A three-dimensional model of suppressor of cytokine signalling 1 (SOCS-1)

Protein Engineering

Volumn 16, Issue 2, 2003, Pages 115-124

  Giordanetto, Fabrizio ^a   Kroemer, Romano T ^a,b  

^a QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

^b Discovery Research Oncology   (Italy)

Author keywords

Homology modelling; JAK STAT pathway; Signal transduction; SOCS

Indexed keywords

PROTEIN; PROTEIN TYROSINE KINASE; STAT PROTEIN; SUPPRESSOR OF CYTOKINE SIGNALING 1; UNCLASSIFIED DRUG;

ARTICLE; COMPLEX FORMATION; ENZYME ACTIVITY; MODEL; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; SIGNAL TRANSDUCTION; SURFACE PROPERTY; TECHNIQUE;

EID: 0037317179     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/proeng/gzg015     Document Type: Article

References (75)

1. Adams, T.E., Hansen, J.A., Starr, R., Nicola, N.A., Hilton, D.J. and Billestrup, N. (1998) J. Biol. Chem., 273, 1285-1287.
2. Aloy, P., Moont, G., Gabb, H.A., Querol, E., Aviles, F.X. and Sternberg, M.J.E. (1998) Proteins, 33, 535-549.
3. Aso, T., Lane, W.S., Conaway, J.W. and Conaway, R.C. (1995) Science, 269, 1439-1443.
4. Aso, T., Haque, D., Barstead, R.J., Conaway, R.C. and Conaway, J.W. (1996) EMBO J., 15, 5557-5566.
5. Bairoch, A. and Apweiler, R. (2000) Nucleic Acids Res., 28, 45-48.
6. Becker, S., Groner, B. and Muller, W. (1998) Nature, 394, 145-151.
7. Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) Nucleic Acids Res., 28, 235-242.
8. Bradsher, J.N., Jackson, K.W., Conaway, R.C. and Conaway, J.W. (1993) J. Biol. Chem., 268, 25587-25593.
9. Chen, X., Vinkemeier, U., Zhao, Y., Jeruzalmi, D., Darnell, J.E., Jr and Kuriyan, J. (1998) Cell, 93, 827-839.
10. Claessens, M., Van Cutsem, E., Lasters, I. and Wodak, S. (1989) Protein Eng., 2, 335-345.
11. Clamp, M. (1998) Jalview, http://www.ebi.ac.uk/~michele/.
12. Conaway, J.W., Kamura, T. and Conaway, R.C. (1998) Biochim. Biophys. Acta, 1377, M49-M54.
13. De Sepulveda, P., Ilangumaran, S. and Rottapel, R. (2000) J. Biol. Chem., 275, 14005-14008.
14. Diamond, P., Doran, P., Brady, H.R. and McGinty A. (2000) J. Nephrol., 13, 9-14.
15. Duan, D.R., Humphrey, J.S., Chen, D.Y.T., Weng, Y., Sukegawa, J., Lee, S., Gnarra, J.R., Linehan, W.M. and Klausner, R.D. (1995a) Proc. Natl Acad. USA, 92, 6459-6463.
16. Duan, D.R., Pause, A., Burgess, W.H., Aso, T., Chen, D.Y.T., Garrett, K.P., Conaway, R.C., Conaway, J.W., Linehan, W.M. and Klausner, R.D. (1995b) Science, 269, 1402-1406.
17. Endo, T.A., Masuhara, M., Yokouchi, M. and Yoshimura, A. (1997) Nature, 387, 921-924.
18. Fischer, D. and Eisenberg, D. (1996) Protein Sci., 5, 947-955.
19. Gibrat, J.F., Madej, T. and Bryant, S.H. (1996) Curr. Opin. Struct. Biol., 6, 377-385.
