The GENETPIG database: A tool for comparative mapping in pig (Sus scrofa)

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 138-141

  Karsenty, Emmanuelle ^a,b   Barillot, Emmanuele ^a,b,c   Tosser Klopp, Gwenola ^d   Lahbib Mansais, Yvette ^d   Milan, Denis ^d   Hatey, François ^d   Cirera, Susanna ^e   Sawera, Milena ^e   Jørgensen, Claus B ^e   Chowdhary, Bhanu ^e,f   Fredholm, Merete ^e   Wimmers, Klaus ^g   Ponsuksili, Siriluck ^g   Davoli, Roberta ^h   Fontanesi, Luca ^h   Braglia, Silvia ^h   Zambonelli, Paolo ^h   Bigi, Daniele ^h   Neuenschwander, Stefan ⁱ   Gellin, Joël ^d  

^a Infobiogen   (France)

^b Centre de recherche de Versailles   (France)

^c GÉNÉTHON   (France)

^d CEMAGREF   (France)

^e UNIVERSITY OF COPENHAGEN   (Denmark)

^f TEXAS A AND M UNIVERSITY   (United States)

^g UNIVERSITY OF BONN   (Germany)

^h UNIVERSITY OF BOLOGNA   (Italy)

ⁱ ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DATA ANALYSIS; EUROPE; EXPRESSED SEQUENCE TAG; GENE FUNCTION; GENE IDENTIFICATION; GENES CONTROLLING ECONOMIC TRAITS IN PIG DATABASE; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC TRAIT; GENOME ANALYSIS; INFORMATION PROCESSING; INTERNET; NONHUMAN; PRIORITY JOURNAL; REVIEW; SEQUENCE HOMOLOGY; SWINE;

MAMMALIA; SUIDAE; SUS; SUS SCROFA;

EID: 0037255083     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg061     Document Type: Review

References (22)

