-
1
-
-
0033367329
-
Mitochondrial genome evolution and the origin of eukaryotes
-
Lang, B. F., Gray, M. W., and Burger, G. (1999) Mitochondrial genome evolution and the origin of eukaryotes. Ann. Rev. Genet. 33, 351-397.
-
(1999)
Ann. Rev. Genet.
, vol.33
, pp. 351-397
-
-
Lang, B.F.1
Gray, M.W.2
Burger, G.3
-
2
-
-
0031007907
-
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
-
Lang, B. F., Burger, G., O'Kelly, C. J., Cedergren, R., Golding, G. B., Lemieux, C., Sankoff, D., Turmel, M., and Gray, M. W. (1997) An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 387, 493-497.
-
(1997)
Nature
, vol.387
, pp. 493-497
-
-
Lang, B.F.1
Burger, G.2
O'Kelly, C.J.3
Cedergren, R.4
Golding, G.B.5
Lemieux, C.6
Sankoff, D.7
Turmel, M.8
Gray, M.W.9
-
3
-
-
0000527581
-
Organellar evolution
-
(Roberts, D.M., Sharp, P., Alderson, G., and Collins, M., eds), University Press, Cambridge
-
Gray, M. W. and Spencer, D. F. (1996) Organellar evolution. In Evotution of Microbial Life (Roberts, D.M., Sharp, P., Alderson, G., and Collins, M., eds). pp. 109-126, University Press, Cambridge.
-
(1996)
Evolution of Microbial Life
, pp. 109-126
-
-
Gray, M.W.1
Spencer, D.F.2
-
4
-
-
0032512051
-
The genome sequence of Rickettsia powazekii and the origin of mitochondria
-
Andersson, S. G., Zomorodipour, A., Andersson, J. O., Sicheritz-Pontén, T., Alsmark, U. C. M., Podowski, R. M., Näslund, A. K., Eriksson, A.-S., Winkler, H. H., and Kurland, C. G. (1998) The genome sequence of Rickettsia powazekii and the origin of mitochondria. Nature 396, 133-140.
-
(1998)
Nature
, vol.396
, pp. 133-140
-
-
Andersson, S.G.1
Zomorodipour, A.2
Andersson, J.O.3
Sicheritz-Pontén, T.4
Alsmark, U.C.M.5
Podowski, R.M.6
Näslund, A.K.7
Eriksson, A.-S.8
Winkler, H.H.9
Kurland, C.G.10
-
5
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J. (1978) Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
6
-
-
0032425482
-
The diverse and dynamic structure of bacterial genomes
-
Casjens, S. (1998) The diverse and dynamic structure of bacterial genomes. Annu. Rev. Genet. 32, 339-377.
-
(1998)
Annu. Rev. Genet.
, vol.32
, pp. 339-377
-
-
Casjens, S.1
-
7
-
-
0035931926
-
Massive gene decay in the leprosy bacillus Mycobacterium leprae
-
Cole, S. T., Eiglmeier, K., Parkhill, J., James, K. D., Thomson, N. R., and Wheeler, P. R. (2001) Massive gene decay in the leprosy bacillus Mycobacterium leprae. Nature 409, 1007-1011.
-
(2001)
Nature
, vol.409
, pp. 1007-1011
-
-
Cole, S.T.1
Eiglmeier, K.2
Parkhill, J.3
James, K.D.4
Thomson, N.R.5
Wheeler, P.R.6
-
8
-
-
0034618559
-
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
-
Shigenobu, S., Watanabe, H., Hattori, M., Sakaki, Y., and Ishikawa, H. (2000) Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407, 81-86.
-
(2000)
Nature
, vol.407
, pp. 81-86
-
-
Shigenobu, S.1
Watanabe, H.2
Hattori, M.3
Sakaki, Y.4
Ishikawa, H.5
-
9
-
-
0036842986
-
Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia
-
online publication
-
Akman, L., Yamashita, A., Watanabe, H., Oshima, K., Shiba, T., Hattori, M., and Aksoy, S. (2002) Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. Nature Genet. (online publication) 32, 402-407.
-
(2002)
Nature Genet.
