Microarray analysis using amplified mRNA from laser capture microdissection of microscopic hepatocellular precancerous lesions and frozen hepatocellular carcinomas reveals unique and consistent gene expression profiles

Toxicologic Pathology

Volumn 31, Issue 3, 2003, Pages 295-303

  Yim, Sun Hee ^a   Ward, Jerrold M ^b   Dragan, Yvonne ^c   Yamada, Atsushi ^a   Scacheri, Peter C ^d   Kimura, Shioko ^a   Gonzalez, Frank J ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b NATIONAL CANCER INSTITUTE   (United States)

^c CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^d NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

Amplified mRNA; cDNA microarray; Indirect labeling; Laser capture microdissection

Indexed keywords

IMMUNOGLOBULIN HEAVY CHAIN; MESSENGER RNA; VIRUS LARGE T ANTIGEN;

ANALYTIC METHOD; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CELL POPULATION; CHEMICAL LABELING; CONTROLLED STUDY; CORRELATION COEFFICIENT; DNA MICROARRAY; DOT HYBRIDIZATION; FROZEN SECTION; GENE AMPLIFICATION; GENE EXPRESSION PROFILING; LASER CAPTURE MICRODISSECTION; LIVER ADENOMA; LIVER CELL CARCINOMA; NONHUMAN; PRECANCER; PRIORITY JOURNAL; RAT; SIMIAN VIRUS 40; TRANSGENIC ANIMAL;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; CARCINOMA, HEPATOCELLULAR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; LASERS; LIVER; LIVER NEOPLASMS, EXPERIMENTAL; MICRODISSECTION; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRECANCEROUS CONDITIONS; RATS; RATS, SPRAGUE-DAWLEY; RNA, MESSENGER;

ANIMALIA; SIMIAE; SIMIAN VIRUS 40;

EID: 0037572309     PISSN: 01926233     EISSN: None     Source Type: Journal    
DOI: 10.1080/01926230309753     Document Type: Article

References (16)

1. Bonner RF, Emmert-Buck M, Cole K, Pohida T, Chuaqui R, Goldstein S, Liotta LA (1997). Laser capture microdissection: Molecular analysis of tissue. Science 278: 1481-1483.
2. Daigo Y, Chin SF, Gorringe KL, Bobrow LG, Ponder BAJ, Pharoah PDP, Caldas C (2001). Degenerate oligonucleotide primed-polymerase chain reaction-based array comparative genomic hybridization for extensive amplicon profiling of breast cancers: A new approach for the molecular analysis of paraffin-embedded cancer tissue. Am J Pathol 158: 1623-1631.
3. Dragan Y, Valdes R, Gomez-Angelats M, Felipe A, Javier CF, Pitot H, Pastor-Anglada M (2000). Selective loss of nucleoside carrier expression in rat hepatocarcinomas. Hepatology 32: 239-246.
4. Eberwine J, Yeh H, Miyashiro K, Cao Y, Nair S, Finnell R, Zettel M, Coleman P (1992). Analysis of gene expression in single live neurons. Proc Natl Acad Sci USA 89: 3010-3014.
5. Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, Weiss RA, Liotta LA (1996). Laser capture microdissection. Science 274: 998-1001.
6. Gannot G, Gannot I, Vered H, Buchner A, Keisari Y (2002). Increase in immune cell infiltration with progression of oral epithelium from hyperkeratosis to dysplasia and carcinoma. Br J Cancer 86: 1444-1448.
7. Haines DC, Chattopadhyay S, Ward JM (2001). Pathology of aging B6;129 mice. Toxicol Pathol 29: 653-661.
8. Hully JR, Su Y, Lohse JK, Griep AE, Sattler CA, Haas MJ, Dragan Y, Peterson J, Neveu M, Pitot HC (1994). Transgenic hepatocarcinogenesis in the rat. Am J Pathol 145: 386-397.
9. Mills JC, Roth KA, Cagan RL, Gordon JI (2001). DNA microarrays and beyond: Completing the journey from tissue to cell. Nat Cell Biol 3: E175-E178.
10. Perou CM, Sorlie T, Eisen MB, van de RM, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge O, Pergamenschikov A, Williams C, Zhu SX, Lonning PE, Borresen-Dale AL, Brown PO, Botstein D (2000). Molecular portraits of human breast tumours. Nature 406: 747-752.
11. Sargent LM, Dragan YP, Sattler G, Xu YH, Wiley J, Pitot HC (1997). Specific chromosomal changes in albumin simian virus 40 T antigen transgenic rat liver neoplasms. Cancer Res 57: 3451-3456.
12. Scheidl SJ, Nilsson S, Kalen M, Hellstrom M, Takemoto M, Hakansson J, Lindahl P (2002). mRNA expression profiling of laser microbeam microdissected cells from slender embryonic structures. Am J Pathol 160: 801-813.
13. Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de RM, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Eystein LP, Borresen-Dale AL (2001). Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci USA 98: 10869-10874.
14. Verma M, Wright GL Jr, Hanash SM, Gopal-Srivastava R, Srivastava S (2001). Proteomic approaches within the NCI early detection research network for the discovery and identification of cancer biomarkers. Ann NY Acad Sci 945: 103-115.
15. Wang E, Miller LD, Ohnmacht GA, Liu ET, Marincola FM (2000). Highfidelity mRNA amplification for gene profiling. Nat Biotechnol 18: 457-459.
16. Xu XR, Huang J, Xu ZG, Qian BZ, Zhu ZD, Yan Q, Cai T, Zhang X, Xiao HS, Qu J, Liu F, Huang QH, Cheng ZH, Li NG, Du JJ, Hu W, Shen KT, Lu G, Fu G, Zhong M, Xu SH, Gu WY, Huang W, Zhao XT, Hu GX, Gu JR, Chen Z, Han ZG (2001). Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. Proc Natl Acad Sci USA 98: 15089-15094.