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Volumn 107, Issue 8, 2003, Pages 1884-1892

A density functional theory study of conformers in the ferrous CO complex of horseradish peroxidase with distinct Fe-C-O configurations

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DEPROTONATION;

EID: 0037468218     PISSN: 10895647     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp022018x     Document Type: Article
Times cited : (9)

References (48)
  • 10
    • 4243553426 scopus 로고
    • Becke, A. D. Phys. Rev. A 1988, 38, 3098-3100. Becke, A. D. J. Chem. Phys. 1993, 98, 1372-1377. Becke, A. D. J. Chem. Phys. 1993, 98, 5648-5652.
    • (1988) Phys. Rev. A , vol.38 , pp. 3098-3100
    • Becke, A.D.1
  • 11
    • 34250817103 scopus 로고
    • Becke, A. D. Phys. Rev. A 1988, 38, 3098-3100. Becke, A. D. J. Chem. Phys. 1993, 98, 1372-1377. Becke, A. D. J. Chem. Phys. 1993, 98, 5648-5652.
    • (1993) J. Chem. Phys. , vol.98 , pp. 1372-1377
    • Becke, A.D.1
  • 12
    • 0000189651 scopus 로고
    • Becke, A. D. Phys. Rev. A 1988, 38, 3098-3100. Becke, A. D. J. Chem. Phys. 1993, 98, 1372-1377. Becke, A. D. J. Chem. Phys. 1993, 98, 5648-5652.
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 15
    • 0033963034 scopus 로고    scopus 로고
    • Molden: A pre-and post-processing program for molecular and electronic structures
    • Schaftenaar, G.; Noordik, J. H. Molden: a pre-and post-processing program for molecular and electronic structures; J. Comput.-Aided Mol. Des. 2000, 14, 123-134.
    • (2000) J. Comput.-Aided Mol. Des. , vol.14 , pp. 123-134
    • Schaftenaar, G.1    Noordik, J.H.2
  • 26
    • 0012223172 scopus 로고    scopus 로고
    • note
    • To test these restrictions we ran the same jobs without constraints and found that they do not affect the final structure.
  • 27
    • 0012221059 scopus 로고    scopus 로고
    • note
    • oc ∼ 3.01 Å very close to model 2c. The starting structure for leucine was from CHARMM minimization.
  • 29
    • 0012273929 scopus 로고    scopus 로고
    • note
    • The crystal structure of cytochrome c peroxidase, ref 26, has three water molecules interacting with His52, Arg48, and Trp51. Interestingly, cytochrome c peroxidase in the presence of CO, CN, NO, and F retains two water molecules that interact with the distal amino acids and with the adducted ligand atoms.
  • 31
    • 0012319195 scopus 로고    scopus 로고
    • note
    • ε of arginine and the final structure was similar to the model 5b.
  • 34
    • 0012313475 scopus 로고    scopus 로고
    • note
    • A similar result is observed in cytochrome c peroxidase, where the distal Arg48 moves in or out to interact with the berne-bound ligand, see ref 28.
  • 35
    • 0029986887 scopus 로고    scopus 로고
    • MD simulations mad crystallographic studies of Mb-CO show that the distal histidine, His64, is more flexible than in HRPC-CO and is the origin of the A states in Mb. See references, Yang, F.; Phillips, G. N., Jr. J. Mol. Biol. 1996, 256, 762-774. Schulze, B.; Evanseck, J. D. J. Am. Chem. Soc. 1999, 121, 6444-6454.
    • (1996) J. Mol. Biol. , vol.256 , pp. 762-774
    • Yang, F.1    Phillips G.N., Jr.2
  • 36
    • 0033554018 scopus 로고    scopus 로고
    • MD simulations mad crystallographic studies of Mb-CO show that the distal histidine, His64, is more flexible than in HRPC-CO and is the origin of the A states in Mb. See references, Yang, F.; Phillips, G. N., Jr. J. Mol. Biol. 1996, 256, 762-774. Schulze, B.; Evanseck, J. D. J. Am. Chem. Soc. 1999, 121, 6444-6454.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 6444-6454
    • Schulze, B.1    Evanseck, J.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.