Nucleotide sequence and genome organization of Cucumber yellows virus, a member of the genus Crinivirus

Journal of General Virology

Volumn 84, Issue 4, 2003, Pages 1007-1012

  Hartono, Sedyo ^a,c   Natsuaki, Tomohide ^a   Genda, Yoshikatsu ^b   Okuda, Seiichi ^a  

^a UTSUNOMIYA UNIVERSITY   (Japan)

^b Nihon Horticultural Production Institute   (Japan)

^c GADJAH MADA UNIVERSITY   (Indonesia)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; HEAT SHOCK PROTEIN 70; HELICASE; METHYLTRANSFERASE; PAPAIN; POLYPROTEIN; PROTEINASE; RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

CLOSTEROVIRIDAE; CONTROLLED STUDY; CRINIVIRUS; CUCUMBER; CUCUMBER YELLOW VIRUS; FRAMESHIFT MUTATION; GENE SEQUENCE; GENUS; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT VIRUS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; SEQUENCE HOMOLOGY; SHORT SURVEY; VIRUS ISOLATION;

BASE SEQUENCE; CRINIVIRUS; CUCUMIS SATIVUS; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; SEQUENCE ALIGNMENT;

CLOSTEROVIRIDAE; CRINIVIRUS; CUCUMBER YELLOWS VIRUS; CUCUMIS; CUCUMIS SATIVUS; LACTUCA; LETTUCE INFECTIOUS YELLOWS VIRUS; RNA VIRUSES;

EID: 0037387735     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.18605-0     Document Type: Short Survey

References (36)

