Specific detection and differentiation of two subspecies of Fusobacterium necrophorum by PCR

Veterinary Microbiology

Volumn 91, Issue 2-3, 2003, Pages 183-195

  Narongwanichgarn, Wonganun ^a   Misawa, Naoaki ^a   Jin, Jing Hua ^a   Amoako, Kingsley Kwaku ^b   Kawaguchi, Emi ^a   Shinjo, Toshiharu ^a   Haga, Takeshi ^a   Goto, Yoshitaka ^a  

^a UNIVERSITY OF MIYAZAKI   (Japan)

^b UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

Fusobacterium necrophorum; PCR; Specific detection and differentiation

Indexed keywords

DNA FRAGMENT; PRIMER DNA;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; CLUSTER ANALYSIS; DNA FINGERPRINTING; DOT HYBRIDIZATION; FUSOBACTERIUM NECROPHORUM; GENE AMPLIFICATION; GENOME; LACTOCOCCUS LACTIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; RALSTONIA SOLANACEARUM; RANDOM AMPLIFIED POLYMORPHIC DNA;

BASE SEQUENCE; CLONING, MOLECULAR; CLUSTER ANALYSIS; DNA PRIMERS; DNA, BACTERIAL; FUSOBACTERIUM NECROPHORUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEQUENCE ANALYSIS, DNA;

FUSOBACTERIUM; FUSOBACTERIUM NECROPHORUM; LACTOCOCCUS; LACTOCOCCUS LACTIS; LACTOCOCCUS LACTIS SUBSP. LACTIS; RALSTONIA; RALSTONIA SOLANACEARUM;

EID: 0037413888     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1135(02)00295-X     Document Type: Article

References (41)

