메뉴 건너뛰기




Volumn 222, Issue 2, 2003, Pages 139-149

Statistics of trinucleotides in coding sequences and evolution

Author keywords

Coding sequence; Codon space; Codon usage; Evolution; Principal component analysis; Randomness; Statistics of Trinucleotides; Theoretical amino acid frequency; tRNA abundance

Indexed keywords

TRINUCLEOTIDE;

EID: 0037460099     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-5193(03)00021-3     Document Type: Review
Times cited : (8)

References (25)
  • 1
    • 0033529862 scopus 로고    scopus 로고
    • Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
    • Campbell A., Mrázek J., Karlin S. Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 96:1999;9184-9189.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9184-9189
    • Campbell, A.1    Mrázek, J.2    Karlin, S.3
  • 2
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong, H, Nilsson L., Kurland C.-G. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260:1996;649-663.
    • (1996) J. Mol. Biol. , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.-G.3
  • 3
    • 0020480512 scopus 로고
    • Recognition of protein coding regions in DNA sequences
    • Fickett J.-W. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10:1982;5303-5318.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 5303-5318
    • Fickett, J.-W.1
  • 4
    • 0019188794 scopus 로고
    • Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type
    • Grantham R., Gautier C., Gouy M. Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type. Nucleic Acids Res. 8:1980;1893-1912.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 1893-1912
    • Grantham, R.1    Gautier, C.2    Gouy, M.3
  • 7
    • 0028850576 scopus 로고
    • Distinctive sequence features in protein coding genic non-coding, and intergenic human DNA
    • Guigó R., Fickett J.-W. Distinctive sequence features in protein coding genic non-coding, and intergenic human DNA. J. Mol. Biol. 253:1995;51-60.
    • (1995) J. Mol. Biol. , vol.253 , pp. 51-60
    • Guigó, R.1    Fickett, J.-W.2
  • 8
    • 0025056565 scopus 로고
    • Doublet preference and gene evolution
    • Hanai R., Wada A. Doublet preference and gene evolution. J. Mol. Evol. 30:1990;109-115.
    • (1990) J. Mol. Evol. , vol.30 , pp. 109-115
    • Hanai, R.1    Wada, A.2
  • 9
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J. Mol. Biol. 146:1981;1-21.
    • (1981) J. Mol. Biol. , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 10
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    • Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. a proposal for a synonymous codon choice that is optimal for the E. coli translational system J. Mol. Biol. 151:1981;389-409.
    • (1981) J. Mol. Biol. , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 11
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes: Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs
    • Ikemura T. Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs J. Mol. Biol. 158:1982;573-597.
    • (1982) J. Mol. Biol. , vol.158 , pp. 573-597
    • Ikemura, T.1
  • 12
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium, 2001. Initial sequencing and analysis of the human genome, Nature 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 13
    • 73049131457 scopus 로고
    • Enzymatic synthesis of deoxyribonucleic acid
    • Josse J., Kaiser A.D., Kornberg A. Enzymatic synthesis of deoxyribonucleic acid. J. Biol. Chem. 236:1961;864-875.
    • (1961) J. Biol. Chem. , vol.236 , pp. 864-875
    • Josse, J.1    Kaiser, A.D.2    Kornberg, A.3
  • 14
    • 0017815152 scopus 로고
    • Codons and nearest-neighbor nucleotide pairs in mammalian messenger RNA
    • Jukes T.-H. Codons and nearest-neighbor nucleotide pairs in mammalian messenger RNA. J. Mol. Evol. 11:1978;121-127.
    • (1978) J. Mol. Evol. , vol.11 , pp. 121-127
    • Jukes, T.-H.1
  • 15
    • 0016842629 scopus 로고
    • Amino acid compositions of proteins: Selection against the genetic code
    • Jukes T.-H., Holmquist R., Moise H. Amino acid compositions of proteins. selection against the genetic code Science. 189:1975;50-51.
    • (1975) Science , vol.189 , pp. 50-51
    • Jukes, T.-H.1    Holmquist, R.2    Moise, H.3
  • 16
    • 0031720281 scopus 로고    scopus 로고
    • Codon usages in different gene classes of the Escherichia coli genome
    • Karlin S., Mrázek J., Campbell A.-M. Codon usages in different gene classes of the Escherichia coli genome. Molec. Microbiol. 29:1998;1341-1355.
    • (1998) Molec. Microbiol. , vol.29 , pp. 1341-1355
    • Karlin, S.1    Mrázek, J.2    Campbell, A.-M.3
  • 17
    • 0014680905 scopus 로고
    • Non-Darwinian evolution
    • King J.-L., Jukes T.-H. Non-Darwinian evolution. Science. 164:1969;788-798.
    • (1969) Science , vol.164 , pp. 788-798
    • King, J.-L.1    Jukes, T.-H.2
  • 19
    • 0345346377 scopus 로고    scopus 로고
    • Codon usage tabulated from the international DNA sequence databases: Status for the year 2000
    • Nakamura, Y., Gojobori, T., Ikemura, T., 2000. Codon usage tabulated from the international DNA sequence databases: status for the year 2000. Nucl. Acids Res.28, 292 http://www.kazusa.or.jp/codon/ (Source: GenBank Release 123.0 [15 April 2001]).
    • (2000) Nucl. Acids Res. , vol.28 , pp. 292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 20
    • 0021999386 scopus 로고
    • A three-dimensional representation for base composition of protein-coding DNA sequences
    • Rowe G.-W. A three-dimensional representation for base composition of protein-coding DNA sequences. J. theor. Biol. 112:1985;433-444.
    • (1985) J. theor. Biol. , vol.112 , pp. 433-444
    • Rowe, G.-W.1
  • 24
    • 0019453879 scopus 로고
    • Periodic correlations in DNA sequences and evidence suggesting their evolutionary origin in a commaless genetic code
    • Shepherd J.-C.-W. Periodic correlations in DNA sequences and evidence suggesting their evolutionary origin in a commaless genetic code. J. Mol. Evol. 17:1981;94-102.
    • (1981) J. Mol. Evol. , vol.17 , pp. 94-102
    • Shepherd, J.-C.-W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.