메뉴 건너뛰기




Volumn 325, Issue 3, 2003, Pages 433-442

Solution structure of a DNA duplex containing 8-hydroxy-2′-deoxyguanosine opposite deoxyguanosine

Author keywords

8 oxo guanine; DNA repair; MutY; Oxidative DNA damage; Transversions

Indexed keywords

8 HYDROXYDEOXYGUANOSINE; COMPLEMENTARY DNA; DEOXYGUANOSINE; DOUBLE STRANDED DNA;

EID: 0037229050     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)01272-X     Document Type: Article
Times cited : (26)

References (40)
  • 1
    • 0024841281 scopus 로고
    • Structural and conformational analyses of 8-hydroxy-2′-deoxyguanosine
    • Culp, S. J., Cho, B. P., Kadlubar, F. F. & Evans, F. E. (1989). Structural and conformational analyses of 8-hydroxy-2′-deoxyguanosine. Chem. Res. Toxicol. 2, 416-422.
    • (1989) Chem. Res. Toxicol. , vol.2 , pp. 416-422
    • Culp, S.J.1    Cho, B.P.2    Kadlubar, F.F.3    Evans, F.E.4
  • 3
    • 0033741876 scopus 로고    scopus 로고
    • Single 8-oxo-guanine and 8-oxo-adenine lesions induce marked changes in the backbone structure of a 25-base DNA strand
    • Malins, D. C., Polissar, N. L., Ostrander, G. K. & Vinson, M. A. (2000). Single 8-oxo-guanine and 8-oxo-adenine lesions induce marked changes in the backbone structure of a 25-base DNA strand. Proc. Natl. Acad. Sci. USA, 97, 12442-12445.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12442-12445
    • Malins, D.C.1    Polissar, N.L.2    Ostrander, G.K.3    Vinson, M.A.4
  • 4
    • 0023647116 scopus 로고
    • Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues
    • Kuchino, Y., Mori, F., Kasai, H., Inoue, H., Iwai, S., Miura, K. et al. (1987). Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues. Nature, 327, 77-79.
    • (1987) Nature , vol.327 , pp. 77-79
    • Kuchino, Y.1    Mori, F.2    Kasai, H.3    Inoue, H.4    Iwai, S.5    Miura, K.6
  • 5
    • 0025981359 scopus 로고
    • Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
    • Shibutani, S., Takeshita, M. & Grollman, A. P. (1991). Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature, 349, 431-434.
    • (1991) Nature , vol.349 , pp. 431-434
    • Shibutani, S.1    Takeshita, M.2    Grollman, A.P.3
  • 6
    • 0028063032 scopus 로고
    • DNA sequence analysis of spontaneous and gamma-radiation (anoxic)-induced lacId mutations in Escherichia coli umuC122:: Tn5: Differential requirement for umuC at G·C versus A·T sites and for the production of transversions versus transitions
    • Sargentini, N. J. & Smith, K. C. (1994). DNA sequence analysis of spontaneous and gamma-radiation (anoxic)-induced lacId mutations in Escherichia coli umuC122:: Tn5: Differential requirement for umuC at G·C versus A·T sites and for the production of transversions versus transitions. Mutat Res. 311, 175-189.
    • (1994) Mutat Res. , vol.311 , pp. 175-189
    • Sargentini, N.J.1    Smith, K.C.2
  • 7
    • 0029124183 scopus 로고
    • Methylene blue-mediated photo-oxidation of 7,8-dihydro-8-oxo-2′-deoxyguanosine
    • Buchko, G. W., Wagner, J. R., Cadet, J., Raoul, S. & Weinfeld, M. (1995). Methylene blue-mediated photo-oxidation of 7,8-dihydro-8-oxo-2′-deoxyguanosine. Biochem. Biophys. Acta, 1263, 17-24.
    • (1995) Biochem. Biophys. Acta , vol.1263 , pp. 17-24
    • Buchko, G.W.1    Wagner, J.R.2    Cadet, J.3    Raoul, S.4    Weinfeld, M.5
  • 8
    • 0032533794 scopus 로고    scopus 로고
