Biochemical analysis of the yeast condensin Smc2/4 complex: An ATPase that promotes knotting of circular DNA

Journal of Biological Chemistry

Volumn 278, Issue 28, 2003, Pages 26238-26248

  Stray, James E ^b   Lindsley, Janet E ^a  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; DIMERS; DNA; HYDROLYSIS; TITRATION; YEAST;

PLASMIDS;

BIOCHEMISTRY;

ADENOSINE PHOSPHATE; ADENOSINE TRIPHOSPHATASE; CIRCULAR DNA; CONDENSIN; DNA TOPOISOMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING); DOUBLE STRANDED DNA; FUNGAL PROTEIN; MUTANT PROTEIN; NUCLEOTIDE; PROTEIN SMC2; PROTEIN SMC4; UNCLASSIFIED DRUG;

ARTICLE; BIOCHEMISTRY; COMPLEX FORMATION; DNA SUPERCOILING; ENZYME ACTIVITY; GENE CONSTRUCT; GENETIC COMPLEMENTATION; HYDROLYSIS; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN INTERACTION; SEDIMENTATION; YEAST;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; ANIMALS; BINDING, COMPETITIVE; CARRIER PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; DIMERIZATION; DNA; DNA, CIRCULAR; DOSE-RESPONSE RELATIONSHIP, DRUG; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENETIC COMPLEMENTATION TEST; HYDROLYSIS; KINETICS; MODELS, MOLECULAR; NUCLEAR PROTEINS; PLASMIDS; PROTEIN BINDING; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE PROTEINS; ULTRAVIOLET RAYS; XENOPUS;

PROKARYOTA; SACCHAROMYCETALES;

EID: 0037492126     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M302699200     Document Type: Article

References (60)

