Teleost multiple tissue (tmt) opsin: A candidate photopigment regulating the peripheral clocks of zebrafish?

Molecular Brain Research

Volumn 112, Issue 1-2, 2003, Pages 135-145

  Moutsaki, Paraskevi ^a   Whitmore, David ^b   Bellingham, James ^a   Sakamoto, Katsuhiko ^c   David Gray, Zoë K ^a   Foster, Russell G ^a  

^a CHARING CROSS HOSPITAL   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

^c NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Circadian; Opsin; Photoreception; Zebrafish

Indexed keywords

AMINO ACID; OPSIN; PIGMENT;

ARTICLE; CELL LINE; EMBRYO CELL; GENE EXPRESSION; GENE STRUCTURE; NERVOUS TISSUE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; REGULATORY MECHANISM; TELEOST; VERTEBRATE; ZEBRA FISH;

DANIO RERIO; TELEOSTEI; VERTEBRATA;

EID: 0037430924     PISSN: 0169328X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-328X(03)00059-7     Document Type: Article

References (60)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Balsalobre A., Damiola F., Schibler U. A serum shock induces circadian gene expression in mammalian tissue culture cells. Cell. 93:1998;929-937.
3. Barrallo A., Gonzalez-Sarmiento R., Garcia-Isidoro M., Cidad P., Porteros A., Rodriguez R.E. Differential brain expression of a new beta-actin gene from zebrafish (Danio rerio). Eur. J. Neurosci. 11:1999;369-372.
4. J. Bellingham, D.J. Wells, R.G. Foster, In silico characterisation and chromosomal localisation of human RRH (peropsin) - implications for opsin evolution, BMC Genomics 4 (2003).
5. Bellingham J., Foster R.G. Opsins and mammalian photoentrainment. Cell Tiss. Res. 309:2002;57-71.
6. Bellingham J., Whitmore D., Philp A.R., Wells D.J., Foster R.G. Zebrafish Melanopsin: Isolation, tissue localisation and phylogenetic position. Mol. Brain Res. 107:2002;128-136.
7. Blackshaw S., Snyder S.H. Parapin opsin, a novel catfish opsin localized to the parapineal organ, defines a new gene family. J. Neurosci. 17:1997;8083-8092.
8. Blackshaw S., Snyder S.H. Encephalopsin: a novel mammalian extraretinal opsin discretely localized in the brain. J. Neurosci. 19:1999;3681-3690.
9. Bownds D. Site of attachment of retinal in rhodopsin. Nature. 216:1967;1178-1181.
10. Buijs R.M., Kalsbeek A. Hypothalamic integration of central and peripheral clocks. Nat. Rev. Neurosci. 2:2001;521-526.
11. Cermakian N., Sassone-Corsi P. Environmental stimulus perception and control of circadian clocks. Curr. Opin. Neurobiol. 12:2002;359-365.
12. Cermakian N., Pando M.P., Thompson C.L., Pinchak A.B., Selby C.P., Gutierrez L., et al. Light induction of a vertebrate clock gene involves signaling through blue-light receptors and MAP kinases. Curr. Biol. 12:2002;844-848.
13. Cermakian N., Whitmore D., Foulkes N.S., Sassone-Corsi P. Asynchronous oscillations of two zebrafish CLOCK partners reveal differential clock control and function. Proc. Natl. Acad. Sci. USA. 97:2000;4339-4344.
14. Chen J., Makino C.L., Peachey N.S., Baylor D.A., Simon M.I. Mechanisms of rhodopsin inactivation in vivo as revealed by COOH-terminal truncation mutant. Science. 267:1995;374-377.
15. Chen P., Hao W., Rife L., Wang X.P., Shen D., Chen J., et al. A photic visual cycle of rhodopsin regeneration is dependent on Rgr. Nat. Genet. 3:2001;256-260.
16. Foster R.G. Shedding light on the biological clock. Neuron. 20:1998;829-832.
17. Foster R.G. Keeping an eye on the time. Invest. Ophthalmol. Vis. Sci. 43:2002;1286-1298.
18. Foster R.G., Soni B.G. Extraretinal photoreceptors and their regulation of temporal physiology. Rev. Reproduction. 3:1998;145-150.
