MolCom: A method to compare protein molecules based on 3-D structural and chemical similarity

Protein Engineering

Volumn 16, Issue 3, 2003, Pages 169-178

  O'Hearn, S D ^a   Kusalik, A J ^b   Angel, J F ^b  

^a NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^b UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

3 D protein structure comparison; MolCom

Indexed keywords

ACCURACY; ALGORITHM; ALPHA HELIX; ARTICLE; AUTOMATION; CALIBRATION; COMPARATIVE STUDY; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN STRUCTURE;

EID: 0037542597     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/proeng/gzg016     Document Type: Article

References (22)

1. Alexandrov, N.N. and Fischer, D. (1996) Proteins, 25, 354-365.
2. Alexandrov, N.N. Takahashi, K. and Go, N. (1992) J. Mol. Biol., 225, 5-9.
3. Collaborative Computational Project No. 4 (1994) Acta Crystallogr, P50, 760-763.
4. Falicov, A. and Cohen, F.E. (1996) J. Mol. Biol., 258, 871-892.
5. Foley, J.D., van Dam, A., Feiner, S.K. and Hughes, J.F. (1990) Computer Graphics, Principles and Practice. Addison-Wesley, Reading, MA.
6. Gilbert, D. and Westhead, D. (1998) http//www.ebi.ac.uk/~drg/epsrc-vffepsrc-report-long.html.
7. Gilbrat, J.F., Madej, T. and Bryant, S.H. (1996) Curr Opin. Struct. Biol., 6, 377-385.
8. Holm, L. and Sander C. (1993) J. Mol. Biol., 233, 123-138.
9. Hyams, D.(1997) http//www.ebicom.net/~dhyams/cmain.htm.
10. Humphrey, W., Dalke, A. and Schulten K. (1996) J. Mol. Graphics, 14, 33-38.
11. Lehninger, A.L., Nelson, D.L. and Cox, M.M. (1993) Principles of Biochemistry. Worth, New York.
12. Mezey, P.G. (1993) Shape in Chemistry, an Introduction to Molecular Shape and Topology. VCH, New York.
13. Murzin, A.G., Brenner, S.E., Hubbard, T.J.P. and Chothia C. (1998) http//scop. mrc-lmb.cam.ac.uk/scop/intro.html
14. O'Hearn, S. (2000) Thesis, University of Saskatchewan. http//www.octtech. com/publications/ohearn_thesis.pdf.
15. O'Hearn, S. and Kusalik, A. (2000) P073, Intelligent Systems for Molecular Biology. http//ismb2000.sdsc.edu/posters_abstracts/MondayPS.html (download, http//www.octtech.com/publications/ohearn_poster.pdf).
16. O'Hearn, S., Kusalik, A. and Angel J (2002) The Protein 3-D Structure Alignment Web Site. http//www.octtech.com/MolCom3D.
17. Prasad, L, Hayakawa, K., Leduc, Y. and Delbaere, L. (2001) P097. American Crystallographic Association Abstracts. http//www.hwi.buffalo.edu/ACA/ACA01/abstracts/PSII.html
18. Sander, C. and Holm, L. (1993) J. Mol. Biol., 233, 123-138.
19. Sander, C. and Holm, L. (1996) Science, 273, 595-602.
20. Shindyalov, I.N. and Bourne, P.E. (1998) Protein Eng., 11, 739-747.
21. Shortle, D. (1998) Curr. Biol., 7, 151-154.
22. Taylor, W.R. and Orengo, C.A. (1989) J. Mol. Biol., 208, 1-22.