Crystal structure of GDP-mannose dehydrogenase: A key enzyme of alginate biosynthesis in P. aeruginosa

Biochemistry

Volumn 42, Issue 16, 2003, Pages 4658-4668

  Snook, Christopher F ^a   Tipton, Peter A ^a   Beamer, Lesa J ^a  

^a University of Missouri   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INTERSUBUNIT COMMUNICATION;

ANTIBIOTICS; BIOFILMS; BIOSYNTHESIS; CRYSTAL STRUCTURE; INTERFACES (MATERIALS); POLYPEPTIDES;

ENZYME KINETICS;

ALGINIC ACID; BACTERIAL ENZYME; DIMER; GUANOSINE DERIVATIVE; GUANOSINE DIPHOSPHATE MANNOSE DEHYDROGENASE; GUANOSINE DIPHOSPHATE MANNURONIC ACID; POLYPEPTIDE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE; UNCLASSIFIED DRUG; URIDINE DIPHOSPHATE GLUCOSE DEHYDROGENASE;

ANTIBIOTIC THERAPY; ARTICLE; BIOFILM; BIOSYNTHESIS; CATALYSIS; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; HOST; IMMUNE RESPONSE; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA;

ALGINATES; BINDING SITES; CARBOHYDRATE DEHYDROGENASES; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; HYDROGEN BONDING; LIGANDS; MODELS, CHEMICAL; MODELS, MOLECULAR; NAD; NUCLEOSIDE DIPHOSPHATE SUGARS; PSEUDOMONAS AERUGINOSA; URIDINE DIPHOSPHATE GLUCOSE DEHYDROGENASE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 0037472127     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi027328k     Document Type: Article

References (43)

1. Yu, H., and Head, N. E. (2002) Front. Biosci. 7, D442-57.
2. Pier, G. B. (1997) Behring Inst. Mitt. 350-60.
3. Hentzer, M., Teitzel, G. M., Balzer, G. J., Heydorn, A., Molin, S., Givskov, M., and Parsek, M. R. (2001) J. Bacteriol. 183, 5395-401.
4. Tatnell, P. J., Russell, N. J., and Gacesa, P. (1993) J. Gen. Microbiol. 139, 119-27.
5. Elloumi, N., Moreau, B., Aguiar, L., Jaziri, N., Sauvage, M., Hulen, C., and Capmau, M. L. (1992) Eur. J. Med. Chem. 27, 249-54.
6. Shankar, S., Ye, R. W., Schlictman, D., and Chakrabarty, A. M. (1995) Adv. Enzymol. RAMB. 70, 221-55.
7. Tavares, I. M., Leitao, J. H., Fialho, A. M., and Sa-Correia, I. (1999) Res. Microbiol. 150, 105-16.
8. Tabernero, L., Bochar, D. A., Rodwell, V. W., and Stauffacher, C. V. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 7167-71.
9. Barbosa, J. A., Sivaraman, J., Li, Y., Larocque, R., Matte, A., Schrag, J. D., and Cygler, M. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 1859-64.
10. Campbell, R. E., Mosimann, S. C., van De Rijn, I., Tanner, M. E., and Strynadka, N. C. (2000) Biochemistry 39, 7012-23.
11. Naught, L. E., Gilbert, S., Imhoff, R., Snook, C., Beamer, L., and Tipton, P. (2002) Biochemistry 41, 9637-45.
12. Roychoudhury, S., May, T. B., Gill, J. F., Singh, S. K., Feingold, D. S., and Chakrabarty, A. M. (1989) J. Biol. Chem. 264, 9380-5.
13. Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) J. Mol. Biol. 229, 105-24.
14. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-26.
15. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. D 55, 849-61.
16. Terwilliger, T. C. (2000) Acta Crystallogr. D 56, 965-72.
17. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-9.
18. Murshudov, G. N., Vagin, A. A., Lebedev, A., Wilson, K. S., and Dodson, E. J. (1999) Acta Crystallogr. D 55, 247-55.
19. Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Acta Crystallogr. D 57, 122-33.
20. No. 4, C. C. P. (1994) Acta Crystallogr. D 50, 760.
21. Kissinger, C. R., Gehlhaar, D. K., and Fogel, D. B. (1999) Acta Crystallogr. D 55, 484-91.
22. Laskowski, R. A., McArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-91.
23. Hooft, R. W., Vriend, G., Sander, C., and Abola, E. E. (1996) Nature 381, 272.
24. Vaguine, A. A., Richelle, J., and Wodak, S. J. (1999) Acta Crystallogr. D 55, 191-205.
25. Colovos, C., and Yeates, T. O. (1993) Protein Sci. 2, 1511-9.
26. Liang, J., Edelsbrunner, H., and Woodward, C. (1998) Protein Sci. 7, 1884-97.
27. Jones, S., and Thornton, J. M. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 13-20.
28. Lu, G. (2000) J. Appl. Crystallogr. 33, 176-83.
29. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-50.
30. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-10.
31. Kutzenko, A. S., Lamzin, V. S., and Popov, V. O. (1998) FEBS Lett. 423, 105-9.
32. Bennett, M. J., Schlunegger, M. P., and Eisenberg, D. (1995) Protein Sci. 4, 2455-68.
33. Roychoudhury, S., Chakrabarty, K., Ho, Y. K., and Chakrabarty, A. M. (1992) J. Biol. Chem. 267, 990-6.
34. Bottoms, C. A., Smith, P. E., and Tanner, J. J. (2002) Protein Sci. 11, 2125-37.
35. Bellamacina, C. R. (1996) FASEB J. 10, 1257-69.
36. Dougherty, B. A., and van de Rijn, I. (1993) J. Biol. Chem. 268, 7118-24.
37. Newcomer, M. E. (2002) Curr. Opin. Struct. Biol. 12, 48-53.
38. Schlunegger, M. P., Bennett, M. J., and Eisenberg, D. (1997) Adv. Protein Chem. 50, 61-122.
39. Davies, C., Heath, R. J., White, S. W., and Rock, C. O. (2000) Structure Fold. Des. 8, 185-95.
40. Kortemme, T., and Creighton, T. E. (1995) J. Mol. Biol. 253, 799-812.
41. Nakagawa, A., Hosoyama, T., Chubachi, K., Takahashi, S., Ohkubo, T., and Iyobe, S. (1997) J. Antibiot. (Tokyo) 50, 286-8.
42. Naught, L. E., and Tipton, P. A. (2001) Arch. Biochem. Biophys. 396, 111-8.
43. Regni, C., Tipton, P. A., and Beamer, L. J. (2002) Structure Fold. Des. 10, 269-79.