    • The presence of two distinct 8-oxo-guanine repair enzyme in human cells: Their complimentary roles in preventing mutation
    • Hazra, T. K., Izumi, T., Maidt, L., Floyd, R. A. & Mitra, S. (1998). The presence of two distinct 8-oxo-guanine repair enzyme in human cells: Their complimentary roles in preventing mutation. Nucl. Acids Res. 26, 5116-5122.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 5116-5122
    • Hazra, T.K.1    Izumi, T.2    Maidt, L.3    Floyd, R.A.4    Mitra, S.5
  • 9
    • 0032531869 scopus 로고    scopus 로고
    • Escherichia coli MutY protein has a guanine-DNA glycosylase that acts on 7,8-dihydro-8-oxo-guanine:guanine mispair to prevent spontaneous G:C → C:G transversions
    • Zhang, Q. M., Ishikawa, N., Nakahara, T. & Yonei, S. (1998). Escherichia coli MutY protein has a guanine-DNA glycosylase that acts on 7,8-dihydro-8-oxo-guanine:guanine mispair to prevent spontaneous G:C → C:G transversions. Nucl. Acids Res. 26, 4669-4675.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 4669-4675
    • Zhang, Q.M.1    Ishikawa, N.2    Nakahara, T.3    Yonei, S.4
  • 10
    • 0033555373 scopus 로고    scopus 로고
    • Insertion of dGMP and damp during in vitro DNA synthesis opposite an oxidized form of 7,8-dihydro-8-oxoguanine
    • Duarte, V., Muller, J. G. & Burrows, C. J. (1999). Insertion of dGMP and damp during in vitro DNA synthesis opposite an oxidized form of 7,8-dihydro-8-oxoguanine. Nucl. Acids Res. 27, 2247-2249.
    • (1999) Nucl. Acids Res. , vol.27 , pp. 2247-2249
    • Duarte, V.1    Muller, J.G.2    Burrows, C.J.3
  • 11
    • 0035339684 scopus 로고    scopus 로고
    • Repair of hydantoins, one electron oxidation product of 8-oxoguanine, by DNA glycosylases of Escherichia coli
    • Hazra, T. K., Muller, J. G., Manuel, R. C., Burrows, C. J., Lloyd, R. S. & Mitra, S. (2001). Repair of hydantoins, one electron oxidation product of 8-oxoguanine, by DNA glycosylases of Escherichia coli. Nucl. Acids Res. 29, 1967-1974.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 1967-1974
    • Hazra, T.K.1    Muller, J.G.2    Manuel, R.C.3    Burrows, C.J.4    Lloyd, R.S.5    Mitra, S.6
  • 12
    • 0025891866 scopus 로고
    • NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG). Opposite deoxyadenosine in a DNA duplex. 8-oxo-7H-dG(syn):dA(anti). Alignment at lesion site
    • Kouchakdjian, M., Bodepudi, V., Shibutani, S., Eisenberg, M., Johnson, F., Grollman, A. P. & Patel, D. J. (1991). NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG). Opposite deoxyadenosine in a DNA duplex. 8-oxo-7H-dG(syn):dA(anti). Alignment at lesion site. Biochemistry, 30, 1403-1412.
    • (1991) Biochemistry , vol.30 , pp. 1403-1412
    • Kouchakdjian, M.1    Bodepudi, V.2    Shibutani, S.3    Eisenberg, M.4    Johnson, F.5    Grollman, A.P.6    Patel, D.J.7
  • 16
    • 0027425942 scopus 로고
    • Base-pairing of 8-oxoguanosine and 8-oxo-2′-deoxyguanosine with 2′-deoxyadenosine, 2′-deoxycytosine, 2′-deoxyguanosine, and thymidine
    • Gannett, P. M. & Sura, T. P. (1993). Base-pairing of 8-oxoguanosine and 8-oxo-2′-deoxyguanosine with 2′-deoxyadenosine, 2′-deoxycytosine, 2′-deoxyguanosine, and thymidine. Chem. Res. Toxicol. 6, 690-700.
    • (1993) Chem. Res. Toxicol. , vol.6 , pp. 690-700
    • Gannett, P.M.1    Sura, T.P.2
  • 17
    • 0019387686 scopus 로고
    • Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure
