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Volumn 33, Issue 4, 2003, Pages 801-811

A genome-wide identification of E2F-regulated genes in Arabidopsis

Author keywords

Arabidopsis thaliana; Cell cycle; E2F; Gene expression; Plant; Retinoblastoma

Indexed keywords

CELL CULTURE; DATA MINING; DNA; PLANTS (BOTANY);

EID: 0037298055     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01662.x     Document Type: Article
Times cited : (121)

References (53)
  • 1
    • 0030875132 scopus 로고    scopus 로고
    • RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein
    • Ach, R.A., Durfee, T., Miller, A.B., Taranto, P., Hanley-Bowdoin, L., Zambryski, P.C. and Gruissem, W. (1997) RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein. Mol. Cell Biol. 17, 5077-5086.
    • (1997) Mol. Cell Biol. , vol.17 , pp. 5077-5086
    • Ach, R.A.1    Durfee, T.2    Miller, A.B.3    Taranto, P.4    Hanley-Bowdoin, L.5    Zambryski, P.C.6    Gruissem, W.7
  • 2
    • 0034705570 scopus 로고    scopus 로고
    • DcE2F; a functional plant E2F-like transcriptional activator from Daucus carota
    • Albani, D., Mariconti, L., Ricagno, S., Pitto, L., Moroni, C., Helin, K. and Cella, R. (2000) DcE2F; a functional plant E2F-like transcriptional activator from Daucus carota. J. Biol. Chem. 275, 19258-19267.
    • (2000) J. Biol. Chem. , vol.275 , pp. 19258-19267
    • Albani, D.1    Mariconti, L.2    Ricagno, S.3    Pitto, L.4    Moroni, C.5    Helin, K.6    Cella, R.7
  • 3
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative. (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 0036007910 scopus 로고    scopus 로고
    • 'Cross-talk' between cell division cycle and development in plants
    • Boniotti, M.B. and Griffith, M.E. (2002) 'Cross-talk' between cell division cycle and development in plants. Plant Cell, 14, 11-16.
    • (2002) Plant Cell , vol.14 , pp. 11-16
    • Boniotti, M.B.1    Griffith, M.E.2
  • 5
    • 0035650799 scopus 로고    scopus 로고
    • Expression and stability of Arabidopsis CDC6 is associated with endoreplication
    • Castellano, M.M., del Pozo, J.C., Ramirez-Parra, E., Brown, S. and Gutierrez, C. (2001) Expression and stability of Arabidopsis CDC6 is associated with endoreplication. Plant Cell, 13, 2671-2686.
    • (2001) Plant Cell , vol.13 , pp. 2671-2686
    • Castellano, M.M.1    Del Pozo, J.C.2    Ramirez-Parra, E.3    Brown, S.4    Gutierrez, C.5
  • 6
    • 0037124026 scopus 로고    scopus 로고
    • S phase and meristem-specific expression of the tobacco RNR1b gene is mediated by an E2F element located in the 5′ leader sequence
    • Chabouté, M.-E., Clément, B. and Philipps, G. (2002) S phase and meristem-specific expression of the tobacco RNR1b gene is mediated by an E2F element located in the 5′ leader sequence. J. Biol. Chem. 277, 17845-17851.
    • (2002) J. Biol. Chem. , vol.277 , pp. 17845-17851
    • Chabouté, M.-E.1    Clément, B.2    Philipps, G.3
  • 7
    • 0033764384 scopus 로고    scopus 로고
    • Cell cycle regulation of the tobacco ribonucleotide reductase small subunit gene is mediated by E2F-like elements
    • Chabouté, M.-E., Clement, B., Sekine, M., Philipps, G. and Chaubet-Gigot, N. (2000) Cell cycle regulation of the tobacco ribonucleotide reductase small subunit gene is mediated by E2F-like elements. Plant Cell, 12, 1987-2000.
    • (2000) Plant Cell , vol.12 , pp. 1987-2000
    • Chabouté, M.-E.1    Clement, B.2    Sekine, M.3    Philipps, G.4    Chaubet-Gigot, N.5
  • 8
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium mediated transformation of Arabidopsis thaliana
    • Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
    • (1998) Plant J. , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 9
    • 18344370237 scopus 로고    scopus 로고
    • Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor
    • De Veylder, L., Beeckman, T., Beemster, G.T.S. et al. (2002) Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor. EMBO J. 21, 1360-1368.
