-
1
-
-
0001573685
-
-
Alagona, G.; Desmeules, P.; Ghio, C.; Kollman, P. A. J Am Chem Soc 1984, 106, 3623.
-
(1984)
J Am Chem Soc
, vol.106
, pp. 3623
-
-
Alagona, G.1
Desmeules, P.2
Ghio, C.3
Kollman, P.A.4
-
2
-
-
0025743628
-
-
Bash, P. A.; Field, M. J.; Davenport, R. C.; Petsko, G. A.; Ringe, D.; Karplus, M. Biochemistry 1991, 30, 5826.
-
(1991)
Biochemistry
, vol.30
, pp. 5826
-
-
Bash, P.A.1
Field, M.J.2
Davenport, R.C.3
Petsko, G.A.4
Ringe, D.5
Karplus, M.6
-
3
-
-
0024282745
-
-
Nickbarg, E. B.; Davenport, R. C.; Petsko, G. A.; Knowles, J. R. Biochemistry 1988, 27, 5948.
-
(1988)
Biochemistry
, vol.27
, pp. 5948
-
-
Nickbarg, E.B.1
Davenport, R.C.2
Petsko, G.A.3
Knowles, J.R.4
-
4
-
-
0025893928
-
-
Komives, E. A.; Chang, L. C.; Lolis, E.; Tilton, R. F.; Petsko, G. A.; Knowles, J. R. Biochemistry 1991, 30, 3011.
-
(1991)
Biochemistry
, vol.30
, pp. 3011
-
-
Komives, E.A.1
Chang, L.C.2
Lolis, E.3
Tilton, R.F.4
Petsko, G.A.5
Knowles, J.R.6
-
5
-
-
0028817050
-
-
Alagona, G.; Ghio, C.; Kollman, P. A. J Am Chem Soc 1995, 117, 9855.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 9855
-
-
Alagona, G.1
Ghio, C.2
Kollman, P.A.3
-
7
-
-
2642622572
-
-
Stanton, R. V.; Peräkylä, M.; Bakowies, D.; Kollman, P. A. J Am Chem Soc 1998, 120, 3448.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 3448
-
-
Stanton, R.V.1
Peräkylä, M.2
Bakowies, D.3
Kollman, P.A.4
-
9
-
-
0017041258
-
-
(b) Leadlay, P. F.; Albery, W. J. ; Knowles, J. R. Biochemistry 1976, 15, 5617
-
(1976)
Biochemistry
, vol.15
, pp. 5617
-
-
Leadlay, P.F.1
Albery, W.J.2
Knowles, J.R.3
-
13
-
-
0021757436
-
-
Weiner, S. J.; Kollman, P. A.; Case, D. A.; Singh, U. C.; Ghio, C.; Alagona, G.; Profeta, S., Jr.; Weiner, P. J Am Chem Soc 1984, 106, 765.
-
(1984)
J Am Chem Soc
, vol.106
, pp. 765
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, G.6
Profeta S., Jr.7
Weiner, P.8
-
14
-
-
0022551023
-
-
Alagona, G.; Ghio, C.; Kollman, P. A. J Mol Biology 1986, 191, 23.
-
(1986)
J Mol Biology
, vol.191
, pp. 23
-
-
Alagona, G.1
Ghio, C.2
Kollman, P.A.3
-
15
-
-
84962428702
-
-
Alagona, G.; Ghio, C.; Kollman, P. A. J Mol Struct (Theochem) 1996, 371, 287.
-
(1996)
J Mol Struct (Theochem)
, vol.371
, pp. 287
-
-
Alagona, G.1
Ghio, C.2
Kollman, P.A.3
-
17
-
-
0025276041
-
-
(a) Pompliano, D. L.; Peyman, A.; Knowles, J. R. Biochemistry 1990, 29, 3186.
-
(1990)
Biochemistry
, vol.29
, pp. 3186
-
-
Pompliano, D.L.1
Peyman, A.2
Knowles, J.R.3
-
18
-
-
0033528671
-
-
(b) Zhang, Z.; Komives, E. A.; Sugio, S.; Blacklow, S. C.; Narayama, N.; Xuong, N. H.; Stock, A. M.; Petsko, G. A.; Ringe, D. Biochemistry 1999, 38, 4389.
