메뉴 건너뛰기




Volumn 25, Issue 2, 2003, Pages 182-191

The extraction of fungal DNA from multiple large soil samples

Author keywords

Calcium chloride; Fluorometry; Soilborne plant pathogens; Zirconium oxide beads

Indexed keywords

CYLINDROCARPON; CYLINDROCARPON DESTRUCTANS; FUNGI; NEONECTRIA RADICICOLA;

EID: 0037631058     PISSN: 07060661     EISSN: 17152992     Source Type: Journal    
DOI: 10.1080/07060660309507067     Document Type: Article
Times cited : (14)

References (23)
  • 1
    • 0034827343 scopus 로고    scopus 로고
    • Effects of humic substances on fluorometric DNA quantification and DNA hybridization
    • Bachoon, D. S., Otero, E., and Hodson, R. E., 2001. Effects of humic substances on fluorometric DNA quantification and DNA hybridization. J. Microbiol. Methods, 47:73–82.
    • (2001) J. Microbiol. Methods , vol.47 , pp. 73-82
    • Bachoon, D.S.1    Otero, E.2    Hodson, R.E.3
  • 2
    • 0031959263 scopus 로고    scopus 로고
    • Detection and enumeration of a genetically modified fungus in soil environments by quantitative competitive polymerase chain reaction
    • Baek, J.-M., and Kenerley, C. M., 1998. Detection and enumeration of a genetically modified fungus in soil environments by quantitative competitive polymerase chain reaction. FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Ecol, 25:419–428.
    • (1998) FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Ecol , vol.25 , pp. 419-428
    • Baek, J.-M.1    Kenerley, C.M.2
  • 3
    • 0027829769 scopus 로고
    • Residue placement and fungicide effects on fungal communities in conventional and no-tillage soils
    • Beare, M. H., Pohlad, B. R., Wright, D. H., and Coleman, D. C., 1993. Residue placement and fungicide effects on fungal communities in conventional and no-tillage soils. Soil Sci. Soc. Am. J., 57:392–399.
    • (1993) Soil Sci. Soc. Am. J , vol.57 , pp. 392-399
    • Beare, M.H.1    Pohlad, B.R.2    Wright, D.H.3    Coleman, D.C.4
  • 4
    • 0035065898 scopus 로고    scopus 로고
    • A strategy for optimizing quality and quantity of DNA extracted from soil
    • Bürgmann, H., Pesaro, M., Widmer, F., and Zeyer, J., 2001. A strategy for optimizing quality and quantity of DNA extracted from soil. J. Microbiol. Methods, 45:7–20.
    • (2001) J. Microbiol. Methods , vol.45 , pp. 7-20
    • Bürgmann, H.1    Pesaro, M.2    Widmer, F.3    Zeyer, J.4
  • 5
    • 0032871994 scopus 로고    scopus 로고
    • Rapid detection of ar buscular mycorrhizae in roots and soil of an intensively managed turfgrass system by PCR amplification of small subunit rDNA
    • Chelius, M. K., and Triplett, E. W., 1999. Rapid detection of ar buscular mycorrhizae in roots and soil of an intensively managed turfgrass system by PCR amplification of small subunit rDNA. Mycorrhiza, 9:61–64.
    • (1999) Mycorrhiza , vol.9 , pp. 61-64
    • Chelius, M.K.1    Triplett, E.W.2
  • 6
    • 0030469387 scopus 로고    scopus 로고
    • A method for direct soil extraction and PCR amplification of endo myco rrhizal fungal DNA
    • Claassen, V. P., Zasoski, R. J., and Tyler, B. M., 1996. A method for direct soil extraction and PCR amplification of endo myco rrhizal fungal DNA. Mycorrhiza, 6:447–450.
    • (1996) Mycorrhiza , vol.6 , pp. 447-450
    • Claassen, V.P.1    Zasoski, R.J.2    Tyler, B.M.3
  • 7
    • 0032145986 scopus 로고    scopus 로고
    • Simple and rapid method for direct extraction of microbial DNA from soil for PCR
    • Cullen, D. W., and Hirsch, P. R., 1998. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biol. Biochem, 30:983–993.
    • (1998) Soil Biol. Biochem , vol.30 , pp. 983-993
    • Cullen, D.W.1    Hirsch, P.R.2
  • 8
    • 0033942037 scopus 로고    scopus 로고
    • Improved DNA extraction method for Verticillium detection and quantification in large-scale studies using PCR-based techniques
    • Heinz, R. A., and Platt, H. W. B., 2000. Improved DNA extraction method for Verticillium detection and quantification in large-scale studies using PCR-based techniques. Can. J. Plant Pathol, 22:117–121.
    • (2000) Can. J. Plant Pathol , vol.22 , pp. 117-121
    • Heinz, R.A.1    Platt, H.W.B.2
  • 9
    • 0035213531 scopus 로고    scopus 로고
    • Comparison of rapid DNA extraction methods applied to contrasting New Zealand soils
    • Lloyd-Jones, G., and Hunter, D. W. F., 2001. Comparison of rapid DNA extraction methods applied to contrasting New Zealand soils. Soil Biol. Biochem, 33:2053–2059.
    • (2001) Soil Biol. Biochem , vol.33 , pp. 2053-2059
    • Lloyd-Jones, G.1    Hunter, D.W.F.2
  • 10
  • 11
    • 0035129246 scopus 로고    scopus 로고
    • Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments
    • Miller, D. N., 2001. Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments. J. Microbiol. Methods, 44:49–58.
    • (2001) J. Microbiol. Methods , vol.44 , pp. 49-58
    • Miller, D.N.1
  • 12
    • 78651416818 scopus 로고
    • Pathogenicity of Pythium species, Cylindrocarpon destructans, and Rhizoctonia solani to ginseng seedlings in Ontario
