Cu,Zn superoxide dismutase in Rhodotorula and Udeniomyces spp. isolated from sea water: Cloning, and sequencing the encoding region

Yeast

Volumn 20, Issue 6, 2003, Pages 479-492

  Hernández Saavedra, Norma Y ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS DEL NOROESTE   (Mexico)

Author keywords

Antioxidant defences; Marine yeast; Pigmented yeasts; Rhodotorula; SODC; Superoxide dismutase; Udeniomyces

Indexed keywords

AMINO ACID; CAROTENOPROTEIN; COPPER ION; COPPER ZINC SUPEROXIDE DISMUTASE; GENOMIC DNA; MANGANESE SUPEROXIDE DISMUTASE; NUCLEOTIDE; PEPTIDE; PROTEIN; SEA WATER;

AMINO ACID SEQUENCE; CELL FREE SYSTEM; CONTROLLED STUDY; CORRELATION ANALYSIS; FUNGAL STRAIN; FUNGUS ISOLATION; GENE AMPLIFICATION; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN FUNCTION; REVIEW; RHODOTORULA; RHODOTORULA GRAMINIS; RHODOTORULA MUCILAGINOSA; STOP CODON; UDENIOMYCES; YEAST;

AMINO ACID SEQUENCE; BASE SEQUENCE; BASIDIOMYCOTA; CLONING, MOLECULAR; CONSENSUS SEQUENCE; COPPER SULFATE; KINETICS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLASMIDS; POLYMERASE CHAIN REACTION; RECOMBINANT PROTEINS; RHODOTORULA; RNA, MESSENGER; SEAWATER; SUPEROXIDE DISMUTASE; WATER MICROBIOLOGY;

EUKARYOTA; INSERTION SEQUENCES; RHODOTORULA GRAMINIS; RHODOTORULA MUCILAGINOSA; UDENIOMYCES; UDENIOMYCES PUNICEUS;

EID: 0037648776     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/yea.982     Document Type: Review

References (53)

