Acetylacetone-cleaving enzyme Dke1: A novel C-C-bond-cleaving enzyme from Acinetobacter johnsonii

Biochemical Journal

Volumn 369, Issue 3, 2003, Pages 573-581

  Straganz, Grit D ^a   Glieder, Anton ^a   Brecker, Lothar ^a,b   Ribbons, Douglas W ^a   Steiner, Walter ^a  

^a GRAZ UNIVERSITY OF TECHNOLOGY   (Austria)

^b RESEARCH CENTER BORSTEL   (Germany)

Author keywords

Acetylacetone degradation pathway; Dicarbonyl cleavage; Diketone cleavage; Iron cofactor; Oxygenase

Indexed keywords

AMINO ACIDS; CATALYST ACTIVITY; CHARACTERIZATION; CHEMICAL BONDS; ESCHERICHIA COLI; TOXICITY;

MICROBIAL DEGRARDATION;

ENZYMES;

ACETIC ACID; ACETYLACETONE; DIKETONE; IRON; METHYLGLYOXAL; OXYGENASE; PROTEIN; PROTEIN DKE1; UNCLASSIFIED DRUG;

ACINETOBACTER; AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; CARBON SOURCE; CATALYSIS; CLONE; ESCHERICHIA COLI; GENE; MICHAELIS CONSTANT; MICROBIAL DEGRADATION; NONHUMAN; OXYGEN CONSUMPTION; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN EXPRESSION;

ACETATES; ACINETOBACTER; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; CLONING, MOLECULAR; IRON; MOLECULAR SEQUENCE DATA; OXYGEN; OXYGENASES; PENTANONES; PYRUVALDEHYDE; SUBSTRATE SPECIFICITY;

ACINETOBACTER; ACINETOBACTER JOHNSONII; ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0037325484     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20021047     Document Type: Article

References (31)