1. Aalbaek B. Sphaerophorus necrophorus a study of 23 strains. Acta Vet. Scand. 12:1971;344-364.
2. Akopyanz N., Bukanov N.O., Westblom T.U., Kresovich S., Berg D.E. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucl. Acids Res. 20:1992;5137-5142.
3. Amoako K.K., Goto Y., Shinjo T. Comparison of extracellular enzymes of Fusobacterium necrophorum subsp. necrophorum and Fusobacterium necrophorum subsp. funduliforme. J. Clin. Microbiol. 31:1993;2244-2247.
4. Amoako K.K., Goto Y., Shinjo T. Study on the factors affecting the hemolytic activity of Fusobacterium necrophorum. Vet. Microbiol. 41:1994;11-18.
5. Brown R., Lough H.G., Poxton I.R. Phenotypic characteristic and lipopolysaccharides of human and animal isolates of Fusobacterium necrophorum. J. Med. Microbiol. 46:1997;873-878.
6. Daffonchio D., Borin S., Frova G., Gallo R., Mori E., Fani R., Sorlini C. A randomly amplified polymorphic DNA marker specific for the Bacillus cereus group is diagnostic for Bacillus anthracis. Appl. Environ. Microbiol. 65:1999;1298-1303.
7. Fadl A.A., Nguyen A.V., Khan M.I. Analysis of Salmonella enteritidis isolates by arbitrarily primed PCR. J. Clin. Microbiol. 33:1995;987-989.
8. Fifis T., Costopoulos C., Vaughan J.A. Evidence for phospholipase B activity in Fusobacterium necrophorum cultures and its association with hemolysin/leucocidin activities. Vet. Microbiol. 49:1996;219-233.
9. Fox, G.E., Wisotzkey, J.D., Jurtshunk Jr., 1992. How close is close: 16S rRNA sequence identify may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170.
10. Hagelskjaer K.L., Prag J. Human necrobacillosis, with emphasis on Limierre' s syndrome. Clin. Infect. Dis. 31:2000;524-532.
11. Hernandez J., Fayos A., Ferrus M.A., Owen R.J. Random amplified polymorphic DNA fingerprinting of Campylobacter jejuni and C. coli isolates from human faeces, Seawater and poultry products. Res. Microbiol. 146:1995;685-696.
12. Hodgson A.L., Nicholson L.A., Doran T.J., Corner L.A. Restriction fragment length polymorphism analysis of Fusobacterium necrophorum using a novel repeat DNA sequence and 16S rRNA gene probe. FEMS Microbiol. Lett. 107:1993;205-210.
13. Holdeman, L.V., Cato, E.P., Moore, W.E.C., 1977. Anaerobe Laboratory Manual, 4th Ed. Southern Printing Co., Blacksburg, VA, pp. 23-28.
14. Holt, J.G., Krieg, N.R., Sneath, P.H.A., Staley, J.T., Williams, S.T., 1994. Bergey's Manual of Determinative Bacteriology, 9th Ed. A Waverly Company, Baltimore, MD, pp. 296-325.
15. Langworth B.F. Fusobacterium necrophorum as an animal pathogen. Bacteriol. Rev. 41:1977;373-390.
16. Lawson P.A., Gharbia S.E., Shah H.N., Clark D.R., Collins M.D. Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit rRNA. Int. J. Syst. Bacteriol. 41:1991;347-354.
17. Lechtenberg K.F., Nagaraja T.G., Leipold H.W., Chengappa M.M. Bacteriologic and histologic studies of hepatic abscesses in cattle. Am. J. Vet. Res. 49:1988;58-62.
18. Mazurier S.I., Wernars K. Typing of Listeria strains by random amplification of polymorphic DNA. Res. Microbiol. 143:1992;499-505.
19. Mazurier S.I., Giessen A.V., Heuvelmen K., Wernars K. RAPD analysis of Campylobacter isolates: DNA fingerprinting without the need to purify DNA. Lett. Appl. Microbiol. 14:1992;260-262.
20. Misawa N., Allos B.M., Blaser M.J. Differentiation of Campylobacter jejuni serotype O19 strains from non-O19 strains by PCR. J. Clin. Microbiol. 36:1998;3567-3573.
21. Miyazato S., Shinjo T., Yago H., Nakamura N. Fimbriae (pili) detected in Fusobacterium necrophorum. Jpn. J. Vet. Sci. 40:1978;619-621.
22. Narayanan S., Nagaraja T.G., Okwumabu O., Staats J., Chengappa M.M., Oberst R.D. Ribotyping to compare Fusobacterium necrophorum isolates from bovine liver abscesses, ruminal walls, and ruminal contents. Appl. Environ. Microbiol. 63:1997;4671-4678.
23. Narongwanichgarn W., Kawaguchi E., Misawa N., Goto Y., Haga T. Differentiation of Fusobacterium necrophorum subspecies from bovine pathological lesions by RAPD-PCR. Vet. Microbiol. 1:2001;383-388.
24. Nicholson L.A., Morrow C.J., Corner L.A., Hodgson A.L.M. Phylogenetic relationship of Fusobacterium necrophorum A, AB, and B biotypes base upon 16S rRNA gene sequence analysis. Int. J. Syst. Bacteriol. 44:1994;315-319.
25. Okwumabu O., Tan Z.L., Staats J., Oberst R.D., Chengappa M.M., Narayanan S. Ribotyping to differentiate Fusobacterium necrophorum subsp. necrophorum and Fusobacterium necrophorum subsp. funduliforme isolated from bovine ruminal contents and liver abscesses. Appl. Environ. Microbiol. 62:1996;469-472.
26. Olive D.M., Bean P. Principles and applications of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 37:1999;1661-1669.
27. Sambrook, J., Fristsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, New York, USA, p. 1.21.
28. Shinjo T., Miyazato S. Physiological and biochemical characteristics of Fusobacterium necrophorum biovar A and biovar B strains their deoxyribonucleic acid homology. Jpn. J. Vet. Sci. 43:1981;233-241.
29. Shinjo T., Hazu H., Kiyoyama H. Hydrophobicity of Fusobacterium necrophorum biovars A and B. FEMS Microbiol. Lett. 48:1987;243-247.
30. Shinjo T., Miyazato S., Kiyoyama H. Adherence of Fusobacterium necrophorum biovar A and B strains to erythrocytes and tissue culture cells. Ann. Inst. Pasteur/Microbiol. 139:1988;453-460.
31. Shinjo T., Hiraiwa K., Miyazato S. Recognition of biovar C of Fusobacterium necrophorum (Flugge) Moore and Holdman as Fusobacterium pseudonecrophorum sp. nov., nom. rev. (ex Prevote, 1940). Int. J. Syst. Bacteriol. 40:1990;71-73.
32. Shinjo T., Fujisawa T., Mitsuoka T. Proposal of two subspecies of Fusobacterium necrophorum (Flugge) Moore and Holdman: Fusobacterium necrophorum subsp. necrophorum subsp. nov., nom. rev. (ex Flugge, 1886), and Fusobacterium necrophorum subsp. funduliforme subsp. nov., nom. rev. (ex Halle, 1898). Int. J. Syst. Bacteriol. 41:1991;395-397.
33. Smith G.R. Pathogenicity of Fusobacterium necrophorum biovar B. Res. Vet. Sci. 52:1992;260-261.
34. Smith G.R., Thornton E.A. Pathogenicity of Fusobacterium necrophorum strains from man and animals. Epidemiol. Infect. 110:1993;499-506.
35. Tan Z.L., Nagaraja T.G., Chengappa M.M. Fusobacterium necrophorum infections: virulence factors, pathogenic mechanism and control measures. Vet. Res. Commun. 20:1996;113-140.
36. Teng L.J., Hsueh P.R., Tsai J.C., Chiang F.L., Chen C.Y., Ho S.W., Luh F.L. PCR assay for species-specific identification of Bacteroides thetaiotaomicron. J. Clin. Microbiol. 38:2000;1672-1675.
37. Timisjarvi A.T., Alatossava T. Strain-specific identification of probiotic Lactobacillus rhumnosus with randomly amplified polymorphic DNA-derived PCR primers. Appl. Environ. Microbiol. 64:1998;4816-4819.
38. Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucl. Acids Res. 18:1990;7213-7218.
39. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res. 18:1990;6531-6535.
40. Williams J.G.K., Hanafey M.K., Rafalski J.A., Tingey S.V. Genetic analysis using random amplified polymorphic DNA markers. Meth. Enzymol. 218:1993;704-740.
41. Wilson, K., 1994. Preparation of genomic DNA from bacteria. In: Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., Struhl, K. (Eds.), Current Protocols in Molecular Biology, vol. 1. Wiley, New York, pp. 2.4.1-2.4.2.