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Volumn 31, Issue 6, 2003, Pages 1735-1743

An NMR study on the interaction of Escherichia coli Dinl with RecA-ssDNA complexes

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE DERIVATIVE; BACTERIAL DNA; BACTERIAL PROTEIN; ESCHERICHIA COLI PROTEIN; GENE PRODUCT; PROTEIN DINI; PROTEINASE; RECA PROTEIN; REPRESSOR PROTEIN; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

EID: 0037444071     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg256     Document Type: Review
Times cited : (21)

References (46)
  • 1
    • 0017037398 scopus 로고
    • Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli
    • Witkin,E.M. (1976) Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. Bacteriol. Rev., 40, 869-907.
    • (1976) Bacteriol. Rev. , vol.40 , pp. 869-907
    • Witkin, E.M.1
  • 2
    • 0020316054 scopus 로고
    • The SOS regulatory system of Escherichia coli
    • Little,J.W. and Mount,D.W. (1982) The SOS regulatory system of Escherichia coli. Cell, 29, 11-22.
    • (1982) Cell , vol.29 , pp. 11-22
    • Little, J.W.1    Mount, D.W.2
  • 3
    • 0021320685 scopus 로고
    • Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli
    • Walker,G.C. (1994) Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol. Rev., 48, 60-93.
    • (1994) Microbiol. Rev. , vol.48 , pp. 60-93
    • Walker, G.C.1
  • 4
    • 0001863363 scopus 로고
    • SOS responses and DNA damage tolerance in Prokaryotes
    • ASM Press, Washington, DC
    • Friedberg,E.G., Walker,G.C. and Siede,W. (1995) SOS responses and DNA damage tolerance in Prokaryotes. In DNA Repair and Mutagenesis. ASM Press, Washington, DC, pp. 407-464.
    • (1995) DNA Repair and Mutagenesis , pp. 407-464
    • Friedberg, E.G.1    Walker, G.C.2    Siede, W.3
  • 5
    • 0342580269 scopus 로고
    • Escherichia coli recA gene product inactivates phage λ repressor
    • Roberts,J.W., Roberts,C.W. and Craig,N.L. (1978) Escherichia coli recA gene product inactivates phage λ repressor. Proc. Natl Acad. Sci. USA 75, 4714-4718.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4714-4718
    • Roberts, J.W.1    Roberts, C.W.2    Craig, N.L.3
  • 6
    • 0018904882 scopus 로고
    • E. coli recA protein-directed cleavage of phage λ repressor requires polynucleotide
    • Craig,N.L. and Roberts,J.W. (1980) E. coli recA protein-directed cleavage of phage λ repressor requires polynucleotide. Nature, 283, 26-30.
    • (1980) Nature , vol.283 , pp. 26-30
    • Craig, N.L.1    Roberts, J.W.2
  • 8
    • 0032715175 scopus 로고    scopus 로고
    • Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
    • Kuzminov,A. (1999) Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol. Mol. Biol. Rev., 63, 751-813.
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 751-813
    • Kuzminov, A.1
  • 9
    • 0034090729 scopus 로고    scopus 로고
    • Analysis of Escherichia coli RecA interactions with LexA, lambda CI and UmuD by site-directed mutagenesis of recA
    • Mustard,J.A. and Little,J.W. (2000) Analysis of Escherichia coli RecA interactions with LexA, lambda CI and UmuD by site-directed mutagenesis of recA. J. Bacteriol., 182, 1659-1670.