1. Cobbe, N., and Heck, M. M. (2000) J. Struct. Biol. 129, 123-143
2. Hirano, T. (1999) Genes Dev. 13, 11-19
3. Losada, A., and Hirano, T. (2001) Bioessays 23, 924-935
4. Hirano, T. (2002) Genes Dev. 16, 399-414
5. Harvey, S. H., Krien, M. J., and O'Connell, M. J. (2002) Genome Biol. 3, 1-5
6. Walker, J. E., Saraste, M., Runswick, M. J., and Gay, N. J. (1982) EMBO J. 1, 945-951
7. Strunnikov, A. V., Larionov, V. L., and Koshland, D. (1993) J. Cell Biol. 123, 1635-1648
8. Saitoh, N., Goldberg, I. G., Wood, E. R., and Earnshaw, W. C. (1994) J. Cell Biol. 127, 303-318
9. Hirano, T., and Mitchison, T. J. (1994) Cell 79, 449-458
10. Hirano, T., and Mitchison, T. J. (1991) J. Cell Biol. 115, 1479-1489
11. Strunnikov, A. V., Hogan, E., and Koshland, D. (1995) Genes Dev. 9, 587-599
12. Hirano, T., Kobayashi, R., and Hirano, M. (1997) Cell 89, 511-521
13. Kimura, K., and Hirano, T. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 11972-11977
14. Sutani, T., Yuasa, T., Tomonaga, T., Dohmae, N., Takio, K., and Yanagida, M. (1999) Genes Dev. 13, 2271-2283
15. Strunnikov, A. V., and Jessberger, R. (1999) Eur. J. Biochem. 263, 6-13
16. Hopfner, K. P., Karcher, A., Shin, D. S., Craig, L., Arthur, L. M., Carney, J. P., and Tainer, J. A. (2000) Cell 101, 789-800
17. Melby, T. E., Ciampaglio, C. N., Briscoe, G., and Erickson, H. P. (1998) J. Cell Biol. 142, 1595-1604
18. Hirano, M., and Hirano, T. (2002) EMBO J. 21, 5733-5744
19. Haering, C. H., Lowe, J., Hochwagen, A., and Nasmyth, K. (2002) Mol. Cell 9, 773-788
20. Hopfner, K. P., Craig, L., Moncalian, G., Zinkel, R. A., Usui, T., Owen, B. A., Karcher, A., Henderson, B., Bodmer, J. L., McMurray, C. T., Carney, J. P., Petrini, J. H., and Tainer, J. A. (2002) Nature 418, 562-566
21. Bazett-Jones, D. P., Kimura, K., and Hirano, T. (2002) Mol. Cell 9, 1183-1190
22. Kimura, K., and Hirano, T. (1997) Cell 90, 625-634
23. Kimura, K., Rybenkov, V. V., Crisona, N. J., Hirano, T., and Cozzarelli, N. R. (1999) Cell 98, 239-248
24. Kimura, K., Hirano, M., Kobayashi, R., and Hirano, T. (1998) Science 282, 487-490
25. Wasserman, R. A., and Wang, J. C. (19944) J. Biol. Chem. 269, 20943-20951
26. Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., Chu, A. M., Connelly, C., Davis, K., Dietrich, F., Dow, S. W., El Bakkoury, M., Foury, F., Friend, S. H., Gentalen, E., Giaever, G., Hegemann, J. H., Jones, T., Laub, M., Liao, H., Davis, R. W., et al. (1999) Science 285, 901-906
27. Wach, A., Brachat, A., Pohlmann, R., and Philippsen, P. (1994) Yeast 10, 1793-1808
28. Gietz, R. D., Schiestl, R. H., Willems, A. R., and Woods, R. A. (1995) Yeast 11, 355-360
29. Huxley, C., Green, E. D., and Dunham, I. (1990) Trends Genet. 6, 236
30. Freeman, L., Aragon-Alcaide, L., and Strunnikov, A. (2000) J. Cell Biol. 149, 811-824
31. Lavoie, B. D., Hogan, E., and Koshland, D. (2002) J. Cell Biol. 156, 805-815
32. Giaever, G. N., and Wang, J. C. (1988) Cell 55, 849-856
33. Morris, S. K., Harkins, T. T., Tennyson, R. B., and Lindsley, J. E. (1999) J. Biol. Chem. 274, 3446-3452
34. Baird, C. L., Harkins, T. T., Morris, S. K., and Lindsley, J. E. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 13685-13690
35. Schmidt, T. G., Koepke, J., Frank, R., and Skerra, A. (1996) J. Mol. Biol. 255, 753-766
36. Voss, S., and Skerra, A. (1997) Protein Eng. 10, 975-982
37. Worland, S. T., and Wang, J. C. (1989) J. Biol. Chem. 264, 4412-4416
38. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326
39. Johnson, M. L., Correia, J. J., Yphantis, D. A., and Halvorson, H. R. (1981) Biophys. J. 36, 575-588
40. Cohn, E. J., and Edsall, J. T. (1943) in Proteins, Amino Acids, and Peptides as Ions and Dipolarions, Reinhold, New York
41. Senear, D. F., Laue, T. M., Ross, J. B., Waxman, E., Eaton, S., and Rusinova, E. (1993) Biochemistry 32, 6179-6189
42. Hansen, J. C., Lebowitz, J., and Demeler, B. (1994) Biochemistry 33, 13155-13163
43. Laue, T. M. (1995) Methods Enzymol. 259, 427-452
44. Lindsley, J. E., and Wang, J. C. (1993) J. Biol. Chem. 268, 8096-8104
45. Harkins, T. T., and Lindsley, J. E. (1998) Biochemistry 37, 7292-7298
46. Dynan, W. S., Jendrisak, J. J., Hager, D. A., and Burgess, R. R. (1981) J. Biol. Chem. 256, 5860-5865
47. Christianson, T. W., Sikorski, R. S., Dante, M., Shero, J. H., and Hieter, P. (1992) Gene 110, 119-122
48. Hsieh, T. S., and Wang, J. C. (1975) Biochemistry 14, 527-535
49. Sutani, T., and Yanagida, M. (1997) Nature 388, 798-801
50. Anderson, D. E., Losada, A., Erickson, H. P., and Hirano, T. (2002) J. Cell Biol. 156, 419-424
51. Yoshimura, S. H., Hizume, K., Murakami, A., Sutani, T., Takeyasu, K., and Yanagida, M. (2002) Curr. Biol. 12, 508-513
52. Hirano, M., and Hirano, T. (1998) EMBO J. 17, 7139-7148
53. Hirano, M., Anderson, D. E., Erickson, H. P., and Hirano, T. (2001) EMBO J. 20, 3238-3250
54. Losada, A., and Hirano, T. (2001) Curr. Biol. 11, 268-272
55. Lowe, J., Cordell, S. C., and van den Ent, F. (2001) J. Mol. Biol. 306, 25-35
56. Senior, A. E., al-Shawi, M. K., and Urbatsch, I. L. (1995) FEBS Lett. 377, 285-289
57. Loo, T. W., and Clarke, D. M. (1994) J. Biol. Chem. 269, 7750-7755
58. Hrycyna, C. A., Ramachandra, M., Ambudkar, S. V., Ko, Y. H., Pedersen, P. L., Pastan, I., and Gottesman, M. M. (1998) J. Biol. Chem. 273, 16631-16634
59. Holland, I. B., and Blight, M. A. (1999) J. Mol. Biol. 293, 381-399
60. Boles, T. C., White, J. H., and Cozzarelli, N. R. (1990) J. Mol. Biol. 213, 931-951