    • (2002) EMBO J. , vol.21 , pp. 1360-1368
    • De Veylder, L.1    Beeckman, T.2    Beemster, G.T.S.3
  • 11
    • 0028054863 scopus 로고
    • G1/S-regulated E2F-containing protein complexes bind to the mouse thymidine kinase gene promoter
    • Dou, Q.P., Zhao, S., Levin, A.H., Wang, J., Helin, K. and Pardee, A.B. (1994) G1/S-regulated E2F-containing protein complexes bind to the mouse thymidine kinase gene promoter. J. Biol. Chem. 269, 1306-1313.
    • (1994) J. Biol. Chem. , vol.269 , pp. 1306-1313
    • Dou, Q.P.1    Zhao, S.2    Levin, A.H.3    Wang, J.4    Helin, K.5    Pardee, A.B.6
  • 12
    • 0034954651 scopus 로고    scopus 로고
    • Proliferating cell nuclear antigen transcription is repressed through an E2F consensus element and activated by geminivirus infection in mature leaves
    • Egelkrout, E.M., Robertson, D. and Hanley-Bowdoin, L. (2001) Proliferating cell nuclear antigen transcription is repressed through an E2F consensus element and activated by geminivirus infection in mature leaves. Plant Cell, 13, 1437-1452.
    • (2001) Plant Cell , vol.13 , pp. 1437-1452
    • Egelkrout, E.M.1    Robertson, D.2    Hanley-Bowdoin, L.3
  • 13
    • 0033920033 scopus 로고    scopus 로고
    • Intron-tagged epitope: A tool for facile detection and purification of proteins expressed in Agrobacterium transformed plant cells
    • Ferrando, A., Farras, R., Jasik, J., Schell, J. and Koncz, C. (2000) Intron-tagged epitope: a tool for facile detection and purification of proteins expressed in Agrobacterium transformed plant cells. Plant J, 22, 553-560.
    • (2000) Plant J. , vol.22 , pp. 553-560
    • Ferrando, A.1    Farras, R.2    Jasik, J.3    Schell, J.4    Koncz, C.5
  • 15
    • 0032233830 scopus 로고    scopus 로고
    • The retinoblastoma pathway in plant cell cycle and development
    • Gutierrez, C. (1998)The retinoblastoma pathway in plant cell cycle and development. Curr. Opin. Plant Biol. 1, 492-497.
    • (1998) Curr. Opin. Plant Biol. , vol.1 , pp. 492-497
    • Gutierrez, C.1
  • 17
    • 0034306996 scopus 로고    scopus 로고
    • The Rb/E2F pathway: Expanding roles and emerging paradigms
    • Harbour, J.W. and Dean, D.C. (2000) The Rb/E2F pathway: expanding roles and emerging paradigms. Genes Dev. 14, 2393-2409.
    • (2000) Genes Dev. , vol.14 , pp. 2393-2409
    • Harbour, J.W.1    Dean, D.C.2
  • 18
    • 0031886093 scopus 로고    scopus 로고
    • Regulation of cell proliferation by E2F transcription factors
    • Helin, K. (1998) Regulation of cell proliferation by E2F transcription factors. Curr. Opin. Genet. Dev. 8, 28-35.
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 28-35
    • Helin, K.1
  • 19
    • 0034949169 scopus 로고    scopus 로고
    • Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis
    • Ishida, S., Huang, E., Zuzan, H., Spang, R., Leone, G., West, M. and Nevins, J.R. (2001) Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis. Mol. Cell Biol. 21, 4684-4699.
    • (2001) Mol. Cell Biol. , vol.21 , pp. 4684-4699
    • Ishida, S.1    Huang, E.2    Zuzan, H.3    Spang, R.4    Leone, G.5    West, M.6    Nevins, J.R.7
  • 20
    • 0034796708 scopus 로고    scopus 로고
    • Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities
    • de Jager, S.M., Menges, M., Bauer, U.-M. and Murray, J.A.H. (2001) Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities. Plant Mol. Biol. 47, 555-568.
    • (2001) Plant Mol. Biol. , vol.47 , pp. 555-568
    • De Jager, S.M.1    Menges, M.2    Bauer, U.-M.3    Murray, J.A.H.4
  • 21
    • 0033213229 scopus 로고    scopus 로고
    • Retinoblastoma proteins in plants
    • de Jager, S.M. and Murray, J.A.H. (1999) Retinoblastoma proteins in plants. Plant Mol. Biol. 41, 295-299.