    • (2000) J. Bacteriol. , vol.182 , pp. 1659-1670
    • Mustard, J.A.1    Little, J.W.2
  • 11
    • 0343188817 scopus 로고
    • Autodigestion of lexA and phage lambda repressors
    • Little,J.W. (1984) Autodigestion of lexA and phage lambda repressors. Proc. Natl Acad. Sci. USA, 81, 1375-1379.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 1375-1379
    • Little, J.W.1
  • 13
  • 14
    • 0346660225 scopus 로고
    • Initiation of general recombination catalysed in vitro by the recA protein of Escherichia coli
    • McEntee,K., Weinstock,G.M. and Lehman,I.R. (1979) Initiation of general recombination catalysed in vitro by the recA protein of Escherichia coli. Proc. Natl Acad. Sci. USA, 76, 2615-2619.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 2615-2619
    • McEntee, K.1    Weinstock, G.M.2    Lehman, I.R.3
  • 15
    • 0021337860 scopus 로고
    • Role of RecA protein spiral filaments in genetic recombination
    • Howard-Flanders,P., West,S.C. and Stasiak,A. (1984) Role of RecA protein spiral filaments in genetic recombination. Nature, 309, 215-220.
    • (1984) Nature , vol.309 , pp. 215-220
    • Howard-Flanders, P.1    West, S.C.2    Stasiak, A.3
  • 16
    • 0026500416 scopus 로고
    • The structure of the E. coli recA protein monomer and polymer
    • Story,R.M., Weber,I. and Steitz,T.A. (1992) The structure of the E. coli recA protein monomer and polymer. Nature, 355, 318-325.
    • (1992) Nature , vol.355 , pp. 318-325
    • Story, R.M.1    Weber, I.2    Steitz, T.A.3
  • 17
    • 0026584599 scopus 로고
    • Structure of the recA protein-ADP complex
    • Story,R.M. and Steitz,T.A. (1992) Structure of the recA protein-ADP complex. Nature, 355, 374-376.
    • (1992) Nature , vol.355 , pp. 374-376
    • Story, R.M.1    Steitz, T.A.2
  • 18
    • 0021104403 scopus 로고
    • The SOS regulatory system: Control of its state by the level of RecA protease
    • Little, J.W. (1983) The SOS regulatory system: control of its state by the level of RecA protease. J. Mol. Biol., 167, 791-808.
    • (1983) J. Mol. Biol. , vol.167 , pp. 791-808
    • Little, J.W.1
  • 19
    • 0029997791 scopus 로고    scopus 로고
    • Multicopy suppressors of the cold-sensitive phenotype of the pcsA68 (dinD68) mutation in Escherichia coli
    • Yasuda,T., Nagata,T and Ohmori,H. (1996) Multicopy suppressors of the cold-sensitive phenotype of the pcsA68 (dinD68) mutation in Escherichia coli. J. Bacteriol., 178, 3854-3859.
    • (1996) J. Bacteriol. , vol.178 , pp. 3854-3859
    • Yasuda, T.1    Nagata, T.2    Ohmori, H.3
  • 20
    • 0032101713 scopus 로고    scopus 로고
    • Inhibition of Escherichia coli RecA coprotease activities by DinI
    • Yasuda,T., Morimatsu,K., Horii,T., Nagata,T. and Ohmori,H. (1998) Inhibition of Escherichia coli RecA coprotease activities by DinI. EMBO J., 17, 3207-3216.
    • (1998) EMBO J. , vol.17 , pp. 3207-3216
    • Yasuda, T.1    Morimatsu, K.2    Horii, T.3    Nagata, T.4    Ohmori, H.5
  • 21
    • 0034486021 scopus 로고    scopus 로고
    • Solution structure of DinI provides insight into its mode of RecA inactivation
    • Ramirez, B.E., Voloshin,O.N., Camerini-Otero,R.D. and Bax,A. (2000) Solution structure of DinI provides insight into its mode of RecA inactivation. Protein Sci., 11, 2161-2169.
    • (2000) Protein Sci. , vol.11 , pp. 2161-2169
    • Ramirez, B.E.1    Voloshin, O.N.2    Camerini-Otero, R.D.3    Bax, A.4
  • 22
    • 0035283191 scopus 로고    scopus 로고
    • Physical interactions between DinI and RecA nucleoprotein filament for the regulation of SOS mutagenisis
    • Yasuda,T., Morimatsu,K., Kato,R., Usukura,J., Takahashi,M. and Ohmori,H. (2001) Physical interactions between DinI and RecA nucleoprotein filament for the regulation of SOS mutagenisis. EMBO J., 20, 1192-1202.
