Assessment of differential gene expression in human peripheral nerve injury

BMC Genomics

Volumn 3, Issue , 2002, Pages

  Xiao, Yuanyuan ^a   Segal, Mark R ^b   Rabert, Douglas ^c   Ahn, Andrew H ^a   Anand, Praveen ^d   Sangameswaran, Lakshmi ^e   Hu, Donglei ^a   Hunt, Anthony ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c ROCHE BIOSCIENCE   (United States)

^d IMPERIAL COLLEGE LONDON   (United Kingdom)

^e Pherin Pharmaceuticals   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOKINE; MYELIN; MYOSIN HEAVY CHAIN; MYOSIN LIGHT CHAIN; MYOSIN LIGHT CHAIN KINASE; NEUROTROPHIN;

ARTICLE; BRACHIAL PLEXUS INJURY; CONTROLLED STUDY; DNA MICROARRAY; DOWN REGULATION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC IDENTIFICATION; GENETIC SCREENING; GENETIC SELECTION; GENETIC TRANSCRIPTION; HUMAN; HUMAN TISSUE; PERIPHERAL NERVE INJURY; PROTEIN FUNCTION; RNA TRANSLATION; SIGNAL TRANSDUCTION; STUDENT T TEST; UPREGULATION;

EID: 0037502391     PISSN: 14712164     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2164-3-28     Document Type: Article

References (21)

1. Berman JS, Birch R, Anand P: Pain following human brachial plexus injury with spinal cord root avulsion and the effect of surgery Pain 1998, 75:199-207
2. Avulsion Dataset Home Page [http://itsa.ucsf.edu/~yxiao/Avulsion]
3. Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001, 98:5116-5121
4. Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc B 1995, 57:289-300
5. Storey JD: A direct approach to false discovery rates. J Roy Stat Soc B 2001
6. Storey JD, Tibshirani R: Estimating false discovery rates under dependence, with applications to DNA microarrays. Stanford: Stanford University, Department of Statistics; Report No.: Technical Report 2001-28 2001
7. Dudoit S, Yang Y, Callow M, Speed T: Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments, Report No.: Technical Report #578. 2000
8. Callow MJ, Dudoit S, Gong EL, Speed TP, Rubin EM: Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. Genome Res 2000, 10:2022-2029
9. Working with Multiple Microarrays [http://biosun1.harvard. edu/~rgentlem/Wshop/lect2.pdf]
10. Thomas JG, Olson JM, Tapscott SJ, Zhao LP: An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Res 2001, 11:1227-1236
11. Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, et al: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999, 286:531-537
12. Lonnstedt I, Speed TP: Replicated Microarray Data. Statistical Sinica 2002, 12: [http://stat-www.berkeley.edu/users/terry/zarray/Html/papersindex.html]
13. Facer P, Mann D, Mathur R, Pandya S, Ladiwala U, Singhal B, Hongo JA, Sinicropi DV, Terenghi G, Anand P: Do nerve growth factor-related mechanisms contribute to loss of cutaneous nociception in leprosy? Pain 2000, 85:231-238
14. Yoshida Y, Ikematsu S, Moritoyo T, Goto M, Tsutsui J, Sakuma S, Osame M, Muramatsu T: Intraventricular administration of the neurotrophic factor midkine ameliorates hippocampal delayed neuronal death following transient forebrain ischemia in gerbils. Brain Res 2001, 894:46-55
15. Konishi Y, Takahashi K, Chui DH, Rosenfeld RG, Himeno M, Tabira T: Insulin-like growth factor II promotes in vitro cholinergic development of mouse septal neurons: comparison with the effects of insulin-like growth factor I. Brain Res 1994, 649:53-61
16. Yu WH, Lukiw WJ, Bergeron C, Niznik HB, Fraser PE: Metallothionein III is reduced in Alzheimer's disease. Brain Res 2001, 894:37-45
17. Westfall PH, Young SS: Resampling-based Multiple testing: examples and methods for p-value adjustment. New York: Wiley; 1993
18. Shaffer JP: Multiple Hypothesis Testing. Annu Rev Psychol 1995, 46:561-584
19. Holland BB, Cheung SH: Familywise robustness criteria for multiple-comparison procedures. J Roy Stat Soc B 2002, 64: 3-77
20. Wu TD: Analysing gene expression data from DNA microarrays to identify candidate genes. J Pathol 2001, 195:53-65
21. Smyt GK, Yang YH, Speed TP: Statistical issues in cDNA microarray data analysis. 2002 [http://www.stat.Berkeley.EDU/users/terry/zarray/Html/papersindex.html]