Analysis of the role of predicted RNA secondary structures in Ebola virus replication

Virology

Volumn 306, Issue 2, 2003, Pages 210-218

  Crary, Sharon M ^a   Towner, Jonathan S ^a   Honig, Jessica E ^a   Shoemaker, Trevor R ^a   Nichol, Stuart T ^a,b  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; VIRUS RNA;

ARTICLE; BASE PAIRING; EBOLA VIRUS; EMBRYO; GENE DISRUPTION; GENE EXPRESSION; GENE MUTATION; GENETIC ENGINEERING; GENOME ANALYSIS; HUMAN; HUMAN CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; REPORTER GENE; RNA ANALYSIS; RNA SEQUENCE; RNA STRUCTURE; SEQUENCE ANALYSIS; VIRUS GENOME; VIRUS REPLICATION;

EBOLA VIRUS;

EID: 0037440722     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0042-6822(02)00014-4     Document Type: Article

References (20)

1. Calain P., Monroe M.C., Nichol S.T. Ebola virus defective interfering particles and persistent infection. Virology. 262:(1):1999;114-128.
2. Dawson M.C., Elliott D.C., Elliot W.H., Jones K.M. In "Data for Biochemical Research. 1986;103 Oxford Univ. Press, New York.
3. Elliot L.H., Sanchez A., Holloway B.P., Kiley M.P., McCormick J.B. Ebola protein analyses for the determination of genetic organization. Arch. Virol. 133:1993;423-436.
4. Fearns R., Collins P.L., Peeples M.E. Functional analysis of the genomic and antigenomic promoters of human respiratory syncytial virus. J. Virol. 74:(13):2000;6006-6014.
5. Fearns R., Peeples M.E., Collins P.L. Mapping the transcription and replication promoters of respiratory syncytial virus. J. Virol. 76:(4):2002;1663-1672.
6. Ikegami T., Calaor A.B., Miranda M.E., Niikura M., Saijo M., Kurane I., Yoshikawa Y., Morikawa S. Genome structure of Ebola virus subtype Reston differences among Ebola subtypes . Arch. Virol. 146:2001;2021-2027.
7. Kiley L.H., Wilusz J., McCormick J.B., Keene J.D. Conservation of the 3′ terminal nucleotide sequences of Ebola and Marburg virus. Virology. 149:1986;251-254.
8. Mathews D.H., Sabina J., Zuker M., Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:1999;911-940.
9. Muhlberger E., Lotfering B., Klenk H.D., Becker S. Three of the four nucleocapsid proteins of Marburg virus, NP, VP35, and L, are sufficient to mediate replication and transcription of Marburg virus-specific monocistronic minigenomes. J. Virol. 72:(11):1998;8756-8764.
10. Pattnaik A.K., Ball L.A., LeGrone A.W., Wertz G.W. Infectious defective interfering particles of VSV from transcripts of a cDNA clone. Cell. 69:1992;1011-1020.
11. Perrotta A.T., Been M.D. The pseudoknot-like structure required for efficient self- cleavage of hepatitis delta virus RNA. Nature. 350:1991;434-436.
12. Sanchez A., Kiley M.P., Holloway B.P., McCormick J.B., Auperin D.D. The nucleoprotein gene of Ebola virus cloning, sequencing, and in vitro expression . Virology. 170:(1):1989;81-91.
13. Sanchez A., Trappier S.G., Mahy B.W., Peters C.J., Nichol S.T. The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing. Proc. Natl. Acad. Sci. USA. 93:1996;3602-3607.
14. Tapparel C., Roux L. The efficiency of Sendai virus genomic replication the importance of the RNA primary sequence independent of terminal complementarity . Virology. 225:1996;163-171.
15. Volchkov V.E., Volchkova V.A., Chepurnov A.A., Blinov V.M., Dolnik O., Netesov S.V., Feldmann H. Characterization of the L gene and 5′ trailer region of Ebola virus. J. Gen. Virol. 80:1999;355-362.
16. Vulliemoz D., Roux L. "Rule of Six:" How does the Sendai virus RNA polymerase keep count? J. Virol. 75:(10):2001;4506-4518.
17. Wertz G.W., Whelan S., LeGrone A., Ball L.A. Extent of terminal complementarity modulates the balance between transcription and replication of vesicular stomatitis virus RNA. Proc. Natl. Acad. Sci. USA. 91:1994;8587-8591.
18. Whelan S.P.J., Wertz G.W. Regulation of RNA synthesis by the genomic termini of vesicular stomatitis virus identification of distinct sequences essential for transcription but not replication . J. Virol. 73:1999;297-306.
19. Zaug A.J., Grosshans C.A., Cech T.R. Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes . Biochemistry. 27:(25):1988;8924-8931.
20. Zuker M., Mathews D.H., Turner D.H. Algorithms and thermodynamics for RNA secondary structure prediction a practical guide in RNA biochemistry and biotechnology . Barciszewski J., Clark B.F.C. 1999;RNA Biochemistry and Biotechnology, Kluwer Academic Publishers, Dordrecht/Norwell, MA.