1. Arun S, Subramania P. 1998. Antioxidant enzymes activity in subcellular fraction of freshwater prawns Macrobrachium malcolmsonii and M. lamarrei lamarrei. Appl Biochem Biotechnol 75: 187-192.
2. Beauchamp C, Fridovich I. 1971. Superoxide dismutase: improved assay applicable to acrylamide gels. Anal Biochem 44: 276-287.
3. Bermingham-McDonogh M, Gralla EB, Valentine JS. 1988. The copper zinc superoxide dismutase gene from Saccharomyces cerevisiae: cloning, sequencing, and biological activity. Proc Natl Acad Sci USA 85: 4789-4793.
4. Birnboim HC, Doly J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7: 1513-1515.
5. Boekhout T, Nakase T. 1999. Bullera Derx. In The Yeast: A Taxonomic Study, Kurtzman CP, Fell JW (eds). Elsevier Science: Amsterdam; 731-741.
6. Brouwer M, Brouwer TH, Grater W, Enghild JJ, Thogersen IB. 1997. The paradigm that all oxygen-respiring eukaryotes have cytosolic CuZn-superoxide dismutase and that Mn-superoxide dismutase is localized to the mitochondria does not apply to a large group of marine arthropods. Biochemistry 36: 13 381-13 388.
7. Brouwer M, Brouwer TH. 1998. Biochemical defense mechanism against copper-induced oxidative damage in the blue crab, Callinectes sapidus. Arch Biochem Biophys 351: 257-264.
8. Carri MT, Galiazzo F, Ciriolo RM, Rotilio G. 1991. Evidence of co-regulation of Cu,Zn superoxide dismutase and metallothionein gene expression in yeast through transcriptional control by copper via ACE 1 factor. FEBS Lett. 2278: 263-266.
9. Casareno LRB, Waggoner D, Gitlin JD. 1998. The copper chaperone CCS directly interacts with copper/zinc superoxide dismutase. J Biol Chem 273: 23 625-23 628.
10. Chary P, Hallewell RA, Natvig DO. 1990. Structure, exon pattern, and chromosome mapping of the gene for cytosolic copper-zinc superoxide dismutase (sod-1) from Neurospora crassa. J Biol Chem 265: 18 961-18 967.
11. Chaturvedi S, Hamilton AJ, Hobby P, et al. 2001. Molecular cloning, phylogenetic analysis and three dimensional modeling of Cu,Zn superoxide dismutase (Cnsod1) from three varieties of Cryptococcus neoformans. Gene 268: 41-51.
12. Ciriolo MR, Civitareale P, Carri MT, et al. 1994. Purification and characterization of Ag,Zn-superoxide dismutase from Saccharomyces cerevisiae exposed to silver. J Biol Chem 296: 25 783-25 787.
13. Culotta VC, Joh HD, Lin SJ, Slekar KH, Strain J. 1995. A physiological role for Saccharomyces cerevisiae copper/zinc superoxide dismutase in copper buffering. J Biol Chem 270: 29 991-29 997.
14. Culotta VC, Klomp LWJ, Strain J, et al. 2000. The copper chaperone for superoxide dismutase. J Biol Chem 272: 23 469-23 472.
15. Davis BJ. 1964. Disc electrophoresis. II. Method and application to human serum proteins. Ann NY Acad Sci 121: 404-427.
16. Fell JW, Statzell-Tallman A. 1999. Rhodotorula F.C. Harrison. In The Yeast: A Taxonomic Study, Kurtzman CP, Fell JW (eds). Elsevier Science: Amsterdam; 800-827.
17. Fridovich I. 1989. Superoxide dismutases: an adaptation to a paramagnetic gas. J Biol Chem 264: 7761-7764.
18. Galiazzo F, Cirolo MR, Carri MT, et al. 1991. Activation and induction by copper of Cu/Zn superoxide dismutase in Saccharomyces cerevisiae. Eur J Biochem 196: 545-549.
19. Gralla EB, Thiele DJ, Silar Ph, Valentine JS. 1991. ACE1, a copper-dependent transcription factor, activates expression of the yeast copper,zinc superoxide dismutase gene. Proc Natl Acad Sci USA 88: 8558-8562.
20. Greco MA, Hrab DI, Magner W, Kosman DJ. 1990. Cu,Zn superoxide dismutase and copper deprivation and toxicity in Saccharomyces cerevisiae. J Bacteriol 172: 317-325.
21. Halliwell B, Gutteridge JMC. 1999. Free Radicals in Medicine and Biology. Clarendon: Oxford.
22. Hernández-Saavedra NY, Hernández D, Ochoa JL. 1992. Distribution of Sporobolomyces (Kluyver et van Niel) genus in the western coast of BCS, México. System Appl Microbiol 15: 319-322.
23. Hernández-Saavedra NY, Egly JM, Ochoa JL. 1998. Cloning and sequencing a cDNA encoding a copper-zinc superoxide dismutase enzyme from the marine yeast Debaryomyces hansenii. Yeast 14: 573-581.
24. Hernández-Saavedra NY, Ochoa JL. 1999. Copper-zinc superoxide dismutase from the marine yeast Debaryomyces hansenii. Yeast 15: 657-668.
25. Hernández-Saavedra NY, Romero-Geraldo R. 2001. Cloning and sequencing the genomic encoding region of copper-zinc superoxide dismutase enzyme from several marine strains of the genus Debaryomyces (Lodder and Kreger van Rij). Yeast 18: 227-238.
26. Hernández-Saavedra NY. 1990. Aislamiento y caracterización de levaduras marinas en la costa occidental de Baja California sur, México. Bachelor Thesis, Universidad Nacional Autónoma de México (UNAM-ENEPI), México City.
