A mathematical model accounting for the organization in multiplets of the genetic code

BioSystems

Volumn 69, Issue 1, 2003, Pages 1-13

  Sciarrino, A ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Crystal basis tensor operators; Genetic code; Synonymous codons; Translation errors

Indexed keywords

AMINO ACID; NUCLEOTIDE;

GENETICS;

AMINO ACID SEQUENCE; ANALYTICAL ERROR; ARTICLE; CODON; CRYSTAL STRUCTURE; EUKARYOTE; GENE STRUCTURE; GENETIC CODE; GENETIC ORGANIZATION; GENETIC STABILITY; HUMAN; MATHEMATICAL MODEL; MITOCHONDRION; RNA TRANSLATION;

EUKARYOTA;

EID: 0037377005     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0303-2647(02)00159-4     Document Type: Article

References (22)

1. Chiusano M.L., Frappat L., Sciarrino A., Sorba P., Codon usage correlations and crustal basis model of the genetic code. Europhys. Lett. 55:2001;287.
2. Davies B.K., Evolution of the genetic code. Prog. Biophys. Mol. Biol. 72:1999;157.
3. Di Giulio M., On the origin of genetic code. J. Theor. Biol. 187:1997;573.
4. Di Giulio M., Medugno M., The historical factor: the biosynthetic relationships between amino acids and their physicochemical properties in the origin of genetic code. J. Mol. Evol. 46:1998;615.
5. Epstein C.J., Role of the amino-acid "code" and of selection for conformation in the evolution of proteins. Nature. 210:1966;25.
6. Frappat L., Sciarrino A., Sorba P., A crystal basis model of the genetic code. Phys. Lett. A. 250:1998;214.
7. Frappat L., Sciarrino A., Sorba P., Crystalizing the genetic code. J. Biol. Phys. 27:2001a;1.
8. Frappat L., Sciarrino A., Sorba P., Predictions of physico-chemical properties of amino acids from genetic code. J. Biol. Phys. 28:2001b;17.
9. Freeland S.J., Hurst L.D., The genetic code is one in a million. J. Mol. Evol. 47:1998;238.
10. Friedman S.M., Weinstein I.B., Lack of fidelity in the translation of synthetic polyribonucleotides. Proc. Natl. Acad. Sci. U.S.A. 52:1964;988.
11. Goldberg A.L., Wittes R.E., Genetic code: Aspects of organization organization. Science. 153:1966;420.
12. Jestin J.L., Kempf A., Chain termination codons and polymerase-induced frameshift mutations. FEBS Lett. 419:1997;153.
13. Jones D.T., Taylor W.R., Thornton J.M., The rapid generation of mutation data matrices from protein sequences. CABIOS. 8:1992;275.
14. Judson O.P., Haydon D., The genetic code: what is it good for? An analysis of the effects of selection pressure on genetic codes. J. Mol. Evol. 49:1999;539.
15. Kashiwara M., Crystallizing the. q -analogue of universal enveloping algebras Commun. Math. Phys. 133:1990;249.
16. Konopel'chenko B.G., Rumer Yu.B., Classification of codons in the genetic code. Translated from Doklady Akademi Nauk SSSR. 223(2):1975;471.
17. q→0(sl(2)) J. Math. Phys. 41:2000;5735.
18. Nakamura Y., Gojobori T., Ikemura T., Codon usage tabulated from the international DNA sequence databases: Status for the year 2000. Nucleic Acids Res. 28:2000;292.
19. Shimizu M., Molecular basis for the genetic code. J. Mol. Evol. 18:1982;297.
20. Sonneborn, T.M., 1965. Degeneracy of the genetic code: Extent, nature and genetic implications. In: Bryson, V., Vogel, H.J. (Eds.), Evolving Genes and Proteins. Academic Press, New York, p. 377.
21. Woese C.R., On the evolution of the genetic code. Proc. Natl. Acad. Sci. U.S.A. 54:1965;1546.
22. Woese, C.R., 1967. The Genetic Code. Harper and Row, New York.