1. Blake,J.A., Richardson,J.E., Bult,C.J., Kadin,J.A., Eppig,J.T. and the Mouse Genome Database Group (2002) The Mouse Genome Database (MGD): The model organism database for the laboratory mouse. Nucleic Acids Res., 30, 113-115.
2. Goureau,A., Yerle,M., Schmitz,A., Riquet,J., Milan,D., Pinton,P., Frelat,G. and Gellin,J. (1996) Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics, 36, 252-262.
3. Robic,A., Riquet,J., Yerle,M., Milan,D., Lahbib-Mansais,Y., Dubut-Fontana,C. and Gellin,J. (1996) Porcine linkage and cytogenetic maps integrated by regional mapping of 100 microsatellites on somatic cell hybrid panel. Mamm. Genome, 7, 438-445.
4. Yerle,M., Echard,G., Robic,A., Mairal,A., Dubut-Fontana,C., Riquet,J., Pinton,P., Milan,D., Lahbib-Mansais,Y. and Gellin,J. (1996) A somatic cell hybrid panel for pig regional gene mapping characterized by molecular cytogenetics. Cytogenet. Cell Genet., 73, 194-202.
5. Yerle,M., Pinton,P., Robic,A., Alfonso,A., Palvadeau,Y., Delcros,C., Hawken,R., Alexander,L., Beattie,L.B., Milan,D. and Gellin,J. (1998) Construction of a whole genome radiation hybrid panel for high-resolution gene mapping in pigs. Cytogenet. Cell Genet., 82, 182-188.
6. Hawken,R.J., Murtaugh,J., Flickinger,G.H., Yerle,M., Robic,A., Milan,D., Gellin,J., Beattie,C.W., Schook,L.B., and Alexander,L.J. (1999) A first generation porcine whole genome radiation hybrid map. Mamm. Genome, 10, 824-830.
7. Milan,D., Hawken,R., Cabau,C., Leroux,S., Genet,C., Lahbib,Y., Tosser,G., Robic,A., Hatey,F., Alexander,L., Beattie,C., Schook,L., Yerle,M. and Gellin,J. (2000) IMpRH server: an RH mapping server available on the Web. Bioinformatics, 6, 558-559.
8. Lahbib-Mansais,Y., Dalias,G., Milan,D., Yerle,M., Robic,A., Gyapay,G. and Gellin,J. (1999) A successful strategy for comparative mapping with human ESTs: 65 new regional assignments in the pig. Mamm. Genome, 10, 145-153.
9. Jiang,Z., Priat,C. and Galibert,F. (1998) Traced orthologous amplified sequence tags (TOASTs) and mammalian comparative maps. Mamm. Genome, 9, 577-587.
10. Lahbib-Mansais,Y., Leroux,S., Milan,D., Yerle,M., Robic,A., Jiang,Z., Andre,C. and Gellin,J. (2000) Comparative mapping between humans and pigs: localization of 58 anchorage markers (TOASTs) by use of porcine somatic cell and radiation hybrid panels. Mamm. Genome, 11, 1098-1106.
11. Clouscard-Martinato,C., Mulsant,P., Robic,A., Bonnet,A., Gasser,F. and Hatey,F. (1998) Characterization of FSH-regulated genes isolated by mRNA differential display from pig ovarian granulosa cells. Anim. Genet., 29, 98-106.
12. Lahbib-Mansais,Y., Tosser-Klopp,G., Leroux,S., Cabau,C., Karsenty,E., Milan,D., Barillot, E., Yerle,M., Hatey,F. and Gellin,J. (2003) Contribution to High-resolution mapping in pigs with 101 Type I markers and Progress in comparative map between Humans and Pigs. Mamm. Genome.
13. Cirera,S., Jørgensen,C.B., Sawera,M., Raudsep,T., Chowdhary,B. and Fredholm,M. (in preparation). Comparative mapping in the pig: localization of 214 expressed sequence tagged sites.
14. Ponsuksili,S., Wimmers,K., Yerle,M. and Schellander,K. (2001) Mapping of 93 porcine ESTs preferentially expressed in liver. Mamm. Genome, 12, 869-872.
15. Davoli,R., Bigi,D., Fontanesi,L., Zambonelli,P., Yerle,M., Zijlstra,C., Bosma,A.A., Robic,A. and Russo,V. (2000) Mapping of 14 expressed sequence tags (ESTs) from porcine skeletal muscle by somatic cell hybrid analysis. Anim Genet., 31, 400-403.
16. Davoli,R., Fontanesi,L., Zambonelli,P., Bigi,D., Gellin,J., Yerle,M., Milc,J., Braglia,S., Cenci,V., Cagnazzo,M. and Russo,V. (2002) Isolation of porcine expressed sequence tags for the construction of a first genomic transcript map of the skeletal muscle in pig. Anim Genet., 33, 3-18.
17. Yerle,M., Lahbib-Mansais,Y., Robic,A., Pinton,P., Goureau,A., Milan,D. and Gellin,J. (1997) The cytogenetic map of the Pig (Sus scrofa Domestica). Mamm. Genome, 8, 592-607.
18. Guyon,F., Vaysseix,G. and Barillot,E. (2000) MappetShow: Non-Linear Visualization for genome data. Pacific Symposium on Biocomputing, Hawaii, pp. 215-226.
19. Wain,H.M., Lush,M., Ducluzeau,F. and Povey,S. (2002) Genew: The Human Gene Nomenclature Database. Nucleic Acids Res., 30, 169-171.
20. Wheeler,D.L., Church,D.M., Lash,A.E., Leipe,D.D., Madden,T.L., Pontius,J.U., Schuler,G.D., Schriml,L.M., Tatusova,T.A., Wagner,L. and Rapp,B.A. (2002) Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res., 30, 13-16.
21. Stoesser,G., Baker,W., van den Broek,A., Camon,E., Garcia-Pastor,M., Kanz,C., Kulikova,T., Leinonen,R., Lin,Q., Lombard,V. Lopez,R., Redaschi,N., Stoehr,P., Tuli,M.A., Tzouvara,K. and Vaughan,R. (2002) The EMBL Nucleotide Sequence Database. Nucleic Acids Res., 30, 21-26.
22. Viara,E., Barillot,E. and Vaysseix,G. (1999) The EyeDB OODBMS. International Database Engineering and Applications Symposium, Montreal. IEEE Publications, pp. 390-402.