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Volumn 43, Issue 1, 2003, Pages 68-74

Many-body optimization using an ab initio Monte Carlo method

Author keywords

[No Author keywords available]

Indexed keywords

BORON TRIFLUORIDE; MANY BODY OPTIMIZATION; MANY BODY SYSTEMS; METHYL CARBENIUM ION; MINIMUM ENERGY STRUCTURES; SOLVATED MOLECULES; SOLVATION;

EID: 0037270099     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci0202887     Document Type: Article
Times cited : (9)

References (29)
  • 1
    • 0001010341 scopus 로고
    • A group equivalents scheme for free energies of formation of organic compounds in aqueous solution
    • Guthrie, J. P. A Group Equivalents Scheme for Free Energies of Formation of Organic Compounds in Aqueous Solution. Can. J. Chem. 1992, 70, 1042-1054.
    • (1992) Can. J. Chem. , vol.70 , pp. 1042-1054
    • Guthrie, J.P.1
  • 2
    • 9944232242 scopus 로고
    • Group contributions to the thermodynamic properties of non-ionic organic solutes in dilute aqueous solution
    • Cabani, S.; Gianni, P.; Mollica, V.; Lepori, L. Group Contributions to the Thermodynamic Properties of Non-Ionic Organic Solutes in Dilute Aqueous Solution. J. Solution Chem. 1981, 10(8), 563-595.
    • (1981) J. Solution Chem. , vol.10 , Issue.8 , pp. 563-595
    • Cabani, S.1    Gianni, P.2    Mollica, V.3    Lepori, L.4
  • 3
    • 11744256643 scopus 로고
    • Molecular interactions in solution: An overview of methods based on continuous distributions of the solvent
    • Tomasi, J.; Persico, M. Molecular Interactions in Solution: An Overview of Methods Based on Continuous Distributions of the Solvent. Chem. Rev. 1994, 94(7), 2027-2094.
    • (1994) Chem. Rev. , vol.94 , Issue.7 , pp. 2027-2094
    • Tomasi, J.1    Persico, M.2
  • 4
    • 84961982801 scopus 로고    scopus 로고
    • The cluster-continuum model for the calculation of the solvation free energy of ionic species
    • Pliego, J. R.; Riveros, J. M. The Cluster-Continuum Model for the Calculation of the Solvation Free Energy of Ionic Species. J. Phys. Chem. A 2001, 105(30), 7241-7247.
    • (2001) J. Phys. Chem. A , vol.105 , Issue.30 , pp. 7241-7247
    • Pliego, J.R.1    Riveros, J.M.2
  • 5
    • 11744387198 scopus 로고
    • Stochastic exploration of molecular mechanics energy surfaces, hunting for the global minimum
    • Saunders, M. Stochastic Exploration of Molecular Mechanics Energy Surfaces, Hunting for the Global Minimum. J. Am. Chem. Soc. 1987, 109(10), 3150-3152.
    • (1987) J. Am. Chem. Soc. , vol.109 , Issue.10 , pp. 3150-3152
    • Saunders, M.1
  • 6
    • 0023430366 scopus 로고
    • Monte Carlo-minimization approach to the multiple-minima problem in protein folding
    • Li, Z.; Scheraga, H. A. Monte Carlo-Minimization Approach to the Multiple-Minima Problem in Protein Folding. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 6611-6615.
    • (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 6611-6615
    • Li, Z.1    Scheraga, H.A.2
  • 7
    • 0000782536 scopus 로고
    • A new approach to probing conformational space with molecular mechanics: Random incremental pulse search
    • Ferguson, D. M.; Raber, D. J. A New Approach to Probing Conformational Space with Molecular Mechanics: Random Incremental Pulse Search. J. Am. Chem. Soc. 1989, 111(12), 4371-4378.
    • (1989) J. Am. Chem. Soc. , vol.111 , Issue.12 , pp. 4371-4378
