9. Mol. Breed. 2: 219-224.
119. Yadav R., Courtois B., Huang N. and McLaren G. 1997. Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice. Theor. Appl. Genet. 94: 619-632.
120. Yamamoto T., Kuboki Y., Lin S.Y., Sasaki T. and Yano M. 1998. Fine mapping of quantitative trait loci Hd-1, Hd-2, and Hd-3, controlling heading date of rice, as single Mendelian factors. Theor. Appl. Genet. 97: 37-44.
121. Yamamoto T., Lin H.X., Sasaki T. and Yano M. 2000. Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny. Genetics 154: 885-891.
122. Yamanouchi U., Yano M., Hongxuian L., Ashikari M. and Yamada K. 2002. A rice leaf gene, Spl7, encodes a heat stress transcription factor protein. Proc. Natl. Acad. Sci. USA 99: 7530-7535.
123. Yang D., Parco A., Nandi S., Subudhi P.K., Zhu Y., Wang G. et al. 1997. Construction of a bacterial artificial chromosome (BAC) library and identification of overlapping BAC clones with chromosome 4 specific RFLP markers in rice. Theor. Appl. Genet. 95: 1147-1154.
124. Yanagihara S., McCouch S.R., Ishikawa K., Ogi Y., Maruyama K. and Ikehashi H. 1995. Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O. sativa L.). Theor. Appl. Genet. 90: 182-188.
125. Yano M., Simosaka E., Saito A. and Nakagahra M. 1991. Linkage analysis on gene for scent in indica rice variety - Surjamkhi using a restriction fragment length polymorphism markers. Japan. J. Breed. 41, (Suppl. 1) (In Japanese): 338-339.
126. Yano M., Harushima Y., Nagamura Y., Kurata N., Minohe Y. and Sasaki T. 1997. Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map. Theor. App. Genet. 95: 1025-1032.
127. Yano M., Katayose Y., Ashikari M., Yamanouchi U., Monna L., Fuse T. et al. 2000. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12: 2473-2484.
128. Ye X., Al-Babili S., Klöti A., Zhang J., Lucca P., Beyer P. et al. 2000. Engineering the provitamin A (β-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. Science 287: 303-305.
129. Yoshimura A., Ideta O., Matsumoto T., Tsunematsu T. and Iwata N. 1992a. Integration of conventional and RFLP linkage maps in rice. 1. On chromosomes 1, 2, 3 and 4. Japan. J. Breed. 42, (Suppl. 1) (In Japanese): 168-169.
130. Yoshimura A., Ideta O., Takebayashi S., Matsumoto T., Yoshimura S., Ogawa T. et al. 1992b. Intergration of RFLP and conventional maps in rice. II. The location of gl-1 and xa-5. Japan. J. Breed. 42, (Suppl. 2) (In Japanese): 124-125.
131. Yoshimura S., Yoshimura A., Nelson R.J., McCouch S.R., Mew T.W. and Iwata N. 1993. Mapping and combining of bacterial blight resistance genes in rice using molecular markers. Japan. J. Breed. 43, (Suppl. 1) (In Japanese): 161.
132. Yoshimura S., Kurata N., Sasaki T. and Yoshimura A. 1994. Genetic analysis of bacterial blight resistance genes in rice by using molecular markers. Recent Advances in Plant Breeding 36: 33-36.
133. Yoshimura A., Lei J.X., Matsumoto T., Tsunematsu H., Yoshimura S., Iwata N. et al. 1996. Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA marker. Rice Genetics, III. IRRI, Manila, Philippines.
134. Yoshimura S., Yamanouchi U., Katayose Y., Toki S., Wang Z.X., Kono I. et al. 1998. Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc. Natl. Acad. Sci. USA 95: 1663-1668.
135. Yu Z.H., Mackill D.J., Bonman J.M. and Tanksley S.D. 1991. Tagging genes for blast resistance in rice via linkage to RFLP markers. Theor. Appl. Genet. 81: 471-476.
136. Yu Z.H., Kinoshita T., Sato S. and Tanksley S.D. 1992. Morphological and RFLP markers are associated in rice. Rice Genet. News L. 9: 116-118.
137. Yu J., Hu S., Wang J., Wong G.-K. and Li S. et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92.
138. Zhang A.F., Shen F.B.S., Dai X.K., Mei M.H., Saghai Marrof M.A. and Li Z.B. 1993. An RFLP-based genetic analysis of photoperiod sensitive male sterility in rice. Rice Genet. News L. 10: 94-97.
139. Zhang G., Lu Y. and Huang N. 1994. Molecular analysis of introgressed chromosomal segments in a set of near-isogenic lines of rice for fertility-restoring genes. Rice Genet. News L. 11: 147-149.
140. Zhang G., Bharaj T.S., Lu Y., Virmani S.S. and Huang N. 1997. Mapping of the Rf-3 nuclear fertility-restoring gene for WA cytoplasmic male sterility in rice using RAPD and RFLP markers. Theor. Appl. Genet. 94: 27-33.
141. Zhu L., Chen Y., Ling Z., Xu Y. and Xu J. 1993. Identification of molecular markers linked to a blast resistance gene in rice. In: You C.B. and Chen Z.L. (eds), Agric. Biotech. China. Sci. and Tech. Press, China, pp. 213.