Molecular evolution and phylogeny of dengue type 4 virus in the Caribbean

Virology

Volumn 306, Issue 1, 2003, Pages 126-134

  Foster, Jerome E ^a   Bennett, Shannon N ^b   Vaughan, Helen ^c   Vorndam, Vance ^d   McMillan, W Owen ^b   Carrington, Christine V F ^a  

^a UNIVERSITY OF THE WEST INDIES   (Trinidad and Tobago)

^b UNIVERSITY OF PUERTO RICO   (Puerto Rico)

^c Caribbean Epidemiology Centre   (Trinidad and Tobago)

^d CENTERS FOR DISEASE CONTROL AND PREVENTION   (Puerto Rico)

Author keywords

Caribbean; DEN 4; Dengue; Envelope; Evolution; NS1; Phylogeny

Indexed keywords

ENVELOPE PROTEIN; VIRUS PROTEIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CARIBBEAN ISLANDS; CENTRAL AMERICA; CLADISTICS; DENGUE VIRUS; ENVELOPE GENE; EVOLUTIONARY ADAPTATION; GENE FLOW; GENE ISOLATION; GENE SEQUENCE; GENETIC LINE; GEOGRAPHIC DISTRIBUTION; MIGRATION; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SOUTH AMERICA; SPECIES IDENTIFICATION; TIME; VIRAL GENETICS; VIRUS GENE; VIRUS ISOLATION; VIRUS TYPING;

CARIBBEAN REGION; DENGUE; DENGUE VIRUS; DNA, VIRAL; EVOLUTION, MOLECULAR; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; VIRAL ENVELOPE PROTEINS; VIRAL NONSTRUCTURAL PROTEINS;

EID: 0037294052     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0042-6822(02)00033-8     Document Type: Article

References (34)

