High-fidelity in vivo replication of DNA base shape mimics without Watson-Crick hydrogen bonds

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 8, 2003, Pages 4469-4473

  Delaney, James C ^a   Henderson, Paul T ^a,c   Helquist, Sandra A ^b   Morales, Juan C ^b   Essigmann, John M ^a   Kool, Eric T ^b  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b STANFORD UNIVERSITY   (United States)

^c LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

Difluorotoluene; Isostere; Mutagenesis; Replication bypass

Indexed keywords

ADENINE; DNA BASE; THYMINE;

ARTICLE; BACTERIAL CELL; BACTERIAL GENOME; BACTERIOPHAGE; BASE MISPAIRING; BASE PAIRING; CELL ACTIVITY; DNA DAMAGE; DNA REPLICATION; DNA VECTOR; ESCHERICHIA COLI; GENE INSERTION; GENETIC ANALYSIS; GENETIC TRANSFECTION; HYDROGEN BOND; IN VIVO STUDY; MOLECULAR MIMICRY; MOLECULAR RECOGNITION; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; STEREOSPECIFICITY;

BASE PAIRING; BASE SEQUENCE; DNA; DNA REPAIR; DNA REPLICATION; DNA, BACTERIAL; DNA-DIRECTED DNA POLYMERASE; ELECTROSTATICS; ESCHERICHIA COLI; HYDROGEN BONDING; MODELS, MOLECULAR; MOLECULAR MIMICRY; MOLECULAR STRUCTURE; MUTAGENESIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0037447258     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0837277100     Document Type: Article

References (38)

1. Goodman, M. F. (1997) Proc. Natl. Acad. Sci. USA 94, 10493-10495.
2. Kunkel, T. A. & Bebenek, K. (2000) Annu. Rev. Biochem. 69, 497-529.
3. Kool, E. T. (1998) Biopolymers 48, 3-17.
4. Moran, S., Ren, R. X.-F., Rumney, S., IV, & Kool, E. T. (1997) J. Am. Chem. Soc. 119, 2056-2057.
5. Moran, S., Ren, R., X.-F. & Kool, E. T. (1997) Proc. Natl. Acad. Sci. USA 94, 10506-10511.
6. McNees, A. G., O'Donnell, M., Horton, P. H., Kim, H. Y., Kim, S. J., Harris, C. M., Harris, T. M. & Lloyd, R. S. (1997) J. Biol. Chem. 272, 33211-33219.
7. Schweitzer, B. A. & Kool, E. T. (1994) J. Org. Chem. 59, 7238-7242.
8. Guckian, K. M. & Kool, E. T. (1998) Angew. Chem. Int. Ed. Engl. 36, 2825-2828.
9. Schweitzer, B. A. & Kool, E. T. (1995) J. Am. Chem. Soc. 117, 1863-1872.
10. Morales, J. C. & Kool, E. T. (1999) J. Am. Chem. Soc. 121, 2323-2324.
11. Kool, E. T., Morales, J. C. & Guckian, K. M. (2000) Angew. Chem. Int. Ed. Engl. 39, 990-1009.
12. Kool, E. T. (2002) Annu. Rev. Biochem. 71, 191-219.
13. Ren, R. X.-F., Chaudhuri, N. C., Paris, P. L., Rumney, S., IV, & Kool, E. T. (1996) J. Am. Chem. Soc. 118, 7671-7678.
14. Horsfall, M. J., Borden, A. & Lawrence, C. W. (1997) J. Bacteriol. 179, 2835-2839.
15. Delaney, J. C. & Essigmann, J. M. (1999) Chem. Biol. 6, 743-753.
16. Henderson, P. T., Delaney, J. C., Gu, F., Tannenbaum, S. R. & Essigmann, J. M. (2002) Biochemistry 41, 914-921.
17. Goodman, M. F., Creighton, S., Bloom, L. B. & Petruska, J. (1993) Crit. Rev. Biochem. Mol. Biol. 28, 83-126.
18. Fink, S. P., Reddy, G. R. & Marnett, L. J. (1997) Proc. Natl. Acad. Sci. USA 94, 8652-8657.
19. Lawrence, C. W., Borden, A., Banerjee, S. K. & LeClerc, J. E. (1990) Nucleic Acids Res. 18, 2153-2157.
20. Latham, G. J., Zhou, L., Harris, C. M., Harris, T. M. & Lloyd, R. S. (1993) J. Biol. Chem. 268, 23427-23434.
21. Hanrahan, C. J., Bacolod, M. D., Vyas, R. R., Liu, T., Geacintov, N. E., Loechler, E. L. & Basu, A. K. (1997) Chem. Res. Toxicol. 10, 369-377.
22. Reuven, N. B., Tomer, G. & Livneh, Z. (1998) Mol. Cell 2, 191-199.
23. Ramos, L. A., Sayer, J. M., Yagi, H., Shah, J. H., Dipple, A. & Jerina, D. M. (2001) Chem. Res. Toxicol. 14, 1082-1089.
24. Yarema, K. J., Lippard, S. J. & Essigmann, J. M. (1995) Nucleic Acids Res. 23, 4066-4072.
25. Takeshita, M., Chang, C. N., Johnson, F., Will, S. & Grollman, A. P. (1987) J. Biol. Chem. 262, 10171-10179.
26. Goodman, M. F. (2002) Annu. Rev. Biochem. 71, 17-50.
27. Morales, J. C. & Kool, E. T. (2000) Biochemistry 39, 12979-12988.
28. Morales, J. C. & Kool, E. T. (2000) J. Am. Chem. Soc. 122, 1001-1007.
29. Friedberg, E. C., Walker, G. C. & Siede, W. (1995) in DNA Repair and Mutagenesis (Am. Soc. Microbiol., Washington, DC).
30. Pham, P., Rangarajan, S., Woodgate, R. & Goodman, M. F. (2001) Proc. Natl. Acad. Sci. USA 98, 8350-8354.
31. Rangarajan, S., Woodgate, R. & Goodman, M. F. (1999) Proc. Natl. Acad. Sci. USA 96, 9224-9229.
32. Opperman, T., Murli, S., Smith, B. T. & Walker, G. C. (1999) Proc. Natl. Acad. Sci. USA 96, 9218-9223.
33. Tang, M., Pham, P., Shen, X., Taylor, J. S., O'Donnell, M., Woodgate, R. & Goodman, M. F. (2000) Nature 404, 1014-1018.
34. Kornberg, A. & Baker, T. A. (1992) in DNA Replication (Freeman, New York).
35. Becherel, O. J. & Fuchs, R. P. (2001) Proc. Natl. Acad. Sci. USA 98, 8566-8571.
36. Napolitano, R., Janel-Bintz, R., Wagner, J. & Fuchs, R. P. (2000) EMBO J. 19, 6259-6265.
37. Morales, J. C. & Kool, E. T. (2000) Biochemistry 39, 2626-2632.
38. Schofield, M. J., Brownewell, F. E., Nayak, S., Du, C., Kool, E. T. & Hsieh, P. (2001) J. Biol. Chem. 276, 45505-45508.