, vol.32
, pp. 402-407
-
-
Akman, L.1
Yamashita, A.2
Watanabe, H.3
Oshima, K.4
Shiba, T.5
Hattori, M.6
Aksoy, S.7
-
10
-
-
0035081952
-
Determination of Wolbachia genome size by pulsed-field gel electrophoresis
-
Sun, L. V., Foster, J. M., Tzertzinis, G., Ono, M., Bandi, C., Slatko, B. E., and O'Neill, S. L. (2001) Determination of Wolbachia genome size by pulsed-field gel electrophoresis. J. Bacteriol. 183, 2219-2225.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2219-2225
-
-
Sun, L.V.1
Foster, J.M.2
Tzertzinis, G.3
Ono, M.4
Bandi, C.5
Slatko, B.E.6
O'Neill, S.L.7
-
11
-
-
0036847064
-
Genome evolution in bacterial endosymbionts of insects
-
Wernegreen, J. J. (2002) Genome evolution in bacterial endosymbionts of insects. Nature Rev. Genet. 3, 850-861.
-
(2002)
Nature Rev. Genet.
, vol.3
, pp. 850-861
-
-
Wernegreen, J.J.1
-
13
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
Fleischmann, R.D.6
Bult, C.J.7
Kerlavage, A.R.8
Sutton, G.9
Kelley, J.M.10
-
14
-
-
0003290921
-
Fungal evolution meets fungal genomics
-
in press, (Arora, C., ed). Marcel Dekker Inc., New York
-
Leigh, J., Seif, E., Rodriguez, N., Jacob, Y., and Lang, B. F. (in press) Fungal evolution meets fungal genomics. In Handbook of Fungal Biotechnology, 2nd edition (Arora, C., ed). Marcel Dekker Inc., New York.
-
Handbook of Fungal Biotechnology, 2nd Edition
-
-
Leigh, J.1
Seif, E.2
Rodriguez, N.3
Jacob, Y.4
Lang, B.F.5
-
15
-
-
0036021697
-
Genome deterioration: Loss of repeated sequences and accumulation of junk DNA
-
Frank A. C., Amiri, H., and Andersson S. G. E. (2002) Genome deterioration: loss of repeated sequences and accumulation of junk DNA. Genetica 115, 1-12.
-
(2002)
Genetica
, vol.115
, pp. 1-12
-
-
Frank, A.C.1
Amiri, H.2
Andersson, S.G.E.3
-
16
-
-
0025334495
-
A mollicute (mycoplasma) DNA repair enzyme: Purification and characterization of uracil-DNA glycosylase
-
Williams, M. V., and Pollack, J. D. (1990) A mollicute (mycoplasma) DNA repair enzyme: purification and characterization of uracil-DNA glycosylase. J. Bacteriol. 172, 2979-2985.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 2979-2985
-
-
Williams, M.V.1
Pollack, J.D.2
-
17
-
-
0034835968
-
How mitochondria redefine the code
-
Knight, R. D., Landweber, L. F., and Yarus, M. (2001) How mitochondria redefine the code. J. Mol. Evol. 53, 299-313.
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 299-313
-
-
Knight, R.D.1
Landweber, L.F.2
Yarus, M.3
-
18
-
-
0029563247
-
Interchromosomal recombination in the extremely radioresistant bacterium Deinococccus radiodurans
-
Daly, M. J., and Minton, K. W. (1995) Interchromosomal recombination in the extremely radioresistant bacterium Deinococccus radiodurans. J. Bacteriol 177, 5495-5505.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5495-5505
-
-
Daly, M.J.1
Minton, K.W.2
-
19
-
-
0037195120
-
Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect
-
Kondo, N., Nikoh, N., Ijichi, N., Shimada, M., and Fukatsu, T. (2002) Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect. Proc. Natl. Acad. Sci. USA 99, 14280-14285.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14280-14285
-
-
Kondo, N.1
Nikoh, N.2
Ijichi, N.3
Shimada, M.4
Fukatsu, T.5
-
20
-
-
0026673926
-
Silent mitochondrial and active nuclear genes for subunit 2 of cytochrome c oxidase (cox2) in soybean: Evidence for RNA-mediated gene transfer
-
Covello, P. S., and Gray, M. W. (1992) Silent mitochondrial and active nuclear genes for subunit 2 of cytochrome c oxidase (cox2) in soybean: evidence for RNA-mediated gene transfer. EMBO J. 11, 3815-3820.