-
(1999)
Biochemistry
, vol.38
, pp. 4389
-
-
Zhang, Z.1
Komives, E.A.2
Sugio, S.3
Blacklow, S.C.4
Narayama, N.5
Xuong, N.H.6
Stock, A.M.7
Petsko, G.A.8
Ringe, D.9
-
21
-
-
0030734269
-
-
(a) Harris, T. K.; Abeygunawardana, C.; Mildvan, A. S. Biochemistry 1997, 36, 14661
-
(1997)
Biochemistry
, vol.36
, pp. 14661
-
-
Harris, T.K.1
Abeygunawardana, C.2
Mildvan, A.S.3
-
22
-
-
0032564378
-
-
(b) Harris, T. K.; Cole, R. N.; Comer, F. I.; Mildvan, A. S. Biochemistry 1998, 37, 16828.
-
(1998)
Biochemistry
, vol.37
, pp. 16828
-
-
Harris, T.K.1
Cole, R.N.2
Comer, F.I.3
Mildvan, A.S.4
-
23
-
-
0004133516
-
-
Gaussian, Inc.: Pittsburgh, PA
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Pikorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P. M. W.; Johnson, B. G.; Chen, W.; Wong, M. W.; Andres, J. L.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian98, Revision A.7; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
(1998)
Gaussian98, Revision A.7
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery, J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Pikorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
24
-
-
0004268506
-
-
University of California, San Francisco CA
-
(a) Case, D. A.; Pearlman, D. A.; Caldwell, J. W.; Cheatham, T. E., III; Ross, W. S.; Simmerling, C. L.; Darden, T. A.; Merz, K. M.; Stanton, R. V.; Cheng, A. L.; Vincent, J. J.; Crowley, M.; Tsui, V.; Radmer, R. J.; Duan, Y.; Pitera, J.; Massova, I.; Seibel, G. L.; Singh, U. C.; Weiner, P. K.; Kollman, P. A., AMBER 6, University of California, San Francisco CA (1999)
-
(1999)
AMBER 6
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham T.E. III4
Ross, W.S.5
Simmerling, C.L.6
Darden, T.A.7
Merz, K.M.8
Stanton, R.V.9
Cheng, A.L.10
Vincent, J.J.11
Crowley, M.12
Tsui, V.13
Radmer, R.J.14
Duan, Y.15
Pitera, J.16
Massova, I.17
Seibel, G.L.18
Singh, U.C.19
Weiner, P.K.20
Kollman, P.A.21
more..
-
25
-
-
0029633186
-
-
Pearlman, D. A.; Case, D. A.; Caldwell, J. W.; Ross, W. S.; Cheatham, T. E., III; DeBolt, S.; Ferguson, D.; Seibel, G.; Kollman, P. A. Comp Phys Commun 1995, 91, 1.
-
(1995)
Comp Phys Commun
, vol.91
, pp. 1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham T.E. III5
DeBolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.A.9
-
26
-
-
0003023614
-
-
Pullman, A., et al., Eds.: Kluwer: The Netherlands
-
Simmerling, C.; Elber, R.; Zhang, J. In Modelling of Biomolecular Structure and Mechanisms; Pullman, A., et al., Eds.: Kluwer: The Netherlands, 1995; p 241.
-
(1995)
Modelling of Biomolecular Structure and Mechanisms
, pp. 241
-
-
Simmerling, C.1
Elber, R.2
Zhang, J.3
-
27
-
-
85033656836
-
-
Computer Graphics Lab., School of Pharmacy, University of California, San Francisco
-
MidasPlus, Computer Graphics Lab., School of Pharmacy, University of California, San Francisco
-
MidasPlus
-
-
-
29
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P. Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J Am Chem Soc 1995, 117, 5179.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
30
-
-
3042524904
-
-
Bayly, C. I.; Cieplak, P.; Cornell, W. D.; Kollman, P. A. J Phys Chem 1993, 97, 10269.
-
(1993)
J Phys Chem
, vol.97
, pp. 10269
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
31
-
-
0025882959
-
-
Davenport, R. C.; Bash, P. A.; Seaton, B. A.; Karplus, M.; Petsko, G. A.; Ridge, D. Biochemistry 1991, 30, 5821.