20. Goodford, P.J. (1985) J. Med. Chem., 28, 849-857.
21. Hansen, J.A., Lindberg, K., Hilton, D.J., Nielsen, J.H. and Billestrup, N. (1999) Mol. Endocrinol., 13, 1832-1843.
22. Hilton, D.J., Richardson, R.T., Alexander, W.S. and Nicola, N.A. (1998) Proc. Natl Acad. Sci. USA, 95, 114-119.
23. Holm, L. and Sander, C. (1993) J. Mol. Biol., 233, 123-128.
24. Holm, L. and Sander, C. (1996) Science, 273, 595-602.
25. Hubbard, S.R. (1997) EMBO J., 18, 5572-5581.
26. Imada, K. and Leonard, W.J. (2000) Mol. Immunol., 37, 1-11.
27. Jones, D.T. (1999a) J. Mol. Biol., 292, 195-202.
28. Jones, D.T. (1999b) J. Mol. Biol., 287, 797-815.
29. Jones, T.A. and Thirup, S. (1986) EMBO J., 5, 819-822.
30. Kaelin, W.G., Jr and Maher, E.R. (1998) Trends Genet., 14, 423-427.
31. Kamizono, S., Hanada, T., Yasukawa, H., Minoguchi, S. and Kato, R. (2001) J. Biol. Chem., 16, 12530-12538.
32. Kamura, T., Sato, S., Haque, D., Liu, L., Kaelin, W.G., Conaway, R.C. and Conaway, J.W. (1998) Gen. Dev., 12, 3872-3881.
33. Kamura, T., Burian, D., Yan, Q., Schmidt, S.L., Lane, W.S., Querido, E., Branton, P.E., Shilatifard, A., Conaway, R.C. and Conaway, J.W. (2001) J. Biol. Chem., 276, 29748-29753.
34. Kelley, L.A., MacCullum, R.M., Sternberg, M.J.E. (2000) J. Mol. Biol., 299, 501-522.
35. Kibel, A., Iliopoulos, O., DeCaprio, J.A. and Kaelin, W.G., Jr. (1995) Science, 269, 1444-1446.
36. Kishida, T., Stackhouse, T.M., Chen, F., Lerman, M.I. and Zbar, B. (1995) Cancer Res., 20, 4544-4548.
37. Kraulis, P.J. (1991) J. Appl. Crystallogr, 24, 946-950.
38. Laskowski, R.A., McArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) J. Appl. Crystallogr., 26, 283-291.
39. Lee, C.H., Komrinos, D., Jacques, S., Margolis, B., Schlessinger, J., Shoelson, S.E. and Kuriyan, J. (1994) Structure, 15, 423-438.
40. Lindauer, K., Loerting, T., Liedl, K.R. and Kroemer, R.T. (2001) Protein Eng., 14, 27-37.
41. Losman, J.A. Chen, X.P., Hilton D. and Rothman, P. (1999) J. Immunol., 162, 3770-3776.
42. Masuhara, M., Sakamoto, H., Matsumoto, A. and Yoshimura, A. (1997) Biochem. Biophys. Res. Commun., 239, 439-446.
43. Maxwell, P.H., Wiesener, M.S., Chang, G.W., Clifford, S.C., Vaux, E.C., Cockman, M.E., Wykoff, C.C., Pugh, C.W., Maher, E.R. and Ratcliffe, P.J. (1999) Nature, 399, 271-275.
44. McMartin, C. and Bohacek, R. (1997) J. Comput. Aid. Mol. Des., 11, 333-344.
45. Minamoto, S., Ikegame, K., Ueno, K. and Kishimoto, T. (1997) Biochem. Biophys. Res. Commun., 237, 79-83.
46. Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia C. (1995) J. Mol. Biol., 247, 536-540.
47. Naka, T., Narazaki, M., Hirata, M. and Kishimoto, T. (1997) Nature, 387, 924-929.
48. Narazaki, M., Fujimoto, M., Matsumoto, T., Morita, Y., Saito, H., Kajita, T., Yoshizaki, K., Naka, T. and Kishimoto, T. (1998) Proc. Natl Acad. Sci. USA, 95, 13130-13134.
