Occan, a novel transposon on the Fot1 family, is ubiquitously found in several Magnaporthe grisea isolates

Current Genetics

Volumn 42, Issue 6, 2003, Pages 322-331

  Kito, Hideki ^a   Takahashi, Yosuke ^a   Sato, Junko ^a   Fukiya, Satoru ^a   Sone, Teruo ^a   Tomita, Fusao ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Class II element; FOT1 family; Rice blast disease; Transposon

Indexed keywords

DINUCLEOTIDE; DNA FRAGMENT; FOT1 PROTEIN; OCCAN; TRANSPOSASE; UNCLASSIFIED DRUG;

CHROMOSOME; CONTROLLED STUDY; DNA FLANKING REGION; FUNGUS ISOLATION; GENE DELETION; GENE EXPRESSION; GENE INSERTION; INTRON; INVERTED REPEAT; MAGNAPORTHE GRISEA; MUTANT; NONHUMAN; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PROTEIN FAMILY; PULSED FIELD GEL ELECTROPHORESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; RICE BLAST; SOUTHERN BLOTTING; TRANSPOSON; VIRULENCE;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA TRANSPOSABLE ELEMENTS; MAGNAPORTHE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; TRANSPOSASES;

FUNGI; MAGNAPORTHE GRISEA; MYXOGASTRIA;

EID: 0037357006     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-002-0365-0     Document Type: Review

