-
1
-
-
0000540861
-
The performance of the NJ method of phylogeny reconstruction
-
B. Mirkin, F. R. McMorris, F. S. Roberts, and A. Rzhetsky, eds. American Mathematical Society, Providence, R.I.
-
Atteson, K. 1997. The performance of the NJ method of phylogeny reconstruction. Pp. 133-148 in B. Mirkin, F. R. McMorris, F. S. Roberts, and A. Rzhetsky, eds. Mathematical hierarchies and biology, DIMACS series in discrete mathematics and theoretical computer science, Vol. 37. American Mathematical Society, Providence, R.I.
-
(1997)
Mathematical Hierarchies and Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science
, vol.37
, pp. 133-148
-
-
Atteson, K.1
-
2
-
-
0023359361
-
Asynchronous distance between homologous DNA sequences
-
Barry, D., and J. A. Hartigan. 1987. Asynchronous distance between homologous DNA sequences. Biometrics 43:261-276.
-
(1987)
Biometrics
, vol.43
, pp. 261-276
-
-
Barry, D.1
Hartigan, J.A.2
-
3
-
-
0033984609
-
Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
-
Bruno, W. J., N. D. Socci, and A. L. Halpern. 2000. Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol. Biol. Evol. 17:189-197.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 189-197
-
-
Bruno, W.J.1
Socci, N.D.2
Halpern, A.L.3
-
5
-
-
0033982941
-
The European large subunit ribosomal RNA database
-
De Rijk, P., J. Wuyts, Y. Van De Peer, T. Winklemans, and R. De Wachter. 2000. The European large subunit ribosomal RNA database. Nucleic Acids Res. 28:177-178 [sequence data available via http://rrna.uia.ac.be/lsu].
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 177-178
-
-
De Rijk, P.1
Wuyts, J.2
Van De Peer, Y.3
Winklemans, T.4
De Wachter, R.5
-
6
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
7
-
-
0027526039
-
Statistical tests of models of DNA substitution
-
Goldman, N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-198.
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 182-198
-
-
Goldman, N.1
-
8
-
-
0025873443
-
On the maximum likelihood method in molecular phylogenetics
-
Hasegawa, M., H. Kishino, and N. Saitou. 1991. On the maximum likelihood method in molecular phylogenetics. J. Mol. Evol. 32:443-445.
-
(1991)
J. Mol. Evol.
, vol.32
, pp. 443-445
-
-
Hasegawa, M.1
Kishino, H.2
Saitou, N.3
-
9
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
10
-
-
0034522921
-
RNA secondary structure - Physical and computational aspects
-
Higgs, P. G. 2000. RNA secondary structure - physical and computational aspects. Q. Rev. Biophys. 33:199-253.
-
(2000)
Q. Rev. Biophys.
, vol.33
, pp. 199-253
-
-
Higgs, P.G.1
-
11
-
-
0036728808
-
Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution
-
Jow, H., C. Hudelot, M. Rattray, and P. G. Higgs. 2002. Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution. Mol. Biol. Evol. 19:1591-1601.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1591-1601
-
-
Jow, H.1
Hudelot, C.2
Rattray, M.3
Higgs, P.G.4
-
12
-
-
0000732090
-
Evolution of protein molecules
-
H. N. Munro, ed. Academic Press, New York
-
Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pp. 21-123 in H. N. Munro, ed. Mammalian protein metabolism III. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism III
, pp. 21-123
-
-
Jukes, T.H.1
Cantor, C.R.2
-
13
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
14
-
-
0015488244
-
On the stochastic model for estimation of mutational distance between homologous proteins
-
Kimura, M., and T. Ohta. 1972. On the stochastic model for estimation of mutational distance between homologous proteins. J. Mol. Evol. 2:87-90.
-
(1972)
J. Mol. Evol.
, vol.2
, pp. 87-90
-
-
Kimura, M.1
Ohta, T.2
-
15
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
-
Lake, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
16
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave, C., G. Preparata, C. Saccone, and G. Serio. 1984. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20:86-93.
-
(1984)
J. Mol. Evol.
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
17
-
-
0003421005
-
-
Sinauer Associates, Sunderland, Mass
-
Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, Mass.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
18
-
-
0001590039
-
Statistical methods for testing molecular phylogenies
-
M. M. Miyamoto and J. Cracraft, eds. Oxford University Press, New York
-
Li, W.-H., and M. Gouy. 1991. Statistical methods for testing molecular phylogenies. Pp. 249-277 in M. M. Miyamoto and J. Cracraft, eds. Phylogenetic analysis of DNA sequences. Oxford University Press, New York.