1. Ballantyne, B. and Cawley, T. J. (2001) 2,4-Pentanedione. J. Appl. Toxicol. 21, 165-171
2. Thurston, R. V., Gilfoil, T. A., Meyn, E. L., Zajdel, R. K., Aoki, T. I. and Veith, G. D. (1985) Comparative toxicity of ten organic chemicals to ten common aquatic species. Water Res. 19, 1145-1155
3. Bringmann, G. and Kuehn, R. (1980) Comparison of the toxicity thresholds of water pollutants to bacteriae, algae and protozoa in the cell multiplication inhibition test. Water Res. 14, 231-241
4. Daugherty, M. L. (1988) 2,4-Pentanedione. Chemical Hazard Information Profile. Office of Toxic Substances, US Environmental Protection Agency, Washington DC
5. Sakai, K., Hamada, N. and Watanabe, Y. (1986) Degradation mechanism of poly(vinyl alcohol) by successive reaction of secondary alcohol oxidase and β-diketone hydrolase from Pseudomonas sp. Agric. Biol. Chem. 50, 989-996
6. Kawagoshi, Y. and Fujita, M. (1998) Purification and properties of the polyvinyl alcohol degrading enzyme 2,4-pentanedione hydrolase obtained from Pseudomonas vescularis var. povalyticus PH. World J. Microbiol. Biotechnol. 14, 95-100
7. Mandl, T. (2001) Microbial β-ketolases, Ph.D. Thesis, Graz University of Technology, Graz
8. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 277, 680-685
9. Beechey, R. B. and Ribbons, D. W. (1971) Oxygen electrode measurements. In Methods in Microbiology, vol. 6B (Norris, J. R. and Ribbons, D. W., eds.), pp. 29-52, Academic Press, London
10. Brecker, L. and Ribbons, D. W. (2000) Biotransformations monitored in situ by proton nuclear magnetic resonance spectroscopy. Trends Biotechnol. 18, 197-202
11. Guéron, M., Plateau, P. and Decorps, M. (1991) Solvent signal suppression in NMR. Progr. NMR Spectrosc. 23, 135-209
12. Hore, J. P (1989) Solvent suppression. Methods Enzymol. 176, 64-77
13. Bubb, W. A. (1997) NMR characterization of 3,6-dioxa-8-azabicyclo3.2.1octanes and N-tris(hydroxymethyl)methylalanine formed from methylglyoxal in Tris buffer. Magn. Reson. Chem. 35, 191-198
14. Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn, Cold Spring Harbor Press, New York
15. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402
16. Sandell, E. B. (1950) Colorimetric Determination of Traces of Metals, Interscience Publishers, New York
17. Vallee, B. L. and Gibson, J. G. (1948) An improved dithizone method for the determination of small quantities of zinc in blood and tissue samples. J. Biol. Chem. 176, 435-443
18. Galas, D. J., Eggert, M. and Waterman, M. S. (1985) Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli. J. Mol. Biol. 186, 117-128
19. Ringquist, S., Shinedling, S., Barrick, D., Green, L., Binkley, J., Stormo, G. D. and Gold, L. (1992) Translation initiation in Escherichia coli: sequences within the ribosome-binding site. Mol. Microbiol. 6, 1219-1229
20. Makinen, K. K. and Tenovuo, J. (1982) Observations on the use of guaiacol and 2,2′-azino-di(3-ethylbenzthiazoline-6-sulfonic acid) as peroxidase substrates. Anal. Biochem. 126, 100-108
21. Seltzer, S. (1981) Nuclear magnetic resonance paramagnetic ion-induced relaxation method to differentiate between 1,3-diketo and 1,3-keto-enol isomers. J. Org. Chem. 46, 2643-2650
22. Guthrie, J. P. and Cossar, J. (1986) The chlorination of acetone: a complete kinetic analysis. Can. J. Chem. 64, 1250-1266
23. Dawson, R. M. C., Elliot, W. H. and Jones, K. M. (1969) Data of Biochemical Research, Clarendon Press, Oxford
24. Broderick, J. B. (1999) Catechol dioxygenases. In Essays in Biochemistry, vol. 34 (Ballou, D. P., ed.), pp. 173-189, Portland Press, London
25. von Lintig, J. and Vogt, K. (2000) Filling the gap in vitamin A research. Molecular identification of an enzyme cleaving β-carotene to retinal. J. Biol. Chem. 275, 11915-11920
26. Kamoda, S., Terada, T. and Saburi, Y. (1997) Purification and some properties of lignostilbene-α, β-dioxygenase isozyme IV from Pseudomonas paucimobilis TMY1009. Biosci. Biotechnol. Biochem. 61, 1575-1576
27. Hopper, D. J. and Kaderbhai, M. A. (1999) 2,4′-Dihydroxyacetophenone dioxygenase (EC 1.13.11.41) from Alcaligenes sp. 4HAP: a novel enzyme with an atypical dioxygenase sequence. Biochem. J. 344, 397-402
28. Myers, R. W., Wray, J. W., Fish, S. and Abeles, R. H. (1993) Purification and characterization of an enzyme involved in oxidative carbon-carbon bond cleavage reactions in the methionine salvage pathway of Klebsiella pneumoniae. J. Biol. Chem. 268, 24785-24791
29. Wray, J. W. and Abeles, R. H. (1995) The methionine salvage pathway in Klebsiella pneumoniae and rat liver. Identification and characterization of two novel dioxygenases. J. Biol. Chem. 270, 3147-3153
30. Fusetti, F., Schroter, K. H., Steiner, R. A., van Noort, P. I., Pijning, T., Rozeboom, H. J., Kalk, K. H., Egmond, M. R. and Dijkstra, B. W. (2002) Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus. Structure 10, 259-268
31. Al-Mjeni, F., Ju, T., Pochapsky, T. C. and Maroney, M. (2002) XAS investigation of the structure and function of Ni in acireductone dioxygenase. Biochemistry 41, 6761-6769