19. Freedman M.S., Lucas R.J., Soni B., von Schantz M., Munoz M., David-Gray Z.K., et al. Regulation of mammalian circadian behavior by non-rod, non-cone, ocular photoreceptors. Science. 284:1999;502-504.
20. Galtier N., Gouy M., Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12:1996;543-548.
21. Glardon S., Callaerts P., Halder G., Gehring W.J. Conservation of Pax-6 in a lower chordate, the ascidian Phallusia mammillata. Development. 124:1997;817-825.
22. Halford S., Freedman M.S., Bellingham J., Inglis S.L., Poopalasundaram S., Soni B.G., et al. Characterization of a novel human opsin gene with wide tissue expression and identification of embedded and flanking genes on chromosome 1q43. Genomics. 72:2001;203-208.
23. Hannibal J., Hindersson P., Knudsen S.M., Georg B., Fahrenkrug J. The photopigment melanopsin is exclusively present in pituitary adenylate cyclase-activating polypeptide-containing retinal ganglion cells of the retinohypothalamic tract. J. Neurosci. 22:2002;RC191.
24. Hattar S., Liao H.W., Takao M., Berson D.M., Yau K.W. Melanopsin-containing retinal ganglion cells: architecture, projections, and intrinsic photosensitivity. Science. 295:2002;1065-1070.
25. Jiang M., Pandey S., Fong H.K. An opsin homologue in the retina and pigment epithelium. Invest. Ophthalmol. Vis. Sci. 34:1993;3669-3679.
26. Karnik S.S., Sakmar T.P., Chen H.B., Khorana H.G. Cysteine residues 110 and 187 are essential for the formation of correct structure in bovine rhodopsin. Proc. Natl. Acad. Sci. USA. 85:1988;8459-8463.
27. Kawamura S., Blow N.S., Yokoyama S. Genetic analysis of visual pigments of the pigeon (Columba livia). Genetics. 153:1999;1839-1850.
28. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
29. Kobayashi Y., Ishikawa T., Hirayama J., Daiyasu H., Kanai S., Toh H., et al. Molecular analysis of zebrafish photolyase/cryptochrome family: two types of cryptochromes present in zebrafish. Genes Cells. 5:2000;725-738.
30. Lin S., Gaiano N., Culp P., Burns J.C., Friedmann T., Yee J.K., Hopkins N. Integration and germ-line transmission of a pseudotyped retroviral vector in zebrafish. Science. 265:1994;666-669.
31. Lucas R.J., Freedman M.S., Munoz M., Garcia-Fernandez J.M., Foster R.G. Regulation of the mammalian pineal by non-rod, non-cone, ocular photoreceptors. Science. 284:1999;505-507.
32. Max M., McKinnon P.J., Seidenman K.J., Barrett R.K., Applebury M.L., Takahashi J.S., et al. Pineal opsin: a nonvisual opsin expressed in chick pineal. Science. 267:1995;1502-1506.
33. Moutsaki P., Bellingham J., Soni B.G., David-Gray Z.K., Foster R.G. Sequence, genomic structure, and tissue expression of carp (Cyprinus carpio L.) vertebrate ancient (VA) opsin. FEBS Lett. 473:2000;316-322.
34. Nakagawa M., Iwasa T., Kikkawa S., Tsuda M., Ebrey T.G. How vertebrate and invertebrate visual pigments differ in their mechanism of photoactivation. Proc. Natl. Acad. Sci. USA. 96:1999;6189-6192.
35. Nathans J., Hogness D.S. Isolation, sequence analysis, and intron-exon arrangement of the gene encoding bovine rhodopsin. Cell. 34:1983;807-814.
36. Nathans J., Darcy T., Hogness D.S. Molecular genetics of human color vision: The genes encoding blue, green, and red pigments. Science. 232:1986;193-202.
37. Okano T., Yoshizawa T., Fukada Y. Pinopsin is a chicken pineal photoreceptive molecule. Nature. 372:1994;94-97.
38. Palczewski K., Kumasaka T., Hori T., Behnke C.A., Motoshima H., Fox B.A., et al. Crystal structure of rhodopsin: A G protein-coupled receptor. Science. 289:2000;739-745.