-
(1991)
Biochemistry
, vol.30
, pp. 5821
-
-
Davenport, R.C.1
Bash, P.A.2
Seaton, B.A.3
Karplus, M.4
Petsko, G.A.5
Ridge, D.6
-
32
-
-
0012978163
-
-
note
-
-) restrained to be equal in the three species (A, TS, and B), thus limiting the changes to the enediolate pseudoring, was also tested without any special advantage.
-
-
-
-
33
-
-
0012925634
-
-
note
-
For the phosphate arrangements we maintain the same notation as in ref. 9.
-
-
-
-
36
-
-
0025358007
-
-
(a) Lolis, E.; Alber, T.; Davenport, R. C.; Rose, D.; Hartman, F. C.; Petsko, G. A. Biochemistry 1990, 29, 6609
-
(1990)
Biochemistry
, vol.29
, pp. 6609
-
-
Lolis, E.1
Alber, T.2
Davenport, R.C.3
Rose, D.4
Hartman, F.C.5
Petsko, G.A.6
-
38
-
-
2642622572
-
-
Stanton, R. V.; Peräkylä, M.; Bakowies, D.; Kollman, P. A. J Am Chem Soc 1998, 120, 3448.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 3448
-
-
Stanton, R.V.1
Peräkylä, M.2
Bakowies, D.3
Kollman, P.A.4
-
39
-
-
33750587438
-
-
Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Di Nola, A. D.; Haak, J. R. J Chem Phys 1984, 81, 3684.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Di Nola, A.D.4
Haak, J.R.5
-
40
-
-
33845379042
-
-
(a) Chandrasekhar, J.; Smith, S. F.; Jorgensen, W. L. J Am Chem Soc 1985, 107, 154
-
(1985)
J Am Chem Soc
, vol.107
, pp. 154
-
-
Chandrasekhar, J.1
Smith, S.F.2
Jorgensen, W.L.3
-
43
-
-
84962455076
-
-
(a) Nagy, P. I.; Dunn, W. J., III; Alagona, G.; Ghio, C. J Am Chem Soc 1991, 113, 6719
-
(1991)
J Am Chem Soc
, vol.113
, pp. 6719
-
-
Nagy, P.I.1
Dunn W.J. III2
Alagona, G.3
Ghio, C.4
-
44
-
-
5744250998
-
-
(b) Nagy, P. I.; Dunn, W. J., III; Alagona, G.; Ghio, C. J Am Chem Soc 1992, 114, 4752
-
(1992)
J Am Chem Soc
, vol.114
, pp. 4752
-
-
Nagy, P.I.1
Dunn W.J. III2
Alagona, G.3
Ghio, C.4
-
45
-
-
0000538413
-
-
(c) Nagy, P. I.; Dunn, W. J., III; Alagoma, G.; Ghio, C. J Phys Chem 1993, 97, 4628
-
(1993)
J Phys Chem
, vol.97
, pp. 4628
-
-
Nagy, P.I.1
Dunn W.J. III2
Alagoma, G.3
Ghio, C.4
-
46
-
-
0001024767
-
-
(d) Alagona, G.; Ghio, C.; Nagy, P. I.; Durant, G. J. J Phys Chem 1994, 98, 5422
-
(1994)
J Phys Chem
, vol.98
, pp. 5422
-
-
Alagona, G.1
Ghio, C.2
Nagy, P.I.3
Durant, G.J.4
-
47
-
-
84961984905
-
-
(e) Nagy, P. I.; Alagona, G.; Ghio, C. J Am Chem Soc 1999, 121, 4804.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 4804
-
-
Nagy, P.I.1
Alagona, G.2
Ghio, C.3
-
48
-
-
84962476478
-
-
Alagona, G.; Ghio, C.; Igual, J.; Tomasi, J. J Mol Struct (Theochem) 1990, 204, 253.
-
(1990)
J Mol Struct (Theochem)
, vol.204
, pp. 253
-
-
Alagona, G.1
Ghio, C.2
Igual, J.3
Tomasi, J.4
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