1. Anderson R.M., May R.M. Population biology of infectious diseases Part I. Nature. 280:1979;361-367.
2. Brault A.C., Powers A.M., Holmes E.C., Woelk C.H., Weaver S.C. Positively charged amino acid substitutions in the e2 envelope glycoprotein are associated with the emergence of Venezuelan equine encephalitis virus. J. Virol. 76:2002;1718-1730.
3. Caribbean Epidemiology Centre (1999a). Communicable Diseases Feedback Report - Reporting Period: Epidemiologic Weeks 13-34, 1998. October 13, 1998. Available at: http://www.carec.paho.org/data/comm-dis/98wks13-34/index.html.
4. Caribbean Epidemiology Centre (1999b). Communicable Diseases Feedback Report - Reporting Period: Epidemiologic Weeks 35-43, 1998. December 8, 1998. Available at: http://www.carec.paho.org/data/comm-dis/98wks35-43/index.html.
5. Caribbean Epidemiology Centre (1999c). CAREC Epinote: An Update of Dengue Fever in the Caribbean-1998. 19 April, 1999. Available at: http://www.carec.org/data/dengue/1998update.html.
6. Caribbean Epidemiology Centre (2000). Dengue Virus Types Identified 1997-2000. 23 November, 2000. Available at: http://www.carec.org/data/dengue/dengue-virus-types-1997-2000.htm.
7. Dengue Type 3 infection-Nicaragua and Panama, October-November, 1994. Morbid Mortal Weekly Rep. 44:1995;21-24.
8. Chen Y., Maguire T., Marks R.M. Demonstration of binding of dengue virus envelope protein to target cells. J. Virol. 70:1996;8765-8772.
9. Dietz V., Gubler D.J., Ortiz S., Kuno G., Casta-Velez A., Sather G.E., Gomez I., Vergne E. The 1986 dengue and dengue hemorrhagic fever epidemic in Puerto Rico epidemiologic and clinical observations. PR Health Sci. J. 15:1996;201-210.
10. Gubler D.G., Suharyono W., Lubis I., Eram S., Gunarso S. Epidemic dengue 3 in Central Java, associated with low viremia in man. Am. J. Trop. Med. Hyg. 30:1981;1094-1099.
11. Gubler D.J. Dengue and dengue hemorrhagic fever. Clin. Microbiol. Rev. 11:1998;480-496.
12. Gubler, D.J. (1997). Dengue and dengue hemorrhagic fever: its history and resurgence as a global public health problem, in: Gubler, D.J., Kuno, G. (Eds.), Dengue and Dengue Hemorrhagic Fever, CAB International. pp. 1-22.
13. Halstead S.B. Pathogenesis of dengue challenges to molecular biology. Science. 239:1988;476-481.
14. Higgins D.G., Sharp P.M. CLUSTAL a package for performing multiple sequence alignment on a microcomputer. Gene. 73:1988;237-244.
15. Higgins D.G., Thompson J.D., Gibson T.J. Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266:1996;383-402.
16. Holmes E.C., Worobey M., Rambaut A. Phylogenetic evidence for recombination in dengue virus. Mol. Biol. Evol. 16:1999;405-409.
17. Jenkins G.M., Rambaut A., Pybus O.G., Holmes E.C. Rates of molecular evolution in RNA viruses a quantitative phylogenetic analysis. J. Mol. Evol. 54:2002;156-165.
18. Kliks S.C., Nisalak A., Brandt W.E., Wahl L., Burke D.S. Antibody-dependent enhancement of dengue virus growth in human monocytes as a risk factor for dengue hemorrhagic fever. Am. J. Trop. Med. Hyg. 40:1989;444-451.
19. Kliks S. Antibody-enhanced infection of monocytes as the pathogenetic mechanism for severe dengue illness. AIDS Res. Hum. Retroviruses. 6:1990;993-998.
20. Knudsen A.B. Aedes aegypti and Dengue in the Caribbean. Mosquito News. 43:1983;269-275.
21. Lanciotti R.S., Gubler D.J., Trent D.W. Molecular evolution and phylogeny of dengue-4 viruses. J. Gen. Virol. 78:(7):1997;2279-2284.
22. Leitmeyer K.C., Vaughn D.W., Watts D.M., Salas R., Villalobos de Chacon I., Ramos C., Rico-Hesse R. Dengue virus structural differences that correlate with pathogenesis. J. Virol. 73:1999;4738-4747.
23. Morens D.M., Marchette N.J., Chu M.C., Halstead S.B. Growth of dengue type 2 virus isolates in human peripheral blood leukocytes correlates with severe and mild dengue disease. Am. J. Trop. Med. Hyg. 45:1991;644-651.
24. Posada D., Crandall K.A. MODELTEST testing the model of DNA substitution. Bioinformatics. 14:1998;817-818.
25. Rico-Hesse R., Harrison L.M., Salas R.A., Tovar D., Nisalak A., Ramos C., Boshell J., de Mesa M.T., Nogueira R.M., da Rosa A.T. Origins of dengue type 2 viruses associated with increased pathogenicity in the Americas. Virology. 230:1997;244-251 doi: 10.1006/viro.1997.8504.
26. Roehrig J.T., Bolin R.A., Kelly R.G. Monoclonal antibody mapping of the envelope glycoprotein of the dengue 2 virus, Jamaica. Virology. 5:1998;246 (2), 317-28, doi: 10.1006/viro.1998.9200.
27. Swofford, D.L. (1998). PAUP* 4.0-Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, MA: Sinauer.
28. Thein S., Aung M.M., Shwe T.N., Aye M., Zaw A., Aye K., Aye K.M., Aaskov J. Risk factors in dengue shock syndrome. Am. J. Trop. Med. Hyg. 56:1997;566-572.
29. Vaughn D.W., Green S., Kalayanarooj S., Innis B.L., Nimmannitya S., Suntayakorn S., Endy T.P., Raengsakulrach B., Rothman A.L., Ennis F.A., Nisalak A. Dengue viremia titer, antibody response pattern, and virus serotype correlate with disease severity. J. Infect. Dis. 181:2000;2-9.
30. Wang E., Ni H., Xu R., Barrett A.D., Watowich S.J., Gubler D.J., Weaver S.C. Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses. J. Virol. 74:2000;3227-3234.
31. Wang W.K., Lin S.R., Lee C.M., King C.C., Chang S.C. Dengue type 3 virus in plasma is a population of closely related genomes quasispecies. J. Virol. 76:(9):2002;4662-4665.
32. World Health Organisation. (1996). Dengue and Dengue Haemorrhagic Fever. Fact Sheet, 117, May 1996.
33. Worobey M., Rambaut A., Holmes E.C. Widespread intra-serotype recombination in natural populations of dengue virus. Proc. Natl. Acad. Sci. USA. 96:1999;7352-7357.
34. Zhao B., Mackow E., Buckler-White A., Markoff L., Chanock R.M., Lai C.J., Makino Y. Cloning full-length dengue type 4 viral DNA sequences analysis of genes coding for structural proteins. Virology. 155:1986;77-88.