    • (1999) Plant Mol. Biol. , vol.41 , pp. 295-299
    • De Jager, S.M.1    Murray, J.A.H.2
  • 22
    • 0035868379 scopus 로고    scopus 로고
    • Expression analysis using DNA microarrays demonstrates that E2F-1 up- regulates expression of DNA replication genes including replication protein A2
    • Kalma, Y., Marash, L., Lamed, Y. and Ginsberg, D. (2001) Expression analysis using DNA microarrays demonstrates that E2F-1 up- regulates expression of DNA replication genes including replication protein A2. Oncogene, 20, 1379-1387.
    • (2001) Oncogene , vol.20 , pp. 1379-1387
    • Kalma, Y.1    Marash, L.2    Lamed, Y.3    Ginsberg, D.4
  • 23
    • 0035946917 scopus 로고    scopus 로고
    • Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors
    • Kel, A.E., Kel-Margoulis, O.V., Farnham, P.J., Bartley, S.M., Wingender, E. and Zhang, M.Q. (2001) Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors. J. Mol. Biol. 309, 99-120.
    • (2001) J. Mol. Biol. , vol.309 , pp. 99-120
    • Kel, A.E.1    Kel-Margoulis, O.V.2    Farnham, P.J.3    Bartley, S.M.4    Wingender, E.5    Zhang, M.Q.6
  • 24
    • 0036006034 scopus 로고    scopus 로고
    • Interaction of the Arabidopsis E2F and DP proteins confers their concomitant nuclear translocation and transactivation
    • Kosugi, S. and Ohashi, Y. (2002a) Interaction of the Arabidopsis E2F and DP proteins confers their concomitant nuclear translocation and transactivation. Plant Physiol. 128, 833-843.
    • (2002) Plant Physiol. , vol.128 , pp. 833-843
    • Kosugi, S.1    Ohashi, Y.2
  • 25
    • 0037053278 scopus 로고    scopus 로고
    • E2Ls, E2F-like repressors of Arabidopsis that bind to E2F sites in a monomeric form
    • Kosugi, S. and Ohashi, Y. (2002b) E2Ls, E2F-like repressors of Arabidopsis that bind to E2F sites in a monomeric form. J. Biol. Chem. 277, 16553-16558.
    • (2002) J. Biol. Chem. , vol.277 , pp. 16553-16558
    • Kosugi, S.1    Ohashi, Y.2
  • 26
    • 0036007583 scopus 로고    scopus 로고
    • E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters
    • Kosugi, S. and Ohashi, Y. (2002c) E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters. Plant J. 29, 45-59.
    • (2002) Plant J. , vol.29 , pp. 45-59
    • Kosugi, S.1    Ohashi, Y.2
  • 27
    • 0034548764 scopus 로고    scopus 로고
    • Characterization of two distinct DP-related genes from Arabidopsis thaliana
    • Magyar, Z., Atanassova, A., de Veylder, L., Rombauts, S. and Inzé, D. (2000) Characterization of two distinct DP-related genes from Arabidopsis thaliana. FEBS Lett. 486, 79-87.
    • (2000) FEBS Lett. , vol.486 , pp. 79-87
    • Magyar, Z.1    Atanassova, A.2    De Veylder, L.3    Rombauts, S.4    Inzé, D.5
  • 28
    • 0037155797 scopus 로고    scopus 로고
    • The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma pathway in plants
    • Mariconti, L., Pellegrini, B., Cantoni, R., Stevens, R., Bergonioux, C., Cella, R. and Albani, D. (2002) The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma pathway in plants. J. Biol. Chem. 277, 9911-9919.
    • (2002) J. Biol. Chem. , vol.277 , pp. 9911-9919
    • Mariconti, L.1    Pellegrini, B.2    Cantoni, R.3    Stevens, R.4    Bergonioux, C.5    Cella, R.6    Albani, D.7
  • 29
    • 0032697004 scopus 로고    scopus 로고
    • Cyclin-dependent kinases and cell division in higher plants - The nexus
    • Mironov, V., de Veylder, L., van Montagu, M. and Inzé, D. (1999) Cyclin-dependent kinases and cell division in higher plants - the nexus. Plant Cell, 11, 509-521.
    • (1999) Plant Cell , vol.11 , pp. 509-521
    • Mironov, V.1    De Veylder, L.2    Van Montagu, M.3    Inzé, D.4
  • 31
    • 0036007112 scopus 로고    scopus 로고
    • Plant development meets cell proliferation in Madrid
    • Murray, J.A.H. (2002) Plant development meets cell proliferation in Madrid. Dev. Cell, 2, 21-27.