39. Pando M.P., Pinchak A.B., Cermakian N., Sassone-Corsi P. A cell-based system that recapitulates the dynamic light-dependent regulation of the vertebrate clock. Proc. Natl. Acad. Sci. 98:2001;10178-10183.
40. Peppelenbosch M.P., Tertoolen L.G., de Laat S.W., Zivkovic D. Ionic responses to epidermal growth factor in zebrafish cells. Exp. Cell. Res. 218:1995;183-188.
41. Philp A.R., Bellingham J., Garcia-Fernandez J.-M., Foster R.G. A novel rod-like opsin isolated from the extra-retinal photoreceptors of teleost fish. FEBS Lett. 468:2000;181-188.
42. Provencio I., Jiang G., DeGrip W.J., Hayes W.P., Rollag M.D. Melanopsin: An opsin in melanophores, brain and eye. Proc. Natl. Acad. Sci. USA. 95:1998;340-345.
43. Provencio I., Rodriguez I.R., Jiang G., Hayes W.P., Moreira E.F., Rollag M.D. A novel human opsin in the inner retina. J. Neurosci. 20:2000;600-605.
44. Ralph M.R., Foster R.G., Davis F.C., Menaker M. Transplanted suprachiasmatic nucleus determines circadian period. Science. 247:1990;975-978.
45. Rim J., Oprian D.D. Constitutive activation of opsin: interaction of mutants with rhodopsin kinase and arrestin. Biochemistry. 34:1995;11938-11945.
46. Robinson P.R., Cohen G.B., Zhukovsky E.A., Oprian D.D. Constitutively active mutants of rhodopsin. Neuron. 4:1992;719-725.
47. Roenneberg T., Foster R.G. Twilight times: light and the circadian system. Photochem. Photobiol. 66:1997;549-561.
48. Shearman L.P., Sriram S., Weaver D.R., Maywood E.S., Chaves I., Zheng B., et al. Interacting molecular loops in the mammalian circadian clock. Science. 288:2000;1013-1019.
49. Shen D., Jiang M., Hao W., Tao L., Salazar M., Fong H.K. A human opsin-related gene that encodes a retinaldehyde-binding protein. Biochemistry. 33:1994;13117-13125.
50. Soni B.G., Foster R.G. A novel and ancient vertebrate opsin. FEBS Lett. 406:1997;279-283.
51. Soni B.G., Philp A.R., Knox B.E., Foster R.G. Novel retinal photoreceptors. Nature. 394:1998;27-28.
52. Starace D.M., Knox B.E. Activation of transducin by a Xenopus short wavelength visual pigment. J. Biol. Chem. 272:1997;1095-1100.
53. Stokkan K.-A., Yamazaki S., Tei H., Sakaki Y., Menaker M. Entrainment of the circadian clock in the liver by feeding. Science. 291:2001;490-493.
54. Sun H., Gilbert D.J., Copeland N.G., Jenkins N.A., Nathans J. Peropsin, a novel visual pigment-like protein located in the apical microvilli of the retinal pigment epithelium. Proc. Natl. Acad. Sci. USA. 94:1997;9893-9898.
55. Takahashi J.S., Murakami N., Nikaido S.S., Pratt B.L., Robertson L.M. The avian pineal, a vertebrate model system of the circadian oscillator: Cellular regulation of circadian rhythms by light, second messengers, and macromolecular synthesis. Recent Prog. Horm. Res. 45:1989;279-352.
56. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882.
57. Whitmore D., Foulkes N.S., Sassone-Corsi P. Light acts directly on organs and cells in culture to set the vertebrate circadian clock. Nature. 404:2000;87-91.
58. Whitmore D., Foulkes N.S., Strahle U., Sassone-Corsi P. Zebrafish clock rhythmic expression reveals independent peripheral circadian oscillators. Nat. Neurosci. 1:1998;701-707.
59. Yamashita T., Terakita A., Shichida Y. Distinct roles of the second and third cytoplasmic loops of bovine rhodopsin in G protein activation. J. Biol. Chem. 275:2000;34272-34279.
60. Zhukovsky E.A., Oprian D.D. Effect of carboxylic acid side chains on the absorption maximum of visual pigments. Science. 246:1989;928-930.