-
(1992)
EMBO J.
, vol.11
, pp. 3815-3820
-
-
Covello, P.S.1
Gray, M.W.2
-
21
-
-
0026091126
-
RNA-mediated transfer of the gene cox from the mitochondrion to the nucleus during flowering plant evolution
-
Nugent, J. M., and Palmer, J. D. (1991) RNA-mediated transfer of the gene cox from the mitochondrion to the nucleus during flowering plant evolution. Cell 66, 473-481.
-
(1991)
Cell
, vol.66
, pp. 473-481
-
-
Nugent, J.M.1
Palmer, J.D.2
-
22
-
-
0035999379
-
Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts
-
Adams, K. L., Daley, D. O., Whelan, J., and Palmer, J. D. (2002) Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell 14, 931-943.
-
(2002)
Plant Cell
, vol.14
, pp. 931-943
-
-
Adams, K.L.1
Daley, D.O.2
Whelan, J.3
Palmer, J.D.4
-
23
-
-
0016776796
-
Native and imported transfer RNA in mitochondria
-
Chiu, N., Chiu, A., and Suyama, Y. (1975) Native and imported transfer RNA in mitochondria. J. Mol. Biol. 99, 37-50.
-
(1975)
J. Mol. Biol.
, vol.99
, pp. 37-50
-
-
Chiu, N.1
Chiu, A.2
Suyama, Y.3
-
24
-
-
0031464189
-
On the evolution of the single-subunit RNA polymerases
-
Cermakian, N., Ikeda, T. M., Miramontes, P., Lang, B. F., Gray, M. W., and Cedergren R. (1997) On the evolution of the single-subunit RNA polymerases. J. Mol. Evol. 45, 671-681.
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 671-681
-
-
Cermakian, N.1
Ikeda, T.M.2
Miramontes, P.3
Lang, B.F.4
Gray, M.W.5
Cedergren, R.6
-
25
-
-
0031979635
-
Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: A possible case of gene transfer from the nucleus to the mitochondrion
-
Pont-Kingdon, G., Okada, N. A., Macfarlane, J. L., Beagley, C. T., Watkins-Sims, C. D., Cavalier-Smith, T., Clark-Walker, G. D., and Wolstenholme, D. R. J. (1998) Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion. J. Mol. Evol. 46, 419-431.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 419-431
-
-
Pont-Kingdon, G.1
Okada, N.A.2
Macfarlane, J.L.3
Beagley, C.T.4
Watkins-Sims, C.D.5
Cavalier-Smith, T.6
Clark-Walker, G.D.7
Wolstenholme, D.R.J.8
-
26
-
-
0028853630
-
Transfer RNA import into plant mitochondria
-
Marechal-Drouard, L., Small, I., Weil, J. H., and Dietrich, A. (1995) Transfer RNA import into plant mitochondria. Methods Enzymol. 260, 310-327.
-
(1995)
Methods Enzymol.
, vol.260
, pp. 310-327
-
-
Marechal-Drouard, L.1
Small, I.2
Weil, J.H.3
Dietrich, A.4
-
27
-
-
0034806951
-
The chloroplast-derived trnW and trnM_e genes are not expressed in Arabidopsis mitochondria
-
Duchene, A. M. and Marechal-Drouard L. (2001) The chloroplast-derived trnW and trnM_e genes are not expressed in Arabidopsis mitochondria. Biochem. Biophys. Res. Commun. 285, 1213-1216.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.285
, pp. 1213-1216
-
-
Duchene, A.M.1
Marechal-Drouard, L.2
-
28
-
-
0034882969
-
The Human Genome Project reveals a continuous transfer of large mitochondrial fragments to the nucleus
-
Mourier, T., Hansen, A. J., Willerslev, E., and Arctander, P. (2001) The Human Genome Project reveals a continuous transfer of large mitochondrial fragments to the nucleus. Mol. Biol. Evol. 18. 1833-1837.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1833-1837
-
-
Mourier, T.1
Hansen, A.J.2
Willerslev, E.3
Arctander, P.4
-
29
-
-
0035942234
-
Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats
-
Stupar, R. M., Lilly, J. W., Town, C. D., Cheng, Z., Kaul, S., Buell, C. R., and Jiang, J. (2001) Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats. Proc. Natl. Acad. Sci. USA 98, 5099-5103.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5099-5103
-
-
Stupar, R.M.1
Lilly, J.W.2
Town, C.D.3
Cheng, Z.4
Kaul, S.5
Buell, C.R.6
Jiang, J.7
-
30
-
-
0033523903
-
Mitochondrial DNA repairs double-strand breaks in yeast chromosomes
-
Ricchetti, M., Fairhead, C., and Dujon, B. (1999) Mitochondrial DNA repairs double-strand breaks in yeast chromosomes. Nature 402, 96-100.
