The Gene Ontology Annotation (GOA) project - Application of GO in SWISS-PROT, TrEMBL and InterPro

Comparative and Functional Genomics

Volumn 4, Issue 1, 2003, Pages 71-74

  Camon, Evelyn ^a   Barrell, Daniel ^a   Brooksbank, Catherine ^a   Magrane, Michele ^a   Apweiler, Rolf ^a  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

Author keywords

Annotation; Controlled vocabulary; Ontology; Proteomics

Indexed keywords

GENE PRODUCT;

BIOINFORMATICS; CLINICAL RESEARCH; DNA DATA BANK OF JAPAN; EMBL NUCLEOTIDE SEQUENCE DATABASE; GENBANK; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DATABASE; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; MEDICAL INFORMATICS; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REVIEW; SWISS-PROT;

EID: 0037294313     PISSN: 15316912     EISSN: None     Source Type: Journal    
DOI: 10.1002/cfg.235     Document Type: Review

References (18)

1. AmiGO Browser: http://www.godatabase.org/cgi-bin/go.cgi
2. Apweiler R, Biswas M, Fleischmann W, et al, 2001. Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. Nucleic Acids Res 29(1): 44-48.
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4. Biswas M, O'Rourke JF, Camon E, et al. 2002. Applications of InterPro in protein annotation and genome analysis. Brief Bioinform 3(3): 285-295.
5. Butler D. 2002. NIH pledges cash for global protein database. Nature 419: 101.
6. EBI FTP Server: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa
7. EC2GO Mapping: http://www.geneontology.org/external2go/ec2go
8. Ensembl: http://www.ensembl.org/Homo_sapiens/
9. Gene Ontology Home Page: http://www.geneontology.org/
10. Gene Ontology Annotation Home Page: http://www.ebi.ac.uk/GOA
11. Hubbard T, Barker D, Birney E, et al, 2002. The Ensembl genome database project. Nucleic Acids Res 30(1): 38-41.
12. International Protein Index: http://www.ebi.ac.uk/IPI/IPIhelp.html
13. InterPro2GO Mapping: http://www.geneontology.org/external2go/interpro2go
14. Proteome Analysis Pages: http://www.ebi.ac.uk/proteome
15. QuickGO Browser: http://www.ebi.ac.uk/ego/QuickGO
16. Sequence Retrieval System (SRS): http://srs.ebi.ac.uk/
17. SWKW2GO Mapping: http://www.geneontology.org/external2go/spkw2go
18. The Gene Ontology Consortium. 2001. Creating the gene ontology resource: design and implementation. Genome Res 11: 1425-1433.