WorfDB: The Caenorhabditis elegans ORFeome Database

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 237-240

  Vaglio, Philippe ^a   Lamesch, Philippe ^a   Reboul, Jérôme ^a   Rual, Jean François ^a   Martinez, Monica ^a   Hill, David ^a   Vidal, Marc ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAENORHABDITIS ELEGANS; EXON; EXPRESSED SEQUENCE TAG; GENETIC CODE; GENETIC DATABASE; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; REVIEW; WORM ORFEOME DATABASE;

ANIMALS; CAENORHABDITIS ELEGANS; CAENORHABDITIS ELEGANS PROTEINS; DATABASES, NUCLEIC ACID; GENOME; INFORMATION STORAGE AND RETRIEVAL; OPEN READING FRAMES;

CAENORHABDITIS; CAENORHABDITIS ELEGANS; INVERTEBRATA; METAZOA; NEMATODA;

EID: 0037250296     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg092     Document Type: Review

References (18)

1. The C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: a platform for investigating biology. Science, 282, 2012-2018.
2. Sternberg,P.W. (2001) Working in the post-genomic C. elegans world. Cell, 105, 173-176.
3. Vidal,M. (2001) A biological atlas of functional maps. Cell, 104, 333-339.
4. Reinke,V., Smith,H.E., Nance,J., Wang,J., Van Doren,C., Begley,R., Jones,S.J., Davis,E.B., Scherer,S., Ward,S. and Kim,S.K. (2000) A global profile of germline gene expression in C. elegans. Mol. Cell, 6, 605-616.
5. Fraser,A.G., Kamath,R.S., Zipperlen,P., Martinez-Campos,M., Sohrmann,M. and Ahringer,J. (2000) Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature, 408, 325-330.
6. Gonczy,P., Echeverri,G., Oegema,K., Coulson,A., Jones,S.J., Copley,R.R., Duperon,J., Oegema,J., Brehm,M., Cassin,E., Hannak,E., Kirkham,M., Pichler,S., Flohrs,K., Goessen,A., Leidel,S., Alleaume,A.M., Martin,C., Ozlu,N., Bork,P. and Hyman,A.A. (2000) Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III. Nature, 408, 331-336.
7. Maeda,I., Kohara,Y., Yamamoto,M. and Sugimoto,A. (2001) Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr. Biol., 11, 171-176.
8. Piano,F., Schetter,A.J., Mangone,M., Stein,L. and Kemphues,K.J. (2000) RNAi analysis of genes expressed in the ovary of Caenorhabditis elegans. Curr. Biol., 10, 1619-1622.
9. Walhout,A.J.M., Sordella,R., Lu,X., Hartley,J.L., Temple,G.F., Brasch,M.A., Thierry-Mieg,N. and Vidal,M. (2000) Protein interaction mapping in C. elegans using proteins involved in vulval development. Science, 287, 116-122.
10. Davy,A., Bello,P., Thierry-Mieg,N., Vaglio,P., Hitti,J., Doucette-Stamm,L., Thierry-Mieg,D., Reboul,J., Boulton,S., Walhout,A.J., Coux,O. and Vidal,M. (2001) A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. EMBO Rep., 2, 821-828.
11. Boulton,S.J., Gartner,A., Reboul,J., Vaglio,P., Dyson,N., Hill,D.E. and Vidal,M. (2002) Combined functional genomic maps of the C. elegans DNA damage response. Science, 295, 127-131.
12. Chance,M.R., Bresnick,A.R., Burley,S.K., Jiang,J.S., Lima,C.D., Sali,A., Almo,S.C., Bonanno,J.B., Buglino,J.A., Boulton,S., Chen,H., Eswar,N., He,G., Huang,R., Ilyin,V., McMahan,L., Pieper,U., Ray,S., Vidal,M. and Wang,L.K. (2002) Structural genomics: a pipeline for providing structures for the biologist. Protein Sci., 11, 723-738.
13. Zhu,H., Klemic,J.F., Chang,S., Bertone,P., Casamayor,A., Klemic,K.G., Smith,D., Gerstein,M., Reed,M.A. and Snyder,M. (2000) Analysis of yeast protein kinases using protein chips. Nature Genet., 26, 283-289.
14. Martzen,M.R., McCraith,S.M., Spinelli,S.L., Torres,F.M., Fields,S., Grayhack,E.J. and Phizicky,E.M. (1999) A biochemical genomics approach for identifying genes by the activity of their products. Science, 286, 1153-1155.
15. Ho,Y., Gruhler,A., Heilbut,A., Bader,G.D., Moore,L., Adams,S.L., Millar,A., Taylor,P., Bennett,K., Boutilier,K., Yang,L., Wolting,C., Donaldson,I., Schandorff,S., Shewnarane,J., Vo,M., Taggart,J., Goudreault,M., Muskat,B., Alfarano,C., Dewar,D., Lin,Z., Michalickova,K., Willems,A.R., Sassi,H., Nielsen,P.A., Rasmussen,K.J., Andersen,J.R., Johansen,L.E., Hansen,L.H., Jespersen,H., Podtelejnikov,A., Nielsen,E., Crawford,J., Poulsen,V., Sorensen,B.D., Matthiesen,J., Hendrickson,R.C., Gleeson,F., Pawson,T., Moran,M.F., Durocher,D., Mann,M., Hogue,C.W., Figeys,D. and Tyers,M. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature, 415, 180-183.
16. Gavin,A.C., Bosche,M., Krause,R., Grandi,P., Marzioch,M., Bauer,A., Schultz,J., Rick,J.M., Michon,A.M., Cruciat,C.M., Remor,M., Hofert,C., Schelder,M., Brajenovic,M., Ruffner,H., Merino,A., Klein,K., Hudak,M., Dickson,D., Rudi,T., Gnau,V., Bauch,A., Bastuck,S., Huhse,B., Leutwein,C., Heurtier,M.A., Copley,R.R., Edelmann,A., Querfurth,E., Rybin,V., Drewes,G., Raida,M., Bouwmeester,T., Bork,P., Seraphin,B., Kuster,B., Neubauer,G. and Superti-Furga,G. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415, 141-147.
17. Reboul,J., Vaglio,P., Tzellas,N., Thierry-Mieg,N., Moore,T., Jackson,C., Shin-i,T., Kohara,Y., Thierry-Mieg,D., Thierry-Mieg,J., Lee,H., Hitti,J., Doucette-Stamm,L., Hartley,J.L., Temple,G.F., Brasch,M.A., Vandenhaute,J., Lamesch,P.E., Hill,D.E. and Vidal,M. (2001) Open-reading-frame sequence tags (OSTs) support the existence of at least 17 300 genes in C. elegans. Nature Genet., 27, 332-336.
18. Hillier,L. and Green,P. (1991) OSP: a computer program for choosing PCR and DNA sequencing primers. PCR Methods Appl., 1, 124-128.