    • (2001) EMBO J. , vol.20 , pp. 1192-1202
    • Yasuda, T.1    Morimatsu, K.2    Kato, R.3    Usukura, J.4    Takahashi, M.5    Ohmori, H.6
  • 23
    • 0035112201 scopus 로고    scopus 로고
    • A model for the abrogation of the SOS response by an SOS protein: A negatively charged helix in DinI mimics DNA in its interaction with RecA
    • Voloshin,O.N., Ramirez,B.E., Bax,A. and Camerini-Otero,R.D. (2001) A model for the abrogation of the SOS response by an SOS protein: a negatively charged helix in DinI mimics DNA in its interaction with RecA. Genes Dev., 15, 415-427.
    • (2001) Genes Dev. , vol.15 , pp. 415-427
    • Voloshin, O.N.1    Ramirez, B.E.2    Bax, A.3    Camerini-Otero, R.D.4
  • 24
    • 0030998268 scopus 로고    scopus 로고
    • An extended DNA structure through deoxyribose-base stacking induced by RecA protein
    • Nishinaka,T., Ito,Y., Yokoyama,S. and Shibata,T. (1997) An extended DNA structure through deoxyribose-base stacking induced by RecA protein. Proc. Natl Acad. Sci. USA, 94, 6623-6628.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6623-6628
    • Nishinaka, T.1    Ito, Y.2    Yokoyama, S.3    Shibata, T.4
  • 25
    • 0019442266 scopus 로고
    • Homologous pairing in genetic recombination. Purification and characterization of Escherichia coli recA protein
    • Shibata,T., Cunningham,R.P. and Radding,C.M. (1981) Homologous pairing in genetic recombination. Purification and characterization of Escherichia coli recA protein. J. Biol. Chem., 256, 7557-7564.
    • (1981) J. Biol. Chem. , vol.256 , pp. 7557-7564
    • Shibata, T.1    Cunningham, R.P.2    Radding, C.M.3
  • 26
    • 0020971310 scopus 로고
    • Purification of recA protein from Escherichia coli
    • Shibata,T., Osber,L. and Radding,C.M. (1983) Purification of recA protein from Escherichia coli. Methods Enzymol., 100, 197-209.
    • (1983) Methods Enzymol. , vol.100 , pp. 197-209
    • Shibata, T.1    Osber, L.2    Radding, C.M.3
  • 27
    • 0030780649 scopus 로고    scopus 로고
    • Local folding of the N-terminal domain of Escherichia coli RecA controls protein-protein interaction
    • Masui,R., Mikawa,T. and Kuramitsu,S. (1997) Local folding of the N-terminal domain of Escherichia coli RecA controls protein-protein interaction. J. Biol. Chem., 272, 27707-27715.
    • (1997) J. Biol. Chem. , vol.272 , pp. 27707-27715
    • Masui, R.1    Mikawa, T.2    Kuramitsu, S.3
  • 28
    • 0028980994 scopus 로고
    • N-terminal 33 amino acid residues of Escherichia coli RecA protein contribute to its self-assembly
    • Mikawa,T., Masui,R., Ogawa,T., Ogawa,H. and Kuramitsu,S. (1995) N-terminal 33 amino acid residues of Escherichia coli RecA protein contribute to its self-assembly. J. Mol. Biol., 250, 471-483.
    • (1995) J. Mol. Biol. , vol.250 , pp. 471-483
    • Mikawa, T.1    Masui, R.2    Ogawa, T.3    Ogawa, H.4    Kuramitsu, S.5
  • 29
    • 0030664070 scopus 로고    scopus 로고
    • An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing
    • Aihara,H., Ito,Y., Kurumizaka,H., Terada,T., Yokohaya,S. and Shibata,T. (1997) An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing. J. Mol. Biol., 274, 213-221.