1. Agranovsky, A. A. (1996). Principles of molecular organization, expression, and evolution of closteroviruses: over the barriers. Adv Virus Res 47, 119-159.
2. Agranovsky, A. A., Boyko, V. P., Karasev, A. V., Koonin, E. V. & Dolja, V. V. (1991). Putative 65 kDa protein of beet yellows closterovirus is a homologue of HSP70 heat shock proteins. J Mol Biol 217, 603-610.
3. Agranovsky, A. A., Koonin, E. V., Boyko, V. P., Maiss, E., Frotschl, R., Lunina, N. A. & Atabekov, J. G. (1994). Beet yellows closterovirus: complete genome structure and identification of a leader papain-like thiol protease. Virology 198, 311-324.
4. Agranovsky, A. A., Folimonova, S. Y., Folimonov, A. S., Denisenko, O. N. & Zinovkin, R. A. (1997). The beet yellows closterovirus p65 homologue of HSP70 chaperones has ATPase activity associated with its conserved N-terminal domain but does not interact with unfolded protein chains. J Gen Virol 78, 535-542.
5. Bruenn, J. A. (1991). Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases. Nucleic Acids Res 19, 217-226.
6. Celix, A., Lopez-Sese, A., Almarza, N., Gomez-Guillamon, M. L. & Rodriguez-Cerezo, E. (1996). Characterization of cucurbit yellow stunting disorder virus, a Bemisia tabaci-transmitted closterovirus. Phytopathology 86, 1370-1376.
7. Coutts, R. H. & Coffin, R. S. (1996). Beet pseudo-yellows virus is an authentic closterovirus. Virus Genes 13, 179-181.
8. Dolja, V. V., Boyko, V. P., Agranovsky, A. A. & Koonin, E. V. (1991). Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184, 79-86.
9. Duffus, J. E. (1965). Beet pseudo-yellows virus, transmitted by the greenhouse whitefly, Trialeurodes vaporariorum. Phytopathology 55, 450-453.
10. Duffus, J. E., Larsen, R. C. & Liu H.-Y. (1986). Lettuce infectious yellows virus - a new type of whitefly-transmitted virus. Phytopathology 76, 97-100.
11. Duffus, J. E., Liu, H.-Y. & Wisler, G. C. (1996a). Tomato infectious chlorosis virus - a new clostero-like virus transmitted by Trialeurodes vaporariorum. Eur J Plant Pathol 102, 219-226.
12. Duffus, J. E., Liu H.-Y., Wisler, G. C. & Li, R. H. (1996b). Lettuce chlorosis virus - a new whitefly-transmitted closterovirus. Eur J Plant Pathol 102, 591-596.
13. Gorbalenya, A. E. & Koonin, E. V. (1993). Helicase: amino acid sequence comparisons and structure-function relationship. Curr Opin Struct Biol 3, 419-429.
14. Jelkmann, W., Fechtner, B. & Agranovsky, A. A. (1997). Complete genome structure and phylogenetic analysis of little cherry virus, a mealybug-transmissible closterovirus. J Gen Virol 78, 2067-2071.
15. Karasev, A. V., Boyko, V. P., Gowda, S. & 10 other authors (1995). Complete sequence of the citrus tristeza virus RNA genome. Virology 208, 511-520.
16. Karasev, A. V., Nikolaeva, O. V., Mushegian, A. R., Lee, R. F. & Dawson, W. O. (1996). Organization of the 3-terminal half of beet yellow stunt virus genome and implications for the evolution of closteroviruses. Virology 221, 199-207.
17. Klaassen, V. A., Boeshore, M. L., Koonin, E. V., Tian, T. & Falk, B. W. (1995). Genome structure and phylogenetic analysis of lettuce infectious yellows virus, a whitefly-transmitted, bipartite closterovirus. Virology 208, 99-110.
18. Koonin, E. V. (1991). The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol 72, 2197-2206.
19. Koonin, E. V. & Dolja, V. V. (1993). Evolution and taxonomy of positive- strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28, 375-430.
20. Kozak, M. (1986). Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44, 283-292.
21. Liu, H.-Y. & Duffus, J. E. (1990). Beet pseudo-yellows virus: purification and serology. Phytopathology 55, 866-869.
22. Liu, H.-Y., Wisler, G. C. & Duffus, J. E. (2000). Particle lengths of whitefly-transmitted criniviruses. Plant Dis 84, 803-805.
23. Livieratos, I. C., Avgelis, A. D. & Coutts, R. H. A. (1999). Molecular characterization of the cucurbit yellow stunting disorder virus coat protein gene. Phytopathology 89, 1050-1055.
24. Martelli, G. P., Agranovsky, A. A., Bar-Joseph, M. & 15 other authors (2000). Closteroviridae. In Virus Taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses, pp. 943-964. Edited by M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & R. B. Wickner. San Diego: Academic Press.
25. Peremyslov, V. V., Hagiwara, Y. & Dolja, V. V. (1999). HSP70 homolog functions in cell-to-cell movement of a plant virus. Proc Natl Acad Sci U S A 96, 14771-14776.
26. Pio-Ribeiro, G., Winter, S., Jarrett, T. L., Demski, J. W. & Hamilton, R. I. (1996). Detection of sweet potato virus diseased-associated closterovirus in a sweet potato accession in the United States. Plant Dis 80, 551-554.
27. Roossinck, M. J., Bujarski, J., Ding, S. W., Hajimorad, R., Hanada, K., Scott, S. & Tousignant, M. (2000). Bromoviridae. In Virus Taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses, pp. 923-935. Edited by M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & R. B. Wickner. San Diego: Academic Press.
28. Rozanov, M. N., Koonin, E. V. & Gorbalenya, A. E. (1992). Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J Gen Virol 73, 2129-2134.
29. Salazar, L. F., Mller, G., Lazarte, V., Querci, M., Zapata, J. L. & Owen, R. A. (2000). Potato yellow vein virus: its host range, distribution in South America and identification as a crinivirus transmitted by Trialeurodes vaporariorum. Ann Appl Biol 137, 7-19.
30. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
31. Tian, T., Soong, J., Wisler, G. C., Duffus, J. E. & Falk, B. W. (1996). Generation and cloning of specific cDNAs corresponding to four whitefly-transmitted viruses using RT-PCR and degenerate oligonucleotide primers corresponding to the closterovirus gene encoding the heat shock protein 70 homolog. Phytopathology 86, 1167-1173.
32. Wisler, G. C., Liu, H.-Y., Klaassen, V. A., Duffus, J. E. & Falk, B. W. (1996). Tomato infectious chlorosis virus has a bipartite genome and induces phloem-limited inclusions characteristic of the closteroviruses. Phytopathology 86, 622-626.
33. Wisler, G. C., Duffus, J. E., Liu, H.-Y. & Li, R. H. (1998a). Ecology and epidemiology of whitelly- transmitted closteroviruses. Plant Dis 82, 270-280.
34. Wisler, G. C., Li, R. H., Liu, H.-Y., Lowry, D. S. & Duffus, J. E. (1998b). Tomato chlorosis virus: a new whitefly-transmitted, phloem-limited, bipartite closterovirux of tomato. Phytopathology 88, 402-409.
35. Yamashita, S., Doi, Y., Yora, K. & Yoshino, M. (1979). Cucumber yellows virus: its transmission by the greenhouse whitefly, Trialeurodes vaporariorum (Westwood), and the yellowing disease of cucumber and muskmelon caused by the virus. Ann Phytopathol Soc Jpn 45, 484-496.
36. Zenbayashi, R., Shimazaki, Y. & Shibukawa, S. (1988). Some properties of cucumber yellows virus occurred on cucurbitaceous crops in Japan. Abstr Intl Congr Plant Pathol 5th, Kyoto, Japan 50, I-1-24.