Application of high-resolution capillary array electrophoresis with automated fraction collection for GeneCalling™ analysis of the yeast genomic DNA

Electrophoresis

Volumn 24, Issue 4, 2003, Pages 639-647

  Berka, Jan ^a   Ruiz Martinez, Marie C ^b   Hammond, Richard ^b   Minarik, Marek ^c   Foret, Frantisek ^c,d   Sosic, Zoran ^c   Kleparnik, Karel ^d   Karger, Barry L ^c  

^a 454 Corporation   (United States)

^b CURAGEN CORPORATION   (United States)

^c NORTHEASTERN UNIVERSITY   (United States)

^d INSTITUTE OF ANALYTICAL CHEMISTRY   (Czech Republic)

Author keywords

Capillary array; Fraction collection; Gene expression profiling

Indexed keywords

CLONING; DNA SEQUENCES; GENE EXPRESSION; RECOVERY; YEAST;

CAPILLARY ARRAY; CAPILLARY ARRAY ELECTROPHORESIS; DNA FRAGMENT; DNA SEPARATION; FRACTION COLLECTION; GENE EXPRESSION PROFILING; GENOMIC DNA; HIGH RESOLUTION; TRANSCRIPT PROFILING; YEAST GENOMICS;

DNA;

AGAROSE; DNA FRAGMENT; FUNGAL DNA; GENOMIC DNA;

ANALYTICAL EQUIPMENT; ARTICLE; AUTOMATION; CAPILLARY ELECTROPHORESIS; CONTROLLED STUDY; CORRELATION ANALYSIS; DNA ISOLATION; DNA SEQUENCE; FLUORESCENCE ANALYSIS; FUNGAL GENE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENOME; MOLECULAR CLONING; NONHUMAN; PREDICTION; SEQUENCE ANALYSIS;

EID: 0037296978     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.200390075     Document Type: Article

References (27)

1. Liang, P., Zhu, W., Zhang, X., Guo, Z., O'Connell, R. P., Averboukh, L., Wang, F., Pardee, A. B., Nucleic Acids Res. 1994, 22, 5763-5764.
2. Liang, P., Pardee, A. B., Curr. Opin. Immunol. 1995, 7, 274-280.
3. Hughes, T. R., Shoemaker, D. D., Curr. Opin. Chem. Biol. 2001, 5, 21-25.
4. Lockhart, D. J., Winzeler, E. A., Nature 2000, 405, 827-836.
5. Shimkets, R. A, Lowe, D. G., Tai, J. T., Sehl, P., Jin, H., Yang, R., Predki, P. F., Rothberg, B. E., Murtha, M. T., Roth, M. E., Shenoy, S. G., Windemuth, A., Simpson, J. W., Simons, J. F., Daley, M. P., Gold, S. A., McKenna, M. P., Hillan, K., Went, G. T., Rothberg, J. M., Nature Biotechnol. 1999, 17, 798-803.
6. Ohneda, O., Ohneda, K., Nomiyama, H., Zheng, Z., Gold, S. A., Arai, F., Miyamoto, T., Taillon, B. E., McIndoe, R. A., Shimkets, R. A., Lewin, D. A., Suda, T., Lasky, L. A., Immunity 2000, 12, 141-150.
7. Renz, M., Tomlinson, E., Hultgren, B., Levin, N., Gu, Q., Shimkets, R. A., Lewin, D. A., Stewart, T. A., J. Biol. Chem. 2000, 7, 10429-10436.
8. Bruce, W., Folkerts, O., Garnaat, C., Crasta, O., Roth, B., Bowen, B., Plant Cell 2000, 12, 65-80.
9. Gould Rothberg, B. G., Ramesh, T. M., Burgess, C. E., Drug Dev. Res. 2000, 49, 54-64.
10. Frost, M. R., Guggenheim, J. A., Nucleic Acids Res. 1999, 27, e6.
11. Doris, P. A., Oefner, P. J., Chilton, B. S., Hayward-Lester, A., J. Chromatogr. A 1998, 806, 47-60.
12. Rose, D. J., Jorgenson, J. W., J. Chromatogr. 1988, 438, 23-34.
13. Schwer, C., Lottspeich, F., J. Chromatogr. 1992, 623, 345-355.
14. Müller, O., Foret, F., Karger, B. L., Anal. Chem. 1995, 67, 2974-2980.
15. Minarik, M., Foret, F., Karger, B. L., Electrophoresis 2000, 21, 247-254.
16. Irie, T., Oshida, T., Hasegawa, H., Matsuoka, Y., Li, T., Oya, Y., Tanaka, T., Tsujimoto, G., Kambara, H., Electrophoresis 2000, 21, 367-374.
17. Minarik, M., Gilar, M., Kleparnik, K., Foret, F., Miller, A. W., Sosic, Z., Karger, B. L., Electrophoresis 2002, 23, 35-42.
18. Karger, B. L., Goetzinger, W., US Patent #5840388, 1998.
19. Taylor, J. A., Yeung, E. S., Anal. Chem. 1993, 65, 956-960.
20. DeAngelis, M. M., Wang, D. G., Hawkins, T. L., Nucleic Acids Res. 1995, 23, 4742-4743.
21. Green, C. D., Simons, J. F., Taillon, B. E., Lewin, D. A., J. Immunol. Methods 2001, 250, 67-79.
22. Thompson, J. D., Higgins, D. G., Gibson, T. J., Clustal, W., Nucleic Acids Res. 1994, 22, 4673-4680.
23. Zhou, M. Y, Gomez-Sanchez, C. E., Curr. Issues Mol. Biol., 2000, 2, 1-7.
24. Khrapko, K., Coller, H., Andre, P., Li, X., Foret, F., Belenky, A., Karger, B. L., Thilly, W. G., Nucleic Acids Res. 1997, 25, 685-693.
25. Premstaller, A., Xiao, W., Oberacher, H., O'Keefe, M., Stern, D., Willis, T., Huber, C. G., Oefner, P., J. Genome Res. 2001, 11, 1944-51.
26. Premstaller, A., Oberacher, H., Rickert, A., Huber, C. G., Oefner, P. J., Genomics 2002, 79, 793-798.
27. Premstaller, A., Oefner, P. J., Oberacher H., Huber, C. G., Anal. Chem. 2002, 74, 4688-4693.