    • (1997) J. Mol. Biol. , vol.274 , pp. 213-221
    • Aihara, H.1    Ito, Y.2    Kurumizaka, H.3    Terada, T.4    Yokohaya, S.5    Shibata, T.6
  • 30
    • 0002546906 scopus 로고
    • Reconstruction of phase sensitive 2D NMR spectra by maximum entropy
    • Laue,E.D., Mayger,M.R., Skilling,J. and Staunton,J. (1986) Reconstruction of phase sensitive 2D NMR spectra by maximum entropy. J. Magn. Reson., 68, 14-29.
    • (1986) J. Magn. Reson. , vol.68 , pp. 14-29
    • Laue, E.D.1    Mayger, M.R.2    Skilling, J.3    Staunton, J.4
  • 31
    • 0001250026 scopus 로고
    • 1H 2D NMR spectra by interactive computer graphics
    • 1H 2D NMR spectra by interactive computer graphics. J. Magn. Reson., 84, 627-633.
    • (1989) J. Magn. Reson. , vol.84 , pp. 627-633
    • Kraulis, P.J.1
  • 32
    • 9444245493 scopus 로고
    • Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR
    • Grzesiek,S. and Bax,A. (1992) Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR. J. Am. Chem. Soc., 114, 6291-6293.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 6291-6293
    • Grzesiek, S.1    Bax, A.2
  • 33
    • 43949167657 scopus 로고
    • HNCACB, a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the alpha- and beta-carbon resonances in proteins
    • Wittekind,M. and Mueller,L. (1993) HNCACB, a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the alpha- and beta-carbon resonances in proteins. J. Magn. Reson. Ser. B, 101, 201-205.
    • (1993) J. Magn. Reson. Ser. B , vol.101 , pp. 201-205
    • Wittekind, M.1    Mueller, L.2
  • 39
    • 0028393784 scopus 로고
    • The 13C Chemical-Shift Index: A simple method for the identification of protein secondary structure using 13C chemical shift data
    • Wishart,D.S. and Sykes,B.D. (1994) The 13C Chemical-Shift Index: a simple method for the identification of protein secondary structure using 13C chemical shift data. J. Biomol. NMR, 4, 171-180.
    • (1994) J. Biomol. NMR , vol.4 , pp. 171-180
    • Wishart, D.S.1    Sykes, B.D.2
  • 41
    • 0000195671 scopus 로고
    • Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
    • Bodenhausen,G. and Ruben,D.J. (1980) Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem. Phys. Lett., 69, 185-189.
    • (1980) Chem. Phys. Lett. , vol.69 , pp. 185-189
    • Bodenhausen, G.1    Ruben, D.J.2
  • 42
    • 0027787894 scopus 로고
    • 2O in protein NMR. Application to sensitivity enhancement and NOE measurements
    • 2O in protein NMR. Application to sensitivity enhancement and NOE measurements. J. Am. Chem. Soc., 115, 12593-12594.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 12593-12594
    • Grzesiek, S.1    Bax, A.2
  • 43
  • 45
    • 0031940556 scopus 로고    scopus 로고
    • RecA protein has extremely high cooperativity for substrate in its ATPase activity
    • Mikawa,T., Masui,R. and Kuramitsu,S. (1998) RecA protein has extremely high cooperativity for substrate in its ATPase activity. J. Biochem., 123, 450-457.
    • (1998) J. Biochem. , vol.123 , pp. 450-457
    • Mikawa, T.1    Masui, R.2    Kuramitsu, S.3
  • 46
    • 0029835784 scopus 로고    scopus 로고
    • Interaction of Escherichia coli RecA protein with LexA repressor. II. Inhibition of DNA strand exchange by the uncleavable LexA S119A repressor argues that recombination and SOS induction are competitive processes
    • Harmon,F.G., Rehrauer,W.M. and Kowalczykowski,S.C. (1996) Interaction of Escherichia coli RecA protein with LexA repressor. II. Inhibition of DNA strand exchange by the uncleavable LexA S119A repressor argues that recombination and SOS induction are competitive processes. J. Biol. Chem., 271, 23874-23883.
    • (1996) J. Biol. Chem. , vol.271 , pp. 23874-23883
    • Harmon, F.G.1    Rehrauer, W.M.2    Kowalczykowski, S.C.3


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