Self-consistent determination of the transition state for protein folding: Application to a fibronectin type III domain

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 2, 2003, Pages 394-399

  Paci, Emanuele ^a   Clarke, Jane ^b   Steward, Annette ^b   Vendruscolo, Michele ^b   Karplus, Martin ^c,d  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c HARVARD UNIVERSITY   (United States)

^d UNIVERSITÉ LOUIS PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

FIBRONECTIN;

ARTICLE; MOLECULAR DYNAMICS; PHASE TRANSITION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN ENGINEERING; PROTEIN FOLDING; SIMULATION; THEORY;

FIBRONECTINS; PROTEIN FOLDING;

EID: 0037457892     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.232704999     Document Type: Article

References (22)

1. Fersht, A. R. (1999) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysts and Protein Folding (Freeman, New York).
2. Vendruscolo, M., Paci, E., Dobson, C. M. Karplus, M. (2001) Nature 409, 641-645.
3. Paci, E., Vendruscolo, M., Dobson, C. M. & Karplus, M. (2002) J. Mol. Biol. 324, 151-163.
4. Vendruscolo, M., Dokholyan, N. V., Paci, E. & Karplus, M. (2002) Phys. Rev. E 65, 061910.
5. Leahy, D. J., Hendrickson, W. A., Aukhil, I. & Erickson, H. P. (1992) Science 258, 987-991.
6. Hamill, S. J., Steward, A. & Clarke, J. (2000) J. Mol. Biol. 297, 165-178.
7. Hamill, S. J., Meekhof, A. E. & Clarke, J. (1998) Biochemistry 37, 8071-8079.
8. Clarke, J., Hamill, S. J. & Johnson. C. M. (1997) J. Mol. Biol. 270, 771-778.
9. Fowler, S. B. & Clarke, J. (2001) Structure (London) 9, 355-366.
10. Paci, E., Vendruscolo, M. & Karplus, M. (2002) Proteins 47, 379-392.
11. Cota, E., Hamill, S. J., Fowler, S. B. & Clarke, J. (2000) J. Mol. Biol. 302, 713-725.
12. Paci, E., Vendruscolo, M. & Karplus, M. (2002) Biophys. J. 83, 3032-3038.
13. Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S. & Karplus, M. (1983) J. Comp. Chem. 4, 187-217.
14. Neria, E., Fischer, S. & Karplus, M. (1996) J. Chem. Phys. 105, 1902-1921.
15. Lazaridis, T. & Karplus, M. (1999) Proteins 35, 133-152.
16. Chiti, F., Taddei, N., White, P. M., Elucciantini, M., Magherini, F., Stefani, M. & Dobson, C. M. (1999) Nat. Struct. Biol. 6, 1005-1009.
17. Tanford, C. (1970) Adv. Protein Chem. 24, 1-95.
18. Temström, T., Mayor, U., Akke, M. & Oliveberg, M. (1999) Proc. Natl. Acad. Sci. USA 96, 14854-14859.
19. Hemmingsen, J. M., Gernert, K. M., Richardson, J. S. & Richardson, D. C. (1994) Protein Sci. 3, 1927-1937.
20. Chothia, C., Boswell, D. R. & Lesk, A. M. (1988) EMBO J. 7, 3745-3755.
21. Kabsch, W. & Sander, C. (1983) Biopolymers 22, 2577-2637.
22. Koradi, R., Billeter, M. & Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.