The complete genomic sequence of hepatitis delta virus genotype llb prevalent in Okinawa, Japan

Journal of General Virology

Volumn 84, Issue 2, 2003, Pages 461-464

  Ma, Shao Ping ^a,b   Sakugawa, Hiroshi ^b   Makino, Yoshihiro ^a   Tadano, Masayuki ^b   Kinjo, Fukunori ^b   Saito, Atsushi ^b  

^a OITA UNIVERSITY   (Japan)

^b UNIVERSITY OF THE RYUKYUS   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; VIRUS ANTIGEN; VIRUS RNA;

CONTROLLED STUDY; DELTA AGENT HEPATITIS; GENETIC CODE; GENOTYPE; HEPATITIS DELTA VIRUS; HUMAN; JAPAN; LIVER CIRRHOSIS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PREVALENCE; PRIORITY JOURNAL; REVIEW; RNA STRUCTURE; SPECIES ENDEMICITY; TAIWAN; VIRUS GENOME; VIRUS ISOLATION;

BASE SEQUENCE; GENOME, VIRAL; GENOTYPE; HEPATITIS D; HEPATITIS DELTA VIRUS; HUMANS; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; SEQUENCE ANALYSIS, DNA;

DELTA VIRUS; HEPATITIS DELTA VIRUS; RNA VIRUSES;

EID: 0037311773     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.18762-0     Document Type: Review

References (27)