    • Reeleder, R. D., and Brammall, R. A., 1994. Pathogenicity of Pythium species, Cylindrocarpon destructans, and Rhizoctonia solani to ginseng seedlings in Ontario. Can. J. Plant Pathol, 16:311–316.
    • (1994) Can. J. Plant Pathol , vol.16 , pp. 311-316
    • Reeleder, R.D.1    Brammall, R.A.2
  • 13
    • 0038321310 scopus 로고    scopus 로고
    • Seed and root rots of ginseng (Panax quinquefolius) caused by Cylindrocarpon destructans and Fusarium spp
    • Reeleder, R. D., Roy, R., and Capell, B., 2002a. Seed and root rots of ginseng (Panax quinquefolius) caused by Cylindrocarpon destructans and Fusarium spp. J. Ginseng Res, 26:151–158.
    • (2002) J. Ginseng Res , vol.26 , pp. 151-158
    • Reeleder, R.D.1    Roy, R.2    Capell, B.3
  • 14
    • 4244037583 scopus 로고    scopus 로고
    • Use of a commercial paint shaker to extract fungal DNA from soil
    • Abstr
    • Reeleder, R. D., Capell, B., Tomlinson, L., Miller, J., and Hickey, W., 2002b. Use of a commercial paint shaker to extract fungal DNA from soil. Phytopathology, 92:S68 Abstr
    • (2002) Phytopathology , vol.92 , pp. S68
    • Reeleder, R.D.1    Capell, B.2    Tomlinson, L.3    Miller, J.4    Hickey, W.5
  • 15
    • 0034882012 scopus 로고    scopus 로고
    • Extraction and purification of microbial DNA from soil and sediment samples
    • Roose-Amsaleg, C. L., Garnier-Sillam, E., and Harry, M., 2001. Extraction and purification of microbial DNA from soil and sediment samples. Appl. Soil Ecol., 18:47–60.
    • (2001) Appl. Soil Ecol , vol.18 , pp. 47-60
    • Roose-Amsaleg, C.L.1    Garnier-Sillam, E.2    Harry, M.3
  • 17
    • 0032925880 scopus 로고    scopus 로고
    • Molecular analysis of microbial community structures in pristine and contaminated aquifers: field and laboratory microcosm experiments
    • Shi, Y., Zwolinski, M. D., Schreiber, M. E., Bahr, J. M., Sewell, G. W., and Hickey, W. J., 1999. Molecular analysis of microbial community structures in pristine and contaminated aquifers:field and laboratory microcosm experiments. Appl. Environ. Microbiol, 65:2143–2150.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 2143-2150
    • Shi, Y.1    Zwolinski, M.D.2    Schreiber, M.E.3    Bahr, J.M.4    Sewell, G.W.5    Hickey, W.J.6
  • 18
    • 0033854386 scopus 로고    scopus 로고
    • Pre-PCR DNA quantitation of soil and sediment samples: method development and instrument design. Soil Biol
    • Stark, P. C., Mullen, K. I., Banton, K., Russotti, R., Soran, D., and Kuske, C. R., 2000. Pre-PCR DNA quantitation of soil and sediment samples:method development and instrument design. Soil Biol. Biochem, 32:1101–1110.
    • (2000) Biochem , vol.32 , pp. 1101-1110
    • Stark, P.C.1    Mullen, K.I.2    Banton, K.3    Russotti, R.4    Soran, D.5    Kuske, C.R.6
  • 19
    • 0035379677 scopus 로고    scopus 로고
    • Application of the 5' fluorogenic exonuclease assay (Taqman) for quantitative ribosomal DNA and rRNA analysis in sediments
    • Stults, J. R., Snoeyenbos-West, O., Methe, B., Lovley, D. R., and Chandler, D. P., 2001. Application of the 5' fluorogenic exonuclease assay (Taqman) for quantitative ribosomal DNA and rRNA analysis in sediments. Appl. Environ. Microbiol, 67:2781–2789.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 2781-2789
    • Stults, J.R.1    Snoeyenbos-West, O.2    Methe, B.3    Lovley, D.R.4    Chandler, D.P.5
  • 20
    • 0028842856 scopus 로고
    • Direct DNA extraction for PCR-mediated assays of soil organisms
    • Volossiouk, T., Robb, E. J., and Nazar, R. N., 1995. Direct DNA extraction for PCR-mediated assays of soil organisms. Appl. Environ. Microbiol, 61:3972–3976.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 3972-3976
    • Volossiouk, T.1    Robb, E.J.2    Nazar, R.N.3
  • 21
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis M.A., Gelfand D.H., Sninsky J.J., White T.J., (eds), Toronto, Ont: Academic Press, Inc
    • White, T. J., Bruns, T., Lee, S., and Taylor, J., 1990. “ Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics ”. In PCR protocols:a guide to methods and applications, Edited by:Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., 315–322. Toronto, Ont:Academic Press, Inc.
    • (1990) PCR protocols: a guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 22
    • 54649084255 scopus 로고    scopus 로고
    • Methods for microbial DNA extraction from soil for PCR amplification
    • Yeates, C., Gillings, M. R., Davison, A. D., Altavilla, N., and Veal, D. A., 1998. Methods for microbial DNA extraction from soil for PCR amplification. Biological Procedures Online, 1:40–47. http://www.biologicalprocedures.com/bpo/arts/1/6/m6.htm, doi:10.1251/bpo6.
    • (1998) Biological Procedures Online , vol.1 , pp. 40-47
    • Yeates, C.1    Gillings, M.R.2    Davison, A.D.3    Altavilla, N.4    Veal, D.A.5
  • 23
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou, J., Bruns, M. A., and Tiedje, J. M., 1996. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol, 62:316–322.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.