27. Hjalmarsson K, Marklund SL, Engstroem A, Edlund T. 1987. Isolation and sequence of complementary DNA encoding human extracellular superoxide dismutase. Proc Natl Acad Sci USA 84: 6340-6344.
28. Holmblad T, Soderhall K. 1999. Cell adhesion molecules and antioxidant enzymes in a crustacean, possible role in immunity. Aquaculture 172: 111-123.
29. Johansson MW, Holmblad T, Thornquist PO, et al. 1999. A cell surface superoxide dismutase is a binding protein for peroxinectin, a cell-adhesive peroxidase in crayfish. J Cell Sci 112: 917-925.
30. Kendrew J, Lawrence E (eds). 1994. The Encyclopedia of Molecular Biology. Blackwell Science: Oxford; 880-882.
31. Kujumdzieva-Savova AV, Savov AV, Georgieva EI. 1991. Role of superoxide dismutase in the oxidation of N-alkanes. Free Rad Biol Med 11: 263-268.
32. Kurtzman CP, Fell JW (eds). 1999. The Yeast: A Taxonomic Study, 4th edn. Elsevier Science: Amsterdam.
33. Liddell S, Knox DP. 1998. Extracellular and cytoplasmic Cu/Zn superoxide dismutases from Haemonchus contortus. Parasitology 116: 383-394.
34. Lin CT, Lun MT, Sheu DC, Duan KJ. 1994. Cloning and characterization of a copper/zinc superoxide dismutase gene from Aspergillus japonicus. Taiwana 39: 73-79.
35. Lippard SJ. 1999. Free copper ions in the cell? Science 284: 748-749.
36. Lodder J, Kreger van Rij NJW (eds). 1983. The Yeast: A Taxonomic Study, 3rd edn. Elsevier Science: Amsterdam.
37. Lowry OH, Rosenbrough NJ, Farr AL, Randall RJ. 1976. Protein measurement with the Folin phenol reagent. J Biol Chem 193: 265-275.
38. Lyons TJ. 1998. Studies of the metal binding properties and reactivity of yeast copper,zinc superoxide dismutase, the effect of Lys7p on the properties, and the implications for amyotrophic lateral sclerosis. PhD Thesis, University of California, Los Angeles. Volume 5909B of Dissertations Abstracts International; 4803.
39. Maniatis T, Sambrook J, Fritsch EF. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press: New York.
40. Marklund SL. 1984. Properties of extracellular superoxide dismutase from human lung. Biochem J 222: 649-655.
41. Matsumoto T, Terauchi K, Isobe T, Matsuoka K, Yamakura F. 1991. Iron and manganese containing superoxide dismutase from methylomonas: identity of protein moiety and amino acid sequence. Biochemistry 30: 3210-3216.
42. McCord JM, Fridovich I. 1969. Superoxide dismutase. An enzymatic function for erythrocuprein (hemocuprein). J Biol Chem 244: 6040-6055.
43. Moore MM, Breedveld MW, Autor AP. 1989. The role of carotenoids in preventing oxidative damage in the pigmented yeast Rhodotorula mucilaginosa. Arch Biochem Biophys 270: 419-431.
44. Mourete G, Diaz Salvago E. 1999. Characterization of antioxidant systems, oxidation status and lipids in brain of wild-caught size-class distributed Aristeus antennatus (Risso, 1816), Crustacea, Decapoda. Comp Biochem Physiol 124: 405-416.
45. Paganelli M, Romandi P, Bertoloni G, et al. 1988. Induction of superoxide dismutase by methanol and structural modification of Candida albicans. In Yeast as a Main Protagonist of Biotechnology, Martini A, Martini V (eds). Proceedings of the 7th International Symposium on Yeast, Perugia, Italy. Wiley: Chichester; 431-435.
46. Philippsen P, Stotz A, Scherf C. 1991. DNA of Saccharomyces cerevisiae. In Guide to Yeast Genetics and Molecular Biology, Guthrie C, Fink GR (eds). Methods in Enzymology, vol 194. Academic Press: New York; 169-182.
47. Ramírez-Orozco M, Hernández-Saavedra NY, Ascencio-Valle F, Acosta-González B, Ochoa JL. 1998. Cell yield and superoxide dismutase activity of the marine yeast Debaryomyces hansenii under different culture conditions. J Mar Biotechnol 16: 225-229.
48. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Ecol 4: 406-425.
49. Simurda MC, Rekosh DM, LoVerde PT. 1988. Schistosoma mansoni: identification and analysis of an mRNA and a gene encoding superoxide dismutase (Cu/Zn). Exp Parasitol 67: 73-84.
50. Tang L, Henkle KJ, Selkirk ME. 1994. Extracellular and cytoplasmic CuZn superoxide dismutases from Brugia lymphatic filarial nematode parasites. Infect Immunol 62: 961 -967.
51. Tibell L, Hjalmarsson K, Edlund T, et al. 1987. Expression of human extracellular superoxide dismutase in Chinese hamster ovary cells and characterization of the product. Proc Natl Acad Sci USA 84: 6634-6638.
52. Warner HR. 1994. Superoxide dismutase, aging and degenerative disease. Free Rad Biol Med 17: 249-258.
53. Youn HD, Kim EJ, Roe JH, Hah YC, Kang SO. 1996. A novel nickel-containing superoxide dismutase from Streptomyces spp. Biochem J 318: 889-896.