    • Dickerson, R. E. & Drew, H. R. (1981). Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure. J. Mol. Biol. 149, 761-786.
    • (1981) J. Mol. Biol. , vol.149 , pp. 761-786
    • Dickerson, R.E.1    Drew, H.R.2
  • 18
    • 0033600794 scopus 로고    scopus 로고
    • Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-AT-T-C-G-C-G
    • Chiu, T. K., Kaczor-Grzeskowiak, M. & Dickerson, R. E. (1999). Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-AT-T-C-G-C-G. J. Mol. Biol. 292, 589-608.
    • (1999) J. Mol. Biol. , vol.292 , pp. 589-608
    • Chiu, T.K.1    Kaczor-Grzeskowiak, M.2    Dickerson, R.E.3
  • 21
    • 0015528142 scopus 로고
    • Studies on the conformation of purine nucleosides and their ′-phosphates
    • Ikehara, M., Uesugi, S. & Yoshida, K. (1972). Studies on the conformation of purine nucleosides and their ′-phosphates. Biochemistry, 11, 830-836.
    • (1972) Biochemistry , vol.11 , pp. 830-836
    • Ikehara, M.1    Uesugi, S.2    Yoshida, K.3
  • 22
    • 0017772412 scopus 로고
    • Carbon-13 magnetic resonance spectra of 8-substituted purine nucleosides. Characteristic shifts for the syn conformation
    • Uesugi, S. & Ikehara, M. (1977). Carbon-13 magnetic resonance spectra of 8-substituted purine nucleosides. Characteristic shifts for the syn conformation. J. Am. Chem. Soc. 99, 3250-3253.
    • (1977) J. Am. Chem. Soc. , vol.99 , pp. 3250-3253
    • Uesugi, S.1    Ikehara, M.2
  • 25
    • 44049117796 scopus 로고
    • Proton-detected hetero-TOCSY experiments with application to nucleic acids
    • Kellogg, G. W. (1992). Proton-detected hetero-TOCSY experiments with application to nucleic acids. J. Magn. Reson. 98, 176-182.
    • (1992) J. Magn. Reson. , vol.98 , pp. 176-182
    • Kellogg, G.W.1
  • 26
    • 0024471947 scopus 로고
    • Two-dimensional H-1 and P-31 NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex
    • Nikonowicz, E., Roongta, V. A., Jones, C. R. & Gorenstein, D. G. (1989). Two-dimensional H-1 and P-31 NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex. Biochemistry, 28, 8714-8725.
    • (1989) Biochemistry , vol.28 , pp. 8714-8725
    • Nikonowicz, E.1    Roongta, V.A.2    Jones, C.R.3    Gorenstein, D.G.4
  • 27
    • 0001937105 scopus 로고
    • 1H 2-dimensional NMR and NOESY-distance restrained molecular dynamics methodology for defining sequence-specific variations in duplex oligonucleotides; a comparison of NOESY two-spin and relaxation rate matrix analysis
    • (Bush, C. A., ed.), JAI Press, Greenwich, CT
    • 1H 2-dimensional NMR and NOESY-distance restrained molecular dynamics methodology for defining sequence-specific variations in duplex oligonucleotides; a comparison of NOESY two-spin and relaxation rate matrix analysis. In Advances in Biophysical Chemistry (Bush, C. A., ed.), pp. 47-124, JAI Press, Greenwich, CT.
    • (1990) Advances in Biophysical Chemistry , pp. 47-124
    • Gorenstein, D.G.1    Meadows, R.P.2    Metz, J.T.3    Nikonowicz, E.4    Post, C.B.5
  • 28
    • 0024058085 scopus 로고
    • The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
    • Lavery, R. & Sklenar, H. (1988). The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dynam. 6, 63-91.
    • (1988) J. Biomol. Struct. Dynam. , vol.6 , pp. 63-91
    • Lavery, R.1    Sklenar, H.2
  • 30
    • 0026763057 scopus 로고
    • Conformational properties of the G-G mismatch in d(CGCGAATTGGCG) 2 determined by NMR
