NESbase version 1.0: A database of nuclear export signals

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 393-396

  la Cour, Tanja ^a,b   Gupta, Ramneek ^a   Rapacki, Kristoffer ^a   Skriver, Karen ^b   Poulsen, Flemming M ^b   Brunak, Søren ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; LEUCINE; NUCLEAR FACTOR; PROTEIN DERIVATIVE;

AMINO ACID SEQUENCE; CELL NUCLEUS; GENETIC CONSERVATION; NESBASE; NONHUMAN; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN EXPRESSION; REVIEW; SIGNAL TRANSDUCTION; SWISS-PROT; VALIDATION PROCESS;

ACTIVE TRANSPORT, CELL NUCLEUS; AMINO ACID MOTIFS; ANIMALS; CONSERVED SEQUENCE; DATABASES, PROTEIN; LEUCINE; PROTEINS; SEQUENCE ALIGNMENT;

NES;

EID: 0037252650     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg101     Document Type: Review

References (26)

1. Rout,M. and Aitchison,J. (2001) The nuclear pore complex as a transport machine. J. Biol. Chem., 276, 16593-16596.
2. Mattaj,I. and Englmeier,L. (1998) Nucleocytoplasmic transport: the soluble phase. Annu. Rev. Biochem., 67, 265-306.
3. Gorlich,D. and Kutay,U. (1999) Transport between the cell nucleus and the cytoplasm. Annu. Rev. Cell Dev. Biol., 15, 607-660.
4. Nakielny,S. and Dreyfuss,G. (1999) Transport of proteins and RNAs in and out of the nucleus. Cell, 99, 677-690.
5. Kuersten,S., Ohno,M. and Mattaj,I. (2001) Nucleocytoplasmic transport: Ran, beta and beyond. Trends Cell Biol., 11, 497-503.
6. Dingwall,C. and Laskey,R. (1991) Nuclear targeting sequences-a consensus? Trends Biochem. Sci., 16, 478-481.
7. Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
8. Wu,C., Huang,H., Arminski,L., Castro-Alvear,J., Chen,Y., Hu,Z., Ledley,R., Lewis,K., Mewes,H., Orcutt,B., Suzek,B., Tsugita,A., Vinayaka,C., Yeh,L., Zhang,J. and Barker,W. (2002) The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res., 30, 35-37.
9. Cokol,M., Nair,R. and Rost,B. (2000) Finding nuclear localization signals. EMBO Rep., 1, 411-415.
10. Fischer,U., Huber,J., Boelens,W., Mattaj,I. and Luhrmann,R. (1995) The HIV-1 Rev activation domain is a nuclear export signal that accesses an export pathway used by specific cellular RNAs. Cell, 82, 475-483.
11. Wen,W., Meinkoth,J., Tsien,R. and Taylor,S. (1995) Identification of a signal for rapid export of proteins from the nucleus. Cell, 82, 463-473.
12. Fornerod,M., Ohno,M., Yoshida,M. and Mattaj,I. (1997) CRM1 is an export receptor for leucine-rich nuclear export signals. Cell, 90, 1051-1060.
13. Stade,K., Ford,C., Guthrie,C. and Weis,K. (1997) Exportin 1 (Crm1p) is an essential nuclear export factor. Cell, 90, 1041-1050.
14. Neville,M., Stutz,F., Lee,L., Davis,L.I. and Rosbash,M. (1997) The importin-beta family member Crm1p bridges the interaction between Rev and the nuclear pore complex during nuclear export. Curr. Biol., 7, 767-775.
15. Ossareh-Nazari,B., Bachelerie,F. and Dargemont,C. (1997) Evidence for a role of CRM1 in signal-mediated nuclear protein export. Science, 278, 141-144.
16. Fukuda,M., Asano,S., Nakamura,T., Adachi,M., Yoshida,M., Yanagida,M. and Nishida,E. (1997) CRM1 is responsible for intracellular transport mediated by the nuclear export signal. Nature, 390, 308-311.
17. Haasen,D., Kohler,C., Neuhaus,G. and Merkle,T. (1999) Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana. Plant J., 20, 695-705.
18. Neville,M. and Rosbash,M. (1999) The NES-Crm1p export pathway is not a major mRNA export route in Saccharomyces cerevisiae. EMBO J., 18, 3746-3756.
19. Ossareh-Nazari,B., Gwizdek,C. and Dargemont,C. (2001) Protein export from the nucleus. Traffic, 2, 684-689.
20. Holaska,J., Black,B., Love,D., Hanover,J., Leszyk,J. and Paschal,B. (2001) Calreticulin is a receptor for nuclear export. J. Cell Biol., 152, 127-140.
21. Gama-Carvalho,M. and Carmo-Fonseca,M. (2001) The rules and roles of nucleocytoplasmic shuttling proteins. FEBS Lett., 498, 157-163.
22. Hope,T. (1999) The ins and outs of HIV. Rev. Arch. Biochem, Biophys., 365, 186-191.
23. Bogerd,H., Fridell,R., Benson,R., Hua,J. and Cullen,B. (1996) Protein sequence requirements for function of the human T-cell leukemia virus type 1 Rex nuclear export signal delineated by a novel in vivo randomization-selection assay. Mol. Cell. Biol., 16, 4207-4214.
24. Schneider,T.D. and Stephens,R.M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
25. Shannon,C.E. (1948) A mathematical theory of communication. Bell System Tech. J., 27, 379-423, 623-656.
26. Thompson,J., Higgins,D. and Gibson,T. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.