    • (2002) Dev. Cell , vol.2 , pp. 21-27
    • Murray, J.A.H.1
  • 32
    • 0033136820 scopus 로고    scopus 로고
    • Tobacco retinoblastoma-related protein phosphorylated by a distinct cyclin-dependent kinase complex with Cdc2/cyclin D in vitro
    • Nakagami, H., Sekine, M., Murakami, H. and Shinmyo, A. (1999) Tobacco retinoblastoma-related protein phosphorylated by a distinct cyclin-dependent kinase complex with Cdc2/cyclin D in vitro. Plant J. 18, 243-252.
    • (1999) Plant J. , vol.18 , pp. 243-252
    • Nakagami, H.1    Sekine, M.2    Murakami, H.3    Shinmyo, A.4
  • 33
    • 0026520118 scopus 로고
    • Complexes containing the retinoblastoma gene product recognize different DNA motifs related to the E2F binding site
    • Ouellette, M.M., Chen, J., Wright, W.E. and Shay, J.W. (1992) Complexes containing the retinoblastoma gene product recognize different DNA motifs related to the E2F binding site. Oncogene, 7, 1075-1081.
    • (1992) Oncogene , vol.7 , pp. 1075-1081
    • Ouellette, M.M.1    Chen, J.2    Wright, W.E.3    Shay, J.W.4
  • 34
    • 0034551666 scopus 로고    scopus 로고
    • Characterization of wheat DP, a heterodimerization partner of the plant E2F transcription factor which stimulates E2F-DNA binding
    • Ramirez-Parra, E. and Gutierrez, C. (2000) Characterization of wheat DP, a heterodimerization partner of the plant E2F transcription factor which stimulates E2F-DNA binding. FEBS Lett. 486, 73-78.
    • (2000) FEBS Lett. , vol.486 , pp. 73-78
    • Ramirez-Parra, E.1    Gutierrez, C.2
  • 35
    • 0033199510 scopus 로고    scopus 로고
    • The cloning of plant E2F, a retinoblastoma-binding protein, reveals unique and conserved features with animal G(1)/S regulators
    • Ramirez-Parra, E., Xie, Q., Boniotti, M.B. and Gutierrez, C. (1999) The cloning of plant E2F, a retinoblastoma-binding protein, reveals unique and conserved features with animal G(1)/S regulators. Nucl. Acids Res. 27, 3527-3533.
    • (1999) Nucl. Acids Res. , vol.27 , pp. 3527-3533
    • Ramirez-Parra, E.1    Xie, Q.2    Boniotti, M.B.3    Gutierrez, C.4
  • 36
    • 0032127355 scopus 로고    scopus 로고
    • Multilevel regulation of histone gene expression during the cell cycle in tobacco
    • Reichheld, J.P., Gigot, C. and Chaubet-Gigot, N. (1998) Multilevel regulation of histone gene expression during the cell cycle in tobacco. Nucl. Acids Res. 26, 3255-3262.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 3255-3262
    • Reichheld, J.P.1    Gigot, C.2    Chaubet-Gigot, N.3
  • 37
    • 0037080483 scopus 로고    scopus 로고
    • E2F integrates cell cycle progression with DNA repair, replication, and G2/M checkpoints
    • Ren, B., Cam, H., Takahashi, Y., Volkert, T., Terragni, J., Young, R.A. and Dynlacht, B.D. (2002) E2F integrates cell cycle progression with DNA repair, replication, and G2/M checkpoints. Genes Dev. 16, 245-256.
    • (2002) Genes Dev. , vol.16 , pp. 245-256
    • Ren, B.1    Cam, H.2    Takahashi, Y.3    Volkert, T.4    Terragni, J.5    Young, R.A.6    Dynlacht, B.D.7
  • 38
    • 0035714918 scopus 로고    scopus 로고
    • AtE2F-a and AtDP-a, members of the E2F family of transcription factors, induce Arabidopsis leaf cells to re-enter S-phase
    • Rossignol, P., Stevens, R., Perennes, C., Jasinski, S., Cella, R., Tremosaygue, D. and Bergounioux, C. (2002) AtE2F-a and AtDP-a, members of the E2F family of transcription factors, induce Arabidopsis leaf cells to re-enter S-phase. Mol. General General, 266, 995-1003.
    • (2002) Mol. General General , vol.266 , pp. 995-1003
    • Rossignol, P.1    Stevens, R.2    Perennes, C.3    Jasinski, S.4    Cella, R.5    Tremosaygue, D.6    Bergounioux, C.7
  • 39
  • 40
    • 0033597769 scopus 로고    scopus 로고
    • Auxin induction of cell cycle regulated activity of tobacco telomerase
    • Tamura, K., Liu, H. and Takahashi, H. (1999) Auxin induction of cell cycle regulated activity of tobacco telomerase. J. Biol. Chem. 274, 20997-21002.