    • Ferguson, D.M.1    Raber, D.J.2
  • 8
    • 0001369356 scopus 로고
    • Determination of the structure of mixed argon-xenon clusters using a finite-temperature, lattice-based Monte Carlo method
    • Robertson, D. H.; Brown, F. B. Determination of the Structure of Mixed Argon-Xenon Clusters Using a Finite-Temperature, Lattice-Based Monte Carlo Method. J. Chem. Phys. 1989, 90(6), 3221-3229.
    • (1989) J. Chem. Phys. , vol.90 , Issue.6 , pp. 3221-3229
    • Robertson, D.H.1    Brown, F.B.2
  • 9
    • 0032233055 scopus 로고    scopus 로고
    • Computer simulations with explicit solvent: Recent progress in the thermodynamic decomposition of free energies and in modeling electrostatic effects
    • Levy, R. M.; Gallicchio, E. Computer Simulations with Explicit Solvent: Recent Progress in the Thermodynamic Decomposition of Free Energies and in Modeling Electrostatic Effects. Annu. Rev. Phys. Chem. 1998, 49, 531-567.
    • (1998) Annu. Rev. Phys. Chem. , vol.49 , pp. 531-567
    • Levy, R.M.1    Gallicchio, E.2
  • 10
    • 0035827113 scopus 로고    scopus 로고
    • Explicit-solvent molecular dynamics simulation at constant pH: Methodology and application to small amines
    • Börjesson, U.; Hünenberger, P. H. Explicit-Solvent Molecular Dynamics Simulation at Constant pH: Methodology and Application to Small Amines. J. Chem. Phys. 2001, 114(22), 9706-9719.
    • (2001) J. Chem. Phys. , vol.114 , Issue.22 , pp. 9706-9719
    • Börjesson, U.1    Hünenberger, P.H.2
  • 11
    • 84986527758 scopus 로고
    • IMOMM: A new integrated ab initio + molecular mechanics geometry optimization scheme of equilibrium structures and transition states
    • Maseras, F.; Morokuma, K. IMOMM: A New Integrated Ab Initio + Molecular Mechanics Geometry Optimization Scheme of Equilibrium Structures and Transition States. J. Comput. Chem. 1995, 16, 1170-1179.
    • (1995) J. Comput. Chem. , vol.16 , pp. 1170-1179
    • Maseras, F.1    Morokuma, K.2
  • 12
    • 0001557514 scopus 로고
    • Ab initio Monte Carlo simulated annealing method
    • Keshari, V.; Ishikawa, Y. Ab Initio Monte Carlo Simulated Annealing Method. Chem. Phys. Lett. 1994a, 218, 406-412.
    • (1994) Chem. Phys. Lett. , vol.218 , pp. 406-412
    • Keshari, V.1    Ishikawa, Y.2
  • 13
    • 84987133931 scopus 로고
    • First-principles Monte Carlo simulated annealing study of the structures and properties of hydrogenated lithium clusters
    • Keshari, V.; Ishikawa, Y. First-Principles Monte Carlo Simulated Annealing Study of the Structures and Properties of Hydrogenated Lithium Clusters. Int. J. Quantum Chem. 1994b, Suppl. 28, 541-551.
    • (1994) Int. J. Quantum Chem. , Issue.SUPPL. 28 , pp. 541-551
    • Keshari, V.1    Ishikawa, Y.2
  • 15
    • 85034513467 scopus 로고    scopus 로고
    • Ab initio Monte Carlo simulation using multicanonical algorithm: Temperature dependence of the average structure of water dimer
    • Bandyopadhyay, P.; Ten-No, S.; Iwata, S. Ab Initio Monte Carlo Simulation Using Multicanonical Algorithm: Temperature Dependence of the Average Structure of Water Dimer. Mol. Phys. 1999, 96(3), 349-358.
    • (1999) Mol. Phys. , vol.96 , Issue.3 , pp. 349-358
    • Bandyopadhyay, P.1    Ten-No, S.2    Iwata, S.3
  • 18
    • 78650612270 scopus 로고
    • Configurational bias Monte Carlo-A new sampling scheme for flexible chains
