Department of a universal probe for electronic microarray and its application in characterization of the Staphylococcus aureus polC gene

Journal of Molecular Diagnostics

Volumn 5, Issue 1, 2003, Pages 28-33

  Cooper, Kara L F ^a   Goering, Richard V ^a  

^a CREIGHTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; FLUORESCENT DYE; OLIGONUCLEOTIDE; PROTEIN POLC; STREPTAVIDIN; UNCLASSIFIED DRUG; BACTERIAL DNA; DNA DIRECTED DNA POLYMERASE; POLC PROTEIN, BACTERIA;

ACCURACY; AMPLICON; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; BIOTECHNOLOGY; BIOTINYLATION; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DNA HYBRIDIZATION; DNA MICROARRAY; DNA SEQUENCE; ELECTRONICS; FEASIBILITY STUDY; GEL; GENE IDENTIFICATION; GENE LOCUS; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; REPORTER GENE; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; STAPHYLOCOCCUS AUREUS; SYNTHESIS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; OLIGONUCLEOTIDE PROBE;

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS; STAPHYLOCOCCUS AUREUS;

BACTERIAL PROTEINS; BASE SEQUENCE; DNA, BACTERIAL; DNA-DIRECTED DNA POLYMERASE; GENES, BACTERIAL; GENES, REPORTER; HUMANS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; STAPHYLOCOCCUS AUREUS;

EID: 0037322640     PISSN: 15251578     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1525-1578(10)60448-5     Document Type: Article

References (13)

1. The International SNP Map Working Group: A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 2001, 409:928-933
2. van Belkum A, Struelens M, de Visser A, Verbrugh H, Tibayrenc M: Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology. Clin Microbiol Rev 2001, 14:547-560
3. Pollak ES, Feng L, Ahadian H, Fortina P: Microarray-based genetic analyses for studying susceptibility to arterial and venous thrombotic disorders. Ital Heart J 2001, 2:568-572
4. Nagan N, O'Kane DJ: Validation of a single nucleotide polymorphism genotyping assay for the human serum paraoxonase gene using electronically active customized microarrays. Clin Biochem 2001, 34:589-592
5. Evans JG, Lee-Tataseo C: Determination of the factor V Leiden single nucleotide polymorphism in a commercial clinical laboratory setting using NanoChip microelectronic array technology. Clin Chem 2002, 48:1406-1411
6. NanoChip Standard SNP Research Application Note: Amplicon-down format with thermal discrimination. Doc. No. 140083.2. San Diego, CA, Nanogen, Inc, 2002
7. Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG: Multilocus sequence typing for the characterization of methicillin-resistant (MRSA) and methicillin-susceptible (MSSA) clones of Staphylococcus aureus. J Clin Microbiol 2000, 38:1008-1015
8. BLAST: (Basic Local Alignment Search Tool), National Center for Biotechnology Information, http://www.ncbi.nlm.nih.gov/BLAST/
9. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410
10. Drancourt M, Bollet C, Carlioz A, Martelin J, Gayral P, Raoult D: 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol 2000, 38:3623-3630
11. Stewart BA, Johnson AP, Woodford N: Relationship between mutations in parC and gyrA of clinical isolates of Streptococcus pneumoniae and resistance to ciprofloxacin and grepafloxacin. J Med Microbiol 1999, 48:1103-1106
12. Shopsin B, Gomez M, Montgomery SO, Smith DH, Waddington M, Dodge DE, Bost DA, Riehman M, Naidich S, Kreiswirth BN: Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains. J Clin Microbiol 1999, 37:3556-3563
13. Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG: Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J Clin Microbiol 2000, 38:1008-1015