    • Borden, K. L. B., Jenkins, T. C., Skelly, J. V., Brown, T. & Lane, A. N. (1992). Conformational properties of the G-G mismatch in d(CGCGAATTGGCG) 2 determined by NMR. Biochemistry, 31, 5411-5421.
    • (1992) Biochemistry , vol.31 , pp. 5411-5421
    • Borden, K.L.B.1    Jenkins, T.C.2    Skelly, J.V.3    Brown, T.4    Lane, A.N.5
  • 31
    • 0017148262 scopus 로고
    • Complementary base-pairing and the origin of substitution mutations
    • Topal, M. D. & Fresco, J. R. (1976). Complementary base-pairing and the origin of substitution mutations. Nature, 263, 285-289.
    • (1976) Nature , vol.263 , pp. 285-289
    • Topal, M.D.1    Fresco, J.R.2
  • 32
    • 0026338118 scopus 로고
    • Solution conformation of an oligonucleotide containing a G·G mismatch determined by nuclear magnetic resonance and molecular mechanics
    • Cognet, J. A., Gabarro-Arpa, J., Le Bret, M., van der Marel, G. A., van Boom, J. H. & Fazakerley, G. V. (1991). Solution conformation of an oligonucleotide containing a G·G mismatch determined by nuclear magnetic resonance and molecular mechanics. Nucl. Acids Res. 25, 6771-6779.
    • (1991) Nucl. Acids Res. , vol.25 , pp. 6771-6779
    • Cognet, J.A.1    Gabarro-Arpa, J.2    Le Bret, M.3    Van der Marel, G.A.4    Van Boom, J.H.5    Fazakerley, G.V.6
  • 34
    • 33845551411 scopus 로고
    • Geometry of the N-H⋯O C bond. Lone-pair directionality
    • Taylor, R., Kennard, O. & Versichel, W. (1983). Geometry of the N-H⋯O C bond. Lone-pair directionality. J. Am. Chem. Soc. 105, 5761-5766.
    • (1983) J. Am. Chem. Soc. , vol.105 , pp. 5761-5766
    • Taylor, R.1    Kennard, O.2    Versichel, W.3
  • 35
    • 0026727870 scopus 로고
    • Conformation of guanine-8-oxoadenine base-pairs in the crystal structure of d(CGCGAATT(O8A)GCG)
    • Leonard, G. A., Guy, A., Brown, T., Teoule, R. & Hunter, W. N. (1992). Conformation of guanine-8-oxoadenine base-pairs in the crystal structure of d(CGCGAATT(O8A)GCG). Biochemistry, 31, 8415-8420.
    • (1992) Biochemistry , vol.31 , pp. 8415-8420
    • Leonard, G.A.1    Guy, A.2    Brown, T.3    Teoule, R.4    Hunter, W.N.5
  • 36
    • 33845471462 scopus 로고
    • Geometry of the N-H⋯O C bond. Three-center and four-center bonds
    • Taylor, R., Kennard, O. & Versichel, W. (1984). Geometry of the N-H⋯O C bond. Three-center and four-center bonds. J. Am. Chem. Soc. 106, 244-248.
    • (1984) J. Am. Chem. Soc. , vol.106 , pp. 244-248
    • Taylor, R.1    Kennard, O.2    Versichel, W.3
  • 37
    • 0000455182 scopus 로고
    • On the evaluation of interproton distances for three-dimensional structural analysis by NMR using a relaxation rate matrix analysis
    • Post, C. B., Meadows, R. P. & Gorenstein, D. G. (1990). On the evaluation of interproton distances for three-dimensional structural analysis by NMR using a relaxation rate matrix analysis. J. Am. Chem. Soc. 112, 6796-6803.
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 6796-6803
    • Post, C.B.1    Meadows, R.P.2    Gorenstein, D.G.3
  • 39
    • 33846823909 scopus 로고
    • Particle Mesh Ewald - An n log(n) method for Ewald sums in large systems
    • Darden, T. A., York, D. & Pedersen, L. G. (1993). Particle Mesh Ewald - An n log(n) method for Ewald sums in large systems. J. Chem. Phys. 98, 10089-10092.
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.A.1    York, D.2    Pedersen, L.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.