Prokaryotic phylogeny based on complete genomes without sequence alignment

Modern Physics Letters B

Volumn 17, Issue 3, 2003, Pages 91-94

  Hao, Bailin ^a,b   Qi, Ji ^b   Wang, Bin ^b  

^a FUDAN UNIVERSITY   (China)

^b INSTITUTE OF THEORETICAL PHYSICS   (China)

Author keywords

Compositional distance; Markov assumption; Phylogeny; Prokaryote; Random background

Indexed keywords

BACTERIAL DNA;

AMINO ACID SEQUENCE; BACTERIUM; CONFERENCE PAPER; GENOME; MATHEMATICAL ANALYSIS; MUTATION; PHYLOGENY; PROKARYOTE; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

EID: 0037428845     PISSN: 02179849     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0217984903004968     Document Type: Conference Paper

References (8)

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4. R. Hu and B. Wang, Physica A290, 464 (2001).
5. J. Qi, B. Wang and B. Hao, "Prokaryote phylogeny based on oligopeptide frequency of whole proteome supports SSU rRNA tree of life," submitted for publication.
6. H. Wei, J. Qi and B. Hao, "Prokryote phylogeny based on K-peptide frequency of ribosomal proteins," in preparation.
7. K. Chu, J. Qi, Z. Yu and V. O. Anh, "Origin and phylogeny of chloroplasts: A simple correlation analysis of complete genomes," submitted for publication.
8. B. Hao, H. Xie and S. Zhang, "Compositional representation of protein sequences and the number of Eulerian loops," Los Alamos National Laboratory e-Print arXiv: physics/0103028, available at: http://lanl.arXiv.org/.