49. Nicholls, A. and Honig, B. (1991) J. Comput. Chem., 12, 435-445.
50. Nicholls, A., Sharp, K. and Honig, B. (1991) Proteins, 11, 281-287.
51. Nicholson, S.E., Willson, T.A., Farley, A., Starr, R., Zhang, J.G., Baca, M., Alexander, W.S., Metcalf, D., Hilton, D.J. and Nicola, N.A. (1999) EMBO J., 18, 375-385.
52. Orengo, C.A., Michie, A.D., Jones, S, Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) Structure, 5, 1093-1108.
53. Pascal, S.M., Singer, A.U., Gish, G., Yamazaki, T., Shoelson, S.E., Pawson, T., Kay, L.E. and Forman-Kay, J.D. (1994) Cell, 77, 461-472.
54. Pearlman, D.A., Case, D.A., Caldwell, J.W., Ross, W.S., Cheatham, T.E., DeBolt, S., Ferguson, D., Seibel, G. and Kollman, P. (1995) Comput. Phys. Commun., 91, 1-41.
55. Pezet, A., Favre, H., Kelly, P.A and Edery, M. (1999) J. Biol. Chem., 274, 24497-24502.
56. Rahuel, J., Garcia-Echeverria, C., Furet, P., Strauss, A., Caravatti, G., Fretz, H., Schoepfer, J. and Gay, B. (1998) J. Mol. Biol., 279, 1013-1022.
57. Ram, P.A. and Waxman, D.J. (1999) J. Biol. Chem., 274, 35553-35561.
58. Rost, B. and Sander, C. (1993) J. Mol. Biol., 232, 584-599.
59. Rost, B. and Sander C. (1994) Proteins: Struct. Funct. Genet., 19, 55-77.
60. Rost, B., Sander, C. and Schneider, R. (1994), CABIOS, 10, 53-60.
61. Sakamoto, H. et al. (1998) Blood, 92, 1668-1676.
62. Šali, A. and Blundell, T.L. (1993) J. Mol. Biol., 234, 779-815.
63. Sasaki, A., Yasukawa, H., Suzuki, A., Kamizono, S., Syoda, T., Kinjyo, I., Sasaki, M., Johnston, J.A. and Yoshimura, A. (1999) Genes Cells, 4, 339-351.
64. Shindyalov, I.N. and Bourne, P.E. (1998) Protein Eng., 11, 739-747.
65. Sporri, B., Kovanen, P.E., Yoshimura A. and Leonard, W.J. (2001), Blood, 97, 221-226.
66. Starr, R., Wilson, T.A., Viney, E.M. and Hilton, D.J. (1997) Nature, 387, 917-921.
67. Stebbins, C.E., Kaelin, W.G. and Pavlevich, N.P. (1999) Science, 284, 455-461.
68. Thiele, R., Zimmer, R. and Lengauer, T. (1999) J. Mol. Biol., 290, 757-779.
69. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) Nucleic Acids Res., 22, 4673-4680.
70. Tomic, S., Chugtai, N. and Ali, S. (1999) Mol. Cell. Endocrinol., 158, 45-54.
71. Ungureanu, D., Saharinen, P., Junttila, I., Hilton, D.J. and Silvennoinen, O. (2002) Mol. Cell. Biol., 22, 3316-3326.
72. Yasukawa, H., Misawa, H., Sakamoto, H., Masuhara, M. and Yoshimura, A. (1999) EMBO J., 18, 1309-1320.
73. Yoshimura, A., Ohkubo, T., Kiguchi, T. and Miyajima, A. (1995) EMBO J., 14, 2816-2826.
74. Zhang, J., Farley, A., Nicholson, S.E. and Baca, M. (1999) Proc. Natl Acad. Sci. USA, 96, 2071-2076.
75. Zhang, J. et al. (2001) Proc. Natl Acad. Sci. USA, 98, 13261-13265.