NMR structure of the cathelin-like domain of the protegrin-3 precursor

Biochemistry

Volumn 42, Issue 16, 2003, Pages 4669-4680

  Yang, Yinshan ^a   Sanchez, Jean Frédéric ^a   Strub, Marie Paule ^a   Brutscher, Bernhard ^b   Aumelas, André ^a,c  

^a CENTRE DE BIOCHIMIE STRUCTURALE   (France)

^b INSTITUT DE BIOLOGIE STRUCTURALE   (France)

^c UNIV MONTPELLIER   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; NUCLEAR MAGNETIC RESONANCE; PH EFFECTS; X RAY ANALYSIS;

ANTIBACTERIAL PEPTIDES;

PROTEINS;

AMIDE; CARBON 13; CATHELIN; CYSTATIN; NITROGEN 15; PEPTIDE; PROLINE; PROTEGRIN 3 PRECURSOR; PROTEIN PRECURSOR; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANTIBACTERIAL ACTIVITY; ARTICLE; BETA SHEET; ESCHERICHIA COLI; HYDROGEN BOND; ISOMERISM; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PH; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE; STRUCTURE ANALYSIS; X RAY ANALYSIS;

AMIDES; AMINO ACID SEQUENCE; ANIMALS; ANTIMICROBIAL CATIONIC PEPTIDES; CRYSTALLOGRAPHY, X-RAY; CYSTATINS; ISOMERISM; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN FOLDING; PROTEIN PRECURSORS; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; PROTONS; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; GALLUS GALLUS; MAMMALIA;

EID: 0037472117     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi027133c     Document Type: Article

References (52)