-
(1999)
Nature
, vol.402
, pp. 96-100
-
-
Ricchetti, M.1
Fairhead, C.2
Dujon, B.3
-
31
-
-
0027787578
-
The hydrogenosome
-
Müller, M. (1993) The hydrogenosome. J. Gen. Microbiol. 139, 2879-2889.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 2879-2889
-
-
Müller, M.1
-
32
-
-
0033020661
-
Hsp60 is targeted to a cryptic mitochondrion-derived organelle (≪crypton≫) in the microaerophilic protozoan parasite Entamoeba histolytica
-
Mai, Z., Ghosh, S., Frisardi, M., Rosenthal, B., Rogers, R., and Samuelson J. (1999) Hsp60 is targeted to a cryptic mitochondrion-derived organelle (≪crypton≫) in the microaerophilic protozoan parasite Entamoeba histolytica. Mol. Cell. Biol. 19, 2198-2205.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 2198-2205
-
-
Mai, Z.1
Ghosh, S.2
Frisardi, M.3
Rosenthal, B.4
Rogers, R.5
Samuelson, J.6
-
33
-
-
0022532186
-
Why mitochondria need a genome
-
von Heijne, G. (1986) Why mitochondria need a genome. FEBS Lett. 198, 1-4.
-
(1986)
FEBS Lett.
, vol.198
, pp. 1-4
-
-
Von Heijne, G.1
-
34
-
-
0027724036
-
Control of gene expression by redox potential and the requirement or chloroplast and mitochondrial genomes
-
Allen, J. F. (1993) Control of gene expression by redox potential and the requirement or chloroplast and mitochondrial genomes. J. Theor. Biol. 165, 609-631.
-
(1993)
J. Theor. Biol.
, vol.165
, pp. 609-631
-
-
Allen, J.F.1
-
35
-
-
0041401720
-
The dual origin of the yeast mitochondrial proteome
-
Karlberg, O., Canback, B., Kurland, C. G., and Andersson, S. G. (2000) The dual origin of the yeast mitochondrial proteome. Yeast 17, 170-187.
-
(2000)
Yeast
, vol.17
, pp. 170-187
-
-
Karlberg, O.1
Canback, B.2
Kurland, C.G.3
Andersson, S.G.4
-
36
-
-
0034710981
-
Localizing proteins in the cell from their phylogenetic profiles
-
Marcotte, E. M., Xenarios, I., van Der Bliek, A. M., and Eisenberg, D. (2000) Localizing proteins in the cell from their phylogenetic profiles. Proc. Natl. Acad. Sci. USA 97, 12115-12120.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12115-12120
-
-
Marcotte, E.M.1
Xenarios, I.2
Van Der Bliek, A.M.3
Eisenberg, D.4
-
37
-
-
0034913239
-
The origin and early evolution of mitochondria
-
reviews
-
Gray, M. W., Burger, G., and Lang, B. F. (2001) The origin and early evolution of mitochondria. Genome Biology 2, reviews 1018.1-1018.5.
-
(2001)
Genome Biology
, vol.2
, pp. 10181-10185
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
38
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore, J. L. (1999) Animal mitochondrial genomes. Nucleic Acids Res. 27, 1767-1780.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
39
-
-
0037108325
-
The closest unicellular relatives of animals
-
Lang, B. F., O'Kelly, C., Nerad, T., Gray, M.W., and Burger, G. (2002) The closest unicellular relatives of animals. Curr. Biol. 12, 1773-1778.