-
(1991)
Phylogenetic Analysis of DNA Sequences
, pp. 249-277
-
-
Li, W.-H.1
Gouy, M.2
-
19
-
-
0029886750
-
Estimating evolutionary distances between DNA sequences
-
F. Russell, ed. Academic Press, San Diego
-
Li, W.-H., and X. Gu. 1996. Estimating evolutionary distances between DNA sequences. Pp. 449-459 in F. Russell, ed. Methods in enzymology. Academic Press, San Diego.
-
(1996)
Methods in Enzymology
, pp. 449-459
-
-
Li, W.-H.1
Gu, X.2
-
20
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P. J., M. A. Steel, M. D, Hendy, and D. Penny. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
21
-
-
0021927430
-
Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes
-
Nei, M., J. C. Stephens, and N. Saitou. 1985. Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes. Mol. Biol. Evol. 2:66-85.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 66-85
-
-
Nei, M.1
Stephens, J.C.2
Saitou, N.3
-
22
-
-
0025267792
-
The general stochastic model of nucleotide substitution
-
Rodriguez, F., J. L. Oliver, A. Marin, and J. R. Medina. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142:485-501.
-
(1990)
J. Theor. Biol.
, vol.142
, pp. 485-501
-
-
Rodriguez, F.1
Oliver, J.L.2
Marin, A.3
Medina, J.R.4
-
23
-
-
0000329594
-
Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum evolution and neighbor-joining methods of phylogenetic tree construction in obtaining the correct tree
-
Saitou, N., and T. Imanishi. 1989. Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum evolution and neighbor-joining methods of phylogenetic tree construction in obtaining the correct tree. Mol. Biol. Evol. 6:514-525.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 514-525
-
-
Saitou, N.1
Imanishi, T.2
-
24
-
-
0023375195
-
The neighbor joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-426.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-426
-
-
Saitou, N.1
Nei, M.2
-
25
-
-
0035156561
-
RNA sequence evolution with secondary structure constraints: Comparison of substitution rate models using maximum likelihood methods
-
Savill, N. J., D. C. Hoyle, and P. G. Higgs. 2001 RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum likelihood methods. Genetics 157:399-411.
-
(2001)
Genetics
, vol.157
, pp. 399-411
-
-
Savill, N.J.1
Hoyle, D.C.2
Higgs, P.G.3
-
26
-
-
0024009105
-
Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree
-
Sourdis, J., and M. Nei. 1988. Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree. Mol. Biol. Evol. 5:298-311.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 298-311
-
-
Sourdis, J.1
Nei, M.2
-
27
-
-
43949153645
-
Recovering a tree from the leaf colourations it generates under a Markov model
-
Steel, M. A. 1994. Recovering a tree from the leaf colourations it generates under a Markov model. Appl. Math. Lett. 7:19-24.
-
(1994)
Appl. Math. Lett.
, vol.7
, pp. 19-24
-
-
Steel, M.A.1
-
30
-
-
0029836454
-
Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
-
Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
31
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura, K., and M. Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
32
-
-
0028874337
-
Neighbor joining and maximum likelihood with RNA sequences: Addressing the interdependence of sites
-
Tillier, E. R. M., and R. A. Collins. 1995. Neighbor joining and maximum likelihood with RNA sequences: addressing the interdependence of sites. Mol. Biol. Evol. 12:7-15.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 7-15
-
-
Tillier, E.R.M.1
Collins, R.A.2
-
33
-
-
0033970706
-
The European small subunit ribosomal RNA database
-
Van De Peer, Y., P. De Rijk, J. Wuyts, T. Winklemans, and R. De Wachter. 2000. The European small subunit ribosomal RNA database. Nucleic Acids Res. 28:175-176 [sequence data available via http://rrna.uia.ac.be/ssu].
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 175-176
-
-
Van De Peer, Y.1
De Rijk, P.2
Wuyts, J.3
Winklemans, T.4
De Wachter, R.5
-
34
-
-
0028108336
-
Estimation of evolutionary distances between nucleotide sequences
-
Zharkikh, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 39:315-329.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 315-329
-
-
Zharkikh, A.1
|