1. Zhao, C., Liu, L., and Lehrer, R. I. (1994) FEBS Lett. 346, 285-288.
2. Zanetti, M., Gennaro, R., and Romeo, D. (1995) FEBS Lett. 374, 1-5.
3. Storici, P., Tossi, A., Lenarcic, B., and Romeo, D. (1996) Eur. J. Biochem. 238, 769-776.
4. Scocchi, M., Wang, S., and Zanetti, M. (1997) FEBS Lett. 417, 311-315.
5. Wang, Y., Agerberth, B., and Johansson, J. (1998) J. Protein Chem. 17, 522-523.
6. Zanetti, M., Gennaro, R., Scocchi, M., and Skerlavaj, B. (2000) Adv. Exp. Med. Biol. 479, 203-218.
7. Gennaro, R., Scocchi, M., Merluzzi, L., and Zanetti, M. (1998) Biochim. Biophys. Acta 1425, 361-368.
8. Ramanathan, B., Davis, E. G., Ross, C. R., and Blecha, F. (2002) Microbes Infect. 4, 361-372.
9. Zaiou, M., and Gallo, R. L. (2002) J. Mol. Med. 80, 549-561.
10. Zarember, K. A., Katz, S. S., Tack, B. F., Doukhan, L., Weiss, J., and Elsbach, P. (2002) Infect. Immun. 70, 569-576.
11. Zhao, C., Ganz, T., and Lehrer, R. I. (1995) FEBS Lett. 368, 197-202.
12. Gudmundsson, G. H., Agerberth, B., Odeberg, J., Bergman, T., Olsson, B., and Salcedo, R. (1996) Eur. J. Biochem. 238, 325-332.
13. Zanetti, M., Litteri, L., Griffiths, G., Gennaro, R., and Romeo, D. (1991) J. Immunol. 146, 4295-4300.
14. Panyutich, A., Shi, J., Boutz, P. L., Zhao, C., and Ganz, T. (1997) Infect. Immun. 65, 978-985.
15. Gennaro, R., and Zanetti, M. (2000) Biopolymers 55, 31-49.
16. Sorensen, O. E., Follin, P., Johnsen, A. H., Calafat, J., Tjabringa, G. S., Hiemstra, P. S., and Borregaard, N. (2001) Blood 97, 3951-3959.
17. Verbanac, D., Zanetti, M., and Romeo, D. (1993) FEBS Lett. 317, 255-258.
18. Valore, E. V., Martin, E., Harwig, S. S., and Ganz, T. (1996) J. Clin. Invest. 97, 1624-1629.
19. Kokryakov, V. N., Harwig, S. S., Panyutich, E. A., Shevchenko, A. A., Aleshina, G. M., Shamova, O. V., Korneva, H. A., and Lehrer, R. I. (1993) FEBS Lett. 327, 231-236.
20. Aumelas, A., Mangoni, M., Roumestand, C., Chiche, L., Despaux, E., Grassy, G., Calas, B., and Chavanieu, A. (1996) Eur. J. Biochem. 237, 575-583.
21. Fahrer, R. L., Dieckmann, T., Harwig, S. S., Lehrer, R. I. Eisenberg, D., and Feigon, J. (1996) Chem. Biol. 3, 543-550.
22. Mirgorodskaya, O. A., Shevchenko, A. A., Abdalla, K. O., Chernushevich, I. V., Egorov, T. A., Musoliamov, A. X., Kokryakov, V. N., and Shamova, O. V. (1993) FEBS Lett. 330, 339-342.
23. Sanchez, J. F., Hoh, F., Strub, M. P., Aumelas, A., and Dumas, C. (2002) Structure 10, 1363-1370.
24. Sanchez, J. F., Wojcik, F., Yang, Y. S., Strub, M. P., Strub, J. M., Van Dorsselaer, A., Martin, M., Lehrer, R., Ganz, T., Chavanieu, A., Calas, B., and Aumelas, A. (2002) Biochemistry 41, 21-30.
25. Coligan, J. E., Dunn, B. M., Ploegh, H. L., Speicher, D. W., and Wingfield, P. T. (1995) Current Protocols in Protein Science, Vol. 1, John Wiley & Sons, New York.
26. Palmer, A. G. I., Cavanagh, J., Wright, P. E., and Rance, M. (1991) J. Magn. Reson. 93, 151-170.
27. Marion, D., Ikura, M., Tschudin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
28. Markley, J. L., Bax, A., Arata, Y., Hilbers, C. W., Kaptein, R., Sykes, B. D., Wright, P. E., and Wuthrich, K. (1998) Eur. J. Biochem. 256, 1-15.
29. Bax, A., and Grzesiek, S. (1993) Methodological Advances in Protein NMR, in NMR of Proteins (Clore, G. M., and Gronenborn, E., Ed.) pp 33-52, Macmillan, London.
30. Bax, A., and Pochapsky, S. (1992) J. Magn. Reson. 99, 638-644.
31. Grzesiek, S., and Bax, A. (1993) J. Am. Chem. Soc. 115, 12593-12594.
32. Shaka, A. J., Lee, C. J., and Pines, A. (1988) J. Magn. Reson. 77, 274-293.
33. Skinner, T. E., and Bendall, M. R. (1997) J. Magn. Reson. 124, 474-478.
34. Rice, L. M., and Brunger, A. T. (1994) Proteins 19, 277-290.
35. Nilges, M., Clore, G. M., and Gronenborn, A. M. (1988) FEBS Lett. 229, 317-324.
36. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486.
37. Frishman, D., and Argos, P. (1995) Proteins 23, 566-579.
38. Bode, W., Engh, R., Musil, D., Thiele, U., Huber, R., Karshikov, A., Brzin, J., Kos, J., and Turk, V. (1988) EMBO J. 7, 2593-2599.
39. Dieckmann, T., Mitschang, L., Hofmann, M., Kos, J., Turk, V., Auerswald, E. A., Jaenicke, R., and Oschkinat, H. (1993) J. Mol. Biol. 234, 1048-1059.
40. Engh, R. A., Dieckmann, T., Bode, W., Auerswald, E. A., Turk, V., Huber, R., and Oschkinat, H. (1993) J. Mol. Biol. 234, 1060-1069.
41. Fisher, G. (2000) Chem. Soc. Rev. 29, 119-127.
42. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons, New York.
43. Wishart, D. S., and Case, D. A. (2001) Methods Enzymol. 338, 3-34.
44. Ritonja, A., Kopitar, M., Jerala, R., and Turk, V. (1989) FEBS Lett. 255, 211-214.
45. Nagata, K., Kudo, N., Abe, K., Arai, S., and Tanokura, M. (2000) Biochemistry 39, 14753-14760.
46. Martin, J. R., Craven, C. J., Jerala, R., Kroon-Zitko, L., Zerovnik, E., Turk, V., and Waltho, J. P. (1995) J. Mol. Biol. 246, 331-343.
47. Stubbs, M. T., Laber, B., Bode, W., Huber, R., Jerala, R., Lenarcic, B., and Turk, V. (1990) EMBO J. 9, 1939-1947.
48. Janowski, R., Kozak, M., Jankowska, E., Grzonka, Z., Grubb, A., Abrahamson, M., and Jaskolski, M. (2001) Nat. Struct. Biol. 8, 316-320.
49. Ekiel, I., and Abrahamson, M. (1996) J. Biol. Chem. 271, 1314-1321.
50. Staniforth, R. A., Giannini, S., Higgins, L. D., Conroy, M. J., Hounslow, A. M., Jerala, R., Craven, C. J., and Waltho, J. P. (2001) EMBO J. 20, 4774-4781.
51. Liu, Y., and Eisenberg, D. (2002) Protein Sci. 11, 1285-1299.
52. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.