References (40)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Ballance DJ (1986) Sequences important for gene expression in filamentous fungi. Yeast 2:229-236
3. Daboussi MJ (1997) Fungal transposable elements and genome evolution. Genetica 100:253-260
4. Daboussi MJ, Langin T, Brygoo Y (1992) Fot1, a new family of fungal transposable elements. Mol Gen Genet 232:12-16
5. Dobinson KF, Harris RE, Hamer JE (1993) Grasshopper, a long terminal repeat (LTR) retroelement in the phytopathogenic fungus Magnaporthe grisea. Mol Plant-Microbe Interact 6:114-126
6. Enkerli J, Bhatt G, Covert SF (1997) Nht1, a transposable element cloned from a dispensable chromosome in Neetria haematococca. Mol Plant-Microbe Interact 10:742-749
7. Farman ML, Tosa Y, Nitta N, Leong SA (1996a) MAGGY, a retrotransposon in the genome of the rice blast fungus Magnaporthe grisea. Mol Gen Genet 251:665-674
8. Farman ML, Taura S, Leong SA (1996b) The Magnaporthe grisea DNA fingerprinting probe MGR586 contains the 3′ end of an inverted repeat transposon. Mol Gen Genet 251:675-681
9. Farman ML, Eto Y, Nakao T, Tosa Y, Nakayashiki H, Mayama S, Leong SA (2002) Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Mol Plant-Microbe Interact 15:6-16
10. Fukiya S, Kodama M, Kito H, Sone T, Tomita F (2001) Establishment of a new cross of the rice blast fungus derived from Japanese differential strain Ina168 and hermaphroditic rice pathogen Guy11. Biosci Biotechnol Biochem 65:1464-1473
11. Hamer JE, Farrall L, Orbach MJ, Valent B, Chumley FG (1989) Host species-specific conservation of a family of repeated DNA sequences in the genome of a fungal plant pathogen. Proc Natl Acad Sci USA 86:9981-9985
12. Kachroo P, Leong SA, Chattoo BB (1994) Pot2, an inverted repeat transposon from the rice blast fungus Magnaporthe grisea. Mol Gen Genet 245:339-348
13. Kachroo P, Leong SA, Chattoo BB (1995) Mg-SINE: a short interspersed nuclear element from the rice blast fungus, Magnaporthe grisea. Proc Natl Acad Sci USA 92:11125-11129
14. Kang S (2001) Organization and distribution pattern of MGLR-3, a novel retrotransposon in the rice blast fungus Magnaporthe grisea. Fungal Genet Biol 32:11-19
15. Kang S, Lebrun MH, Farrall L, Valent B (2001) Gain of virulence caused by insertion of a Pot3 transposon in Magnaporthe grisea avirulence gene. Mol Plant-Microbe Interact 14:671-674
16. Kempken F, Kück U (1996) restless, an active Ac-like transposon from the fungus Tolypocladium inflatum: structure, expression, and alternative RNA splicing. Mol Cell Biol 16:6563-6572
17. Kempken F, Kück U (1998) Transposons in filamentous fungi-facts and perspectives. BioEssays 20:652-659
18. Kempken F, Kück U (2000) Tagging of a nitrogen pathway-specific regulator gene in Tolypocladium inflatum by the transposon Restless. Mol Gen Genet 263:302-308
19. Kimura M, Ymaguchi I (1998) Convergent transcription units and their promoters at both ends of Pot2, an inverted repeat transposon from the rice blast fungus. J Biochem 124:268-273
20. Levis C, Fortini D, Brygoo Y (1997) Flipper, a mobile Fot1-like transposable element in Botrytis cinerea. Mol Gen Genet 254:674-680
21. Migheli Q, Laugé R, Davière JM, Gerlinger C, Kaper F, Langin T, Daboussi MJ (1999) Transposition of the autonomous Fot1 element in the filamentous fungus Fusarium oxysporum. Genetics 151:1005-1013
22. Nakayashiki H, Matsuo H, Chuma I, Ikeda K, Betsuyaku S, Kusaba M, Tosa Y, Mayama S (2001) Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains an extra domain between the nucleocapsid and protease domains. Nucleic Acids Res 29:4106-4113
23. Nishimura M, Hayashi N, Jwa NS, Lau GW, Hamer JE (2000) Insertion of the LINE retrotransposon MGL causes a conidiophore pattern mutation in Magnaporthe grisea. Mol Plant-Microbe Interact 13:892-894
24. Nyyssönen E, Amutan M, Enfield L, Stubbs J, Dunn-Coleman NS (1996) The transposable element Tan1 of Aspergillus niger ver. awamori, a new member of the Fot1 family. Mol Gen Genet 253:50-56
25. Orbach MJ (1994) A cosmid with a HyR marker for fungal library construction and screening. Gene 150:159-162
26. Orbach MJ, Chumley FG, Valent B (1996) Electrophoretic karyotypes of Magnaporthe grisea pathogens of diverse grasses. Mol Plant-Microbe Interact 9:261-271
27. Panaccione DG, Pitkin JW, Walton JD, Annis SL (1996) Transposon-like sequences at the TOX2 locus of the plant-pathogenic fungus Cochliobolus carbonum. Gene 176:103-109
28. Pöggeler S (1997) Sequence characteristics within nuclear genes from Sordaria macrospora. Fungal Genet Newsl 44:41-44
29. Robertson HM (1996) Members of the pogo superfamily of DNA-mediated transposons in the human genome. Mol Gen Genet 252:761-766
30. Rossman AY, Howard RJ, Valent B (1990) Pyricularia grisea, the correct name for the rice blast disease fungus. Mycologia 82:509-512
31. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
32. Shull V, Hamer JE (1996) Rearrangements at a DNA-fingerprint locus in the rice blast fungus. Curr Genet 30:263-271
33. Sone T, Suto M, Tomita F (1993) Host species-specific repetitive DNA sequence in the genome of Magnaporthe grisea, the rice blast fungus. Biosci Biotechnol Biochem 57:1228-1230
34. Sone T, Abe T, Suto M, Tomita F (1997) Identification and characterization of a karyotypic mutation in Magnaporthe grisea. Biosci Biotechnol Biochem 61:81-86
35. Talbot NJ, Salch YP, Ma M, Hamer JE (1993) Karyotypic variation within clonal lineages of the rice blast fungus, Magnaporthe grisea. Appl Environ Microbiol 59:585-593
36. Talbot NJ, MaCafferty HRK, Ma M, Moore K, Hamer JE (1997) Nitrogen starvation of the rice blast fungus Magnaporthe grisea may act as an environmental cue for disease symptom expression. Physiol Mol Plant Pathol 50:179-195
37. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
38. Van Luenen HGAM, Colloms SD, Plasterk RHA (1994) The mechanism of transposition of Tc3 in C. elegans. Cell 79:293-301
39. Villalba F, Lebrun MH, Hua-Van A, Daboussi MJ, Grosjean-Cournoyer MC (2001) Transposon impala, a novel tool for gene tagging in the rice blast fungus Magnaporthe grisea. Mol Plant-Microbe Interact 14:308-315
40. Wang H, Hartswood E, Finnegan DJ (1999) Pogo transposase contains a putative helix-turn-helix DNA binding domain that recognises a 12 bp sequence within the terminal inverted repeats. Nucleic Acids Res 27:455-461