    • (1999) J. Biol. Chem. , vol.274 , pp. 20997-21002
    • Tamura, K.1    Liu, H.2    Takahashi, H.3
  • 41
    • 0030688065 scopus 로고    scopus 로고
    • Subunit composition determines E2F DNA-binding site specificity
    • Tao, Y., Kassatly, R.F., Cress, W.D. and Horowitz, J.M. (1997) Subunit composition determines E2F DNA-binding site specificity. Mol. Cell Biol. 17, 6994-7007.
    • (1997) Mol. Cell Biol. , vol.17 , pp. 6994-7007
    • Tao, Y.1    Kassatly, R.F.2    Cress, W.D.3    Horowitz, J.M.4
  • 43
    • 0035395939 scopus 로고    scopus 로고
    • Control of cell division by a retinoblastoma protein homolog in Chlamydomonas
    • Umen, J.G. and Goodenough, U.W. (2001) Control of cell division by a retinoblastoma protein homolog in Chlamydomonas. Genes Dev. 15, 1652-1661.
    • (2001) Genes Dev. , vol.15 , pp. 1652-1661
    • Umen, J.G.1    Goodenough, U.W.2
  • 45
    • 0037169354 scopus 로고    scopus 로고
    • Cancer susceptibility and the functions of BRCA1 and BRCA2
    • Venkitaraman, A.R. (2002) Cancer susceptibility and the functions of BRCA1 and BRCA2. Cell, 108, 171-182.
    • (2002) Cell , vol.108 , pp. 171-182
    • Venkitaraman, A.R.1
  • 48
    • 0037080674 scopus 로고    scopus 로고
    • Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis
    • Weinmann, A.S., Yan, P.S., Oberley, M.J., Huang, T.H. and Farnham, P.J. (2002) Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev. 16, 235-244.
    • (2002) Genes Dev. , vol.16 , pp. 235-244
    • Weinmann, A.S.1    Yan, P.S.2    Oberley, M.J.3    Huang, T.H.4    Farnham, P.J.5
  • 50
    • 0030008768 scopus 로고    scopus 로고
    • Expression of dominant negative mutant DP-1 blocks cell cycle progression in G1
    • Wu, C.-L., Classon, M., Dyson, N. and Harlow, E. (1996) Expression of dominant negative mutant DP-1 blocks cell cycle progression in G1. Mol. Cell Biol. 16, 3698-3706.
    • (1996) Mol. Cell Biol. , vol.16 , pp. 3698-3706
    • Wu, C.-L.1    Classon, M.2    Dyson, N.3    Harlow, E.4
  • 51
    • 0029842243 scopus 로고    scopus 로고
    • Plant cells contain a novel member of the retinoblastoma family of growth regulatory proteins
    • Xie, Q., Sanz-Burgos, A.P., Hannon, G.J. and Gutierrez, C. (1996) Plant cells contain a novel member of the retinoblastoma family of growth regulatory proteins. EMBO J. 15, 4900-4908.
    • (1996) EMBO J. , vol.15 , pp. 4900-4908
    • Xie, Q.1    Sanz-Burgos, A.P.2    Hannon, G.J.3    Gutierrez, C.4
  • 52
    • 0030987538 scopus 로고    scopus 로고
    • Distinct roles of E2F recognition sites as positive or negative elements in regulation of the DNA polymerase alpha 180 kDa catalytic subunit gene promoter during Drosophila development
    • Yamaguchi, M., Hayashi, Y., Hirose, F., Nishimoto, Y. and Matsukage, A. (1997) Distinct roles of E2F recognition sites as positive or negative elements in regulation of the DNA polymerase alpha 180 kDa catalytic subunit gene promoter during Drosophila development. Nucl. Acids Res. 25, 3847-3854.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 3847-3854
    • Yamaguchi, M.1    Hayashi, Y.2    Hirose, F.3    Nishimoto, Y.4    Matsukage, A.5
  • 53
    • 0033559030 scopus 로고    scopus 로고
    • Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP
    • Zheng, N., Fraenkel, E., Pabo, C.O. and Pavletich, N.P. (1999) Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP. Genes Dev. 13, 666-674.
    • (1999) Genes Dev. , vol.13 , pp. 666-674
    • Zheng, N.1    Fraenkel, E.2    Pabo, C.O.3    Pavletich, N.P.4


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