-
(2002)
Curr. Biol.
, vol.12
, pp. 1773-1778
-
-
Lang, B.F.1
O'Kelly, C.2
Nerad, T.3
Gray, M.W.4
Burger, G.5
-
40
-
-
0030668042
-
The mystery of the rings: Structure and replication of mitochondrial genomes from higher plants
-
Backert S., Nielsen, B. L., and Börner T. (1997) The mystery of the rings: structure and replication of mitochondrial genomes from higher plants. Trends Plant Sci. 477-483.
-
(1997)
Trends Plant Sci.
, pp. 477-483
-
-
Backert, S.1
Nielsen, B.L.2
Börner, T.3
-
41
-
-
0032996560
-
Phylogeny of early land plants: Insights from genes and genomes
-
Qiu, Y.L., and Palmer, J. D. (1999) Phylogeny of early land plants: insights from genes and genomes. Trends Plant Sci. 4, 26-30.
-
(1999)
Trends Plant Sci.
, vol.4
, pp. 26-30
-
-
Qiu, Y.L.1
Palmer, J.D.2
-
42
-
-
18344398178
-
Genome structure and gene content in protist mitochondrial DNAs
-
Gray M. W., Lang, B. F., Cedergren, R., Golding, G. B., Lemieux, C., Sankoff, D., Turmel, M., Brossard, N., Delage, E., Littlejohn, T. G., et al. (1998) Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Res. 26, 865-878.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 865-878
-
-
Gray, M.W.1
Lang, B.F.2
Cedergren, R.3
Golding, G.B.4
Lemieux, C.5
Sankoff, D.6
Turmel, M.7
Brossard, N.8
Delage, E.9
Littlejohn, T.G.10
-
43
-
-
0026603433
-
Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences
-
Feagin, J. E., Werner, E., Gardner, M. J., Williamson, D. H., and Wilson, R. J. (1992) Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences. Nucleic Acids Res. 20, 879-887.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 879-887
-
-
Feagin, J.E.1
Werner, E.2
Gardner, M.J.3
Williamson, D.H.4
Wilson, R.J.5
-
44
-
-
0013086990
-
-
(Gesteland, R., Atkins, J., and Cech, T., eds), Cold Spring Harbor Press, Cold Spring Harbor, NY
-
Simpson, L. (1999) In RNA World (Gesteland, R., Atkins, J., and Cech, T., eds). pp. 585-608, Cold Spring Harbor Press, Cold Spring Harbor, NY.
-
(1999)
RNA World
, pp. 585-608
-
-
Simpson, L.1
-
45
-
-
0029870907
-
Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis
-
Bendich, A. J. (1996) Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis. J. Mol. Biol. 255, 564-588.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 564-588
-
-
Bendich, A.J.1
-
46
-
-
0035986910
-
Mitochondrial genome of the colorless green alga Polytomella parva: Two linear DNA molecules with homologous inverted repeat termini
-
Fan, J. and Lee, R. W. (2002) Mitochondrial genome of the colorless green alga Polytomella parva: two linear DNA molecules with homologous inverted repeat termini. Mol. Biol. Evol. 19, 999-1007.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 999-1007
-
-
Fan, J.1
Lee, R.W.2
-
47
-
-
0033605214
-
Mitochondrial genes are found on minicircle DNA molecules in the mesozoan animal Dicyema
-
Watanabe, K. I., Bessho, Y., Kawasaki, M., and Hori H. (1999) Mitochondrial genes are found on minicircle DNA molecules in the mesozoan animal Dicyema. J. Mol. Biol. 286, 645-650.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 645-650
-
-
Watanabe, K.I.1
Bessho, Y.2
Kawasaki, M.3
Hori, H.4
-
48
-
-
0037417915
-
Unique mitochondrial genome architecture in unicellular relatives of animals
-
Burger, G., Forget, L., Zhu, Y., Gray, M. W., and Lang, B. F. (2003) Unique mitochondrial genome architecture in unicellular relatives of animals. Proc. Natl. Acad. Sci. USA 100, 892-897.
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(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 892-897
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Burger, G.1
Forget, L.2
Zhu, Y.3
Gray, M.W.4
Lang, B.F.5
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