1. Arakawa, Y., Moriyama, M., Taira, M., Hayashi, N., Tanaka, N., Okubo, H. & Sugitani, M. (2000). Molecular analysis of hepatitis D virus infection in Miyako Island, a small Japanese island. J Viral Hepatitis 7, 375-381.
2. Bergmann, K. F. & Gerin, J. L. (1986). Antigens of hepatitis delta virus in the liver and serum of humans and animals. J Infect Dis 154, 702-706.
3. Bonino, F., Heermann, K. H., Rizzetto, M. & Gerlich, W. H. (1986). Hepatitis delta virus: protein composition of delta antigen and its hepatitis B virus-derived envelope. J Virol 58, 945-950.
4. Casey, J. L., Bergmann, K. F., Brown, T. L. & Gerin, J. L. (1992). Structural requirements for RNA editing in hepatitis delta virus: evidence for a uridine-to-cytidine editing mechanism. Proc Natl Acad Sci U S A 89, 7149-7153.
5. Casey, J. L., Brown, T. L., Colan, E. J., Wingnall, F. S. & Gerin, J. L. (1993). A genotype of hepatitis D virus that occurs in northern South America. Proc Natl Acad Sci U S A 90, 9016-9020.
6. Chomczynski, P. & Sacchi, N. (1987). Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162, 156-159.
7. Gerin, J. L., Casey, J. L. & Purcell, R. H. (2001). Hepatitis delta virus. In Fields Virology, 4th edn, vol. II, pp. 3037-3050. Edited by D. M. Knipe & P. M. Howley. Philadelphia: Lippincott Williams & Wilkins.
8. Hsu, S.-C., Syu, W.-J., Sheen, I.-J., Liu, H.-T., Jeng, K.-S. & Wu, J.-C. (2002). Varied assembly and RNA editing efficiencies between genotype I and II hepatitis D virus and their implications. Hepatology 35, 665-672.
9. Imazeki, F., Omata, M. & Ohto, M. (1991). Complete nucleotide sequence of hepatitis delta virus RNA in Japan. Nucleic Acids Res 19, 5439.
10. Ivaniushina, V., Radjef, N., Alexeeva, M., Gault, E., Semenov, S., Salhi, M., Kiselev, O. & Deny, P. (2001). Hepatitis delta virus genotypes I and II cocirculate in an endemic area of Yakutia, Russia. J Gen Virol 82, 2709-2718.
11. Lai, M. M. C. (1995). The molecular biology of hepatitis delta virus. Annu Rev Biochem 64, 259-286.
12. Lee, C.-M., Changchien, C.-S., Chung, J.-C. & Liaw, Y.-F. (1996). Characterization of a new genotype II hepatitis delta virus from Taiwan. J Med Virol 49, 145-154.
13. Makino, S., Chang, M.-F., Shieh, C.-K., Kamahora, T., Vannier, D. M., Govindarajan, S. & Lai, M. M. C. (1987). Molecular cloning and sequencing of a human hepatitis delta (δ) virus RNA. Nature 329, 343-346.
14. Monjardino, J. (1996). Replication of hepatitis delta virus. J Viral Hepat 3, 163-166.
15. Nakano, T., Shapiro, C. N., Hadler, S. C., Casey, J. L., Mizokami, M., Orito, E. & Robertson, B. H. (2001). Characterization of hepatitis D virus genotype III among Yucpa Indians in Venezuela. J Gen Virol 82, 2183-2189.
16. Nakasone, H., Sakugawa, H., Shokita, H. & 8 other authors (1998). Prevalence and clinical features of hepatitis delta virus infection in the Miyako, Islands, Okinawa, Japan. J Gastroenterol 33, 850-854.
17. Rizzetto, M., Canese, M. G., Arico, S., Crivelli, O., Trepo, C., Bonino, F. & Verme, G. (1977). Immunofluorescence detection of new antigen-antibody system (δ/anti-δ) associated to hepatitis B virus in liver and in serum of HBsAg carriers. Gut 18, 997-1003.
18. Sakugawa, H., Nakasone, H., Shokita, H., Nakayoshi, T., Kinjo, F., Saito, A., Yamashiro, A. & Miyagi, Y. (1995). Seroepidemiological study of hepatitis delta virus infection in Okinawa, Japan. J Med Virol 45, 312-315.
19. Sakugawa, H., Nakasone, H., Shokita, H. & 10 other authors (1997a). Seroepidemiological study on hepatitis delta virus infection in the Irabu Islands, Okinawa, Japan. J Gastroenterol Hepatol 12, 299-304.
20. Sakugawa, H., Nakasone, H., Kawakami, Y. & 12 other authors (1997b). Determination of hepatitis delta virus (HDV)-RNA in asymptomatic cases of HDV infection. Am J Gastroenterol 92, 2232-2236.
21. Sakugawa, H., Nakasone, H., Nakayoshi, T. & 7 other authors (1999). Hepatitis delta virus genotype IIb predominates in an endemic area, Okinawa, Japan. J Med Virol 58, 366-372.
22. Saldanha, J. A., Thomas, H. C. & Monjardino, J. P. (1990). Cloning and sequencing of RNA of hepatitis delta virus isolated from human serum. J Gen Virol 71, 1603-1606.
23. Wang, K.-S., Choo, Q.-L., Weiner, A. J. & 7 other authors (1986). Structure, sequence and expression of the hepatitis delta (δ) viral genome. Nature 323, 508-514.
24. Wang, K.-S., Choo, Q.-L., Weiner, A. J. & 7 other authors (1987). Structure, sequence and expression of the hepatitis delta (δ) virus genome. Nature 328, 456.
25. Weiner, A. J., Choo, Q.-L., Wang, K.-S., Govindarajan, S., Redeker, A. G., Gerin, J. L. & Houghton, M. (1988). A single antigenomic open reading frame of the hepatitis delta virus encodes the epitope(s) of both hepatitis delta antigen polypeptides p24δ and p27δ. J Virol 62, 594-599.
26. Wu, J.-C., Chiang, T.-Z. & Sheen, I.-J. (1998). Characterization and phylogenetic analysis of a novel hepatitis D virus strain discovered by restriction fragment length polymorphism analysis. J Gen Virol 79, 1105-1113.
27. Yang, A., Papaioannou, C., Hadzyannis, S., Thomas, H. & Monjardino, J. (1995). Base changes at positions 1014 and 578 of delta virus RNA in Greek isolates maintain base pair in rod conformation with efficient RNA editing. J Med Virol 47, 113-119.