Possible consequences of fungal contamination on the RAPD fingerprinting in Miscanthus (Poaceae)

Australian Journal of Botany

Volumn 51, Issue 2, 2003, Pages 197-201

  Chiang, Yu Chung ^a   Chou, Chang Hung ^b   Huang, Shong ^a   Chiang, Tzen Yuh ^c  

^a NATIONAL TAIWAN NORMAL UNIVERSITY   (Taiwan)

^b INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^c NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FINGERPRINTING; FUNGUS; POLYMERASE CHAIN REACTION;

EMBRYOPHYTA; FUNGI; MISCANTHUS; MISCANTHUS SINENSIS; POACEAE;

EID: 0037544382     PISSN: 00671924     EISSN: None     Source Type: Journal    
DOI: 10.1071/BT02021     Document Type: Article

References (26)

1. Adams RP, Demeke T (1993) Systematic relationships in Juniperus based on random amplified polymorphic DNAs (RAPDs). Taxon 42, 553-571.
2. Baldwin BG (1992) Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molecular Phylogenetics and Evolution 1, 3-16.
3. Camacho FJ, Gernandt DS, Liston A, Stone JK, Klein AS (1997) Endophytic fungal DNA, the source of contamination in spruce needle DNA. Molecular Ecology 6, 983-988.
4. Chao S, Sederoff R, Levings IIICS (1984) Nucleotide sequence and evolution of the 18S ribosomal RNA gene in maize mitochondria. Nucleotide Acids Research 12, 6629-6644.
5. Chiang TY, Schaal BA, Peng CI (1998) Universal primers for amplification and sequencing a non-coding spacer between atpB and rbcL genes of chloroplast DNA. Botanical Bulletin of Academia Sinica 39, 245-250.
6. Chiang TY, Chiang YC, Chen YJ, Chou CH, Havanond S, Hong TN, Huang S (2001a) Phylogeography of Kandelia candel in east Asiatic mangroves based on nucleotide variation of chloroplast and mitochondrial DNAs. Molecular Ecology 10, 2697-2710.
7. Chiang YC, Chou CH, Lee PR, Chiang TY (2001b) Detection of leaf-associated fungi based on PCR and nucleotide sequence of the ribosomal internal transcribed spacer (ITS) in Miscanthus. Botanical Bulletin of Academia Sinica 42, 39-44.
8. Hanson RS, Hanson TE (1996) Methanotropic bacteria. Microbiology Review 60, 439-471.
9. Holme IB, Petersen KK (1996) Callus induction and plant regeneration from different explant types of Miscanthus x ogiformis Honda 'Giganteus'. Plant-cell, Tissue-Organ-Culture 45, 43-52.
10. Huang JC, Wang WK, Hong KH, Chiang TY (2001) Population differentiation and phylogeography of Hygrophila pogonocalyx based on RAPDs fingerprints. Aquatic Botany 70, 269-280.
11. Hudson AJ (1995) Fungal cytochrome c gene from plants. Journal of Molecular Evolution 41, 1170-1171.
12. Lee SJ (1995) Taxonomy of Miscanthus of Taiwan. PhD Dissertation, Department of Botany, National Taiwan University, Taipei.
13. Legault D, Dessureault M, Laflamme G (1989) Mycoflore des aiguiles de Pinus banksiana et Pinus resinosa. I. Champignons endophytes. Canadian Journal of Botany 72, 1108-1113.
14. Mazzucato A, Barcaccia G, Pezzotti M, Falcinelli M (1995) Biochemical and molecular markers for investigating the mode of reproduction in the facultative apomict Poa pratensis L. Sexual Plant Reproduction 8, 133-138.
15. Miller MP (1997) 'TFPGA: tools for population genetic analyses.' A Windows program for analysis of allozyme data and molecular population genetic data. Version 1.3. (Department of Biological Sciences, Northern Arizona University: Flagstaff, AZ)
16. Miller MP (1998) 'AMOVA-PREP 1.01: a program for the preparation of the AMOVA input files from dominant-marker raw data.' (Department of Biological Sciences, Northern Arizona University: Flagstaff, AZ)
17. Murashige T, Skoog F (1962) A revised medium for rapid growth and bio-assays with tobacco tissue cultures. Physiology of Plants 15, 473-497.
18. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight DNA. Nucleotide Acids Research 8, 4321-4325.
19. Nakase T, Itoh M, Suzuki M (1987) Sporobolomyces falcatus sp. nov., isolated from a dead leaf of Miscanthus sinensis in Japan. Transactions of Mycological Society of Japan 28, 295-301.
20. Ortiz JPA, Pessino SC, Leblane O, Hayward MD, Quarin CL (1997) Genetic fingerprinting for determining the mode of reproduction in Paspalum notatum, a subtropical apomictic forage grass. Theoretical and Applied Genetics 95, 850-856.
21. Petrini O, Sieber TN, Toti L, Viret O (1992) Ecology, metabolite production, and substrate utilization in endophytic fungi. Natural Toxin 1, 185-196.
22. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17, 1105-1109.
23. Watson L, Dallwitz MF (1992) 'The grass genera of the world.' (CABI Press: New York)
24. Waugh R, Baird E, Powell W (1992) The use of RAPD markers for the detection of gene introgression in potato. Plant Cell Report 11, 466-469.
25. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In 'PCR protocols. A guide to methods and applications'. (Eds MA Innis, DH Gelfand, JJ Sninsky, TJ White) pp. 315-324. (Academic Press: San Diego)
26. Wirgin I, Maceda L, Stabile J, Mesing K (1997) An evaluation of introgression of Atlantic coast striped bass mitochondrial DNA in a Gulf Mexican population using formalin-preserved museum collections. Molecular Ecology 6, 907-916.