    • Siepmann, J. I.; Frenkel, D. Configurational Bias Monte Carlo-A New Sampling Scheme for Flexible Chains. Mol. Phys. 1992, 75, 59-70.
    • (1992) Mol. Phys. , vol.75 , pp. 59-70
    • Siepmann, J.I.1    Frenkel, D.2
  • 19
    • 78751661892 scopus 로고
    • A concerted rotation algorithm for atomistic Monte Carlo simulation of polymer melts
    • Dodd, L. R.; Boone, T. D.; Theodorou, D. N. A Concerted Rotation Algorithm for Atomistic Monte Carlo Simulation of Polymer Melts. Mol. Phys. 1993, 78, 961-996.
    • (1993) Mol. Phys. , vol.78 , pp. 961-996
    • Dodd, L.R.1    Boone, T.D.2    Theodorou, D.N.3
  • 20
    • 0030813476 scopus 로고    scopus 로고
    • Predicting multicomponent phase equilibria and free energies of transfer for alkanes by molecular simulation
    • Martin, M. G.; Siepmann, J. I. Predicting Multicomponent Phase Equilibria and Free Energies of Transfer for Alkanes by Molecular Simulation. J. Am. Chem. Soc. 1997, 119, 8921-8924.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 8921-8924
    • Martin, M.G.1    Siepmann, J.I.2
  • 22
    • 4243553426 scopus 로고
    • Density-functional exchange-energy approximation with correct asymptotic behavior
    • Becke, A. D. Density-Functional Exchange-Energy Approximation with Correct Asymptotic Behavior. Phys. Rev. A 1988, 38(6), 3098-3100.
    • (1988) Phys. Rev. A , vol.38 , Issue.6 , pp. 3098-3100
    • Becke, A.D.1
  • 23
    • 0345491105 scopus 로고
    • Development of the colle-salvetti correlation-energy formula into a functional of the electron density
    • Lee, C.; Yang, W.; Parr, R. G. Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron Density. Phys. Rev. B 1988, 37(2), 785-789.
    • (1988) Phys. Rev. B , vol.37 , Issue.2 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 24
    • 0002077637 scopus 로고
    • Geometry optimization by direct inversion in the iterative subspace
    • Csaszar, P.; Pulay, P. Geometry Optimization by Direct Inversion in the Iterative Subspace. J. Mol. Struct. (THEOCHEM) 1984, 114, 31-34.
    • (1984) J. Mol. Struct. (THEOCHEM) , vol.114 , pp. 31-34
    • Csaszar, P.1    Pulay, P.2
  • 25
    • 0013059057 scopus 로고    scopus 로고
    • 2) algorithm for solving systems of linear equations for coordinate transformations in quantum chemical geometry optimization
    • 2) Algorithm for Solving Systems of Linear Equations for Coordinate Transformations in Quantum Chemical Geometry Optimization. J. Chem. Phys. 1998, 109, 1700-1704.
    • (1998) J. Chem. Phys. , vol.109 , pp. 1700-1704
    • Farkas, O.1    Schlegel, H.B.2
  • 26
    • 26444479778 scopus 로고
    • Optimization by simulated annealing
    • Kirkpatrick, S.; Gelatt, C. D., Jr.; Vecchi, M. P. Optimization by Simulated Annealing. Science 1983, 220(4598), 671-680.
    • (1983) Science , vol.220 , Issue.4598 , pp. 671-680
    • Kirkpatrick, S.1    Gelatt C.D., Jr.2    Vecchi, M.P.3
  • 29
    • 0026388340 scopus 로고
    • On the nature of hydrated aliphatic carbenium ions and on their role in homogeneous acid catalysis
    • Kazansky, V. B.; Senchenya, I. N.; Pankov, A. A. On the Nature of Hydrated Aliphatic Carbenium Ions and on Their Role in Homogeneous Acid Catalysis. J. Mol. Catal. 1991, 70(2), 189-195.
    • (1991) J. Mol. Catal. , vol.70 , Issue.2 , pp. 189-195
    • Kazansky, V.B.1    Senchenya, I.N.2    Pankov, A.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.