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0012223172
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To test these restrictions we ran the same jobs without constraints and found that they do not affect the final structure.
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27
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0012221059
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oc ∼ 3.01 Å very close to model 2c. The starting structure for leucine was from CHARMM minimization.
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29
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0012273929
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note
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The crystal structure of cytochrome c peroxidase, ref 26, has three water molecules interacting with His52, Arg48, and Trp51. Interestingly, cytochrome c peroxidase in the presence of CO, CN, NO, and F retains two water molecules that interact with the distal amino acids and with the adducted ligand atoms.
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note
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ε of arginine and the final structure was similar to the model 5b.
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A similar result is observed in cytochrome c peroxidase, where the distal Arg48 moves in or out to interact with the berne-bound ligand, see ref 28.
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35
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