The phylogeny of basal peristomate mosses: Evidence from cpDNA, and implications for peristome evolution

Systematic Botany

Volumn 28, Issue 1, 2003, Pages 24-38

  Magombo, Zacharia L K ^a  

^a MISSOURI BOTANICAL GARDEN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRYOPHYTA; BRYOPHYTES; BUXBAUMIACEAE; DIPHYSCIACEAE; POLYTRICHACEAE; PTERIDOPHYTA; TETRAPHIDACEAE;

EID: 0037220873     PISSN: 03636445     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (111)

1. BECKERT, S., S. STEIHAUSER, H. MUHLE and V. KNOOP. 1999. A molecular phylogeny of bryophytes based on nucleotide sequences of the mitochondrial nad5 gene. Plant Systematics and Evolution 218: 179-192.
2. BLOMQUIST, H. L. and L. L. ROBERTSON. 1941. The development of the peristome in Aulacomnium heterostichum. Bulletin of the Torrey Botanical Club 65: 569-584.
3. BRAITHWAITE, R. 1887. The British Moss Flora. Vol. 1. Acrocarpi I. Reeve and Co. London.
4. BREMER, B. 1996. Combined and separate data analyses of morphological and molecular data in the plant family Rubiaceae. Cladistics 12: 21-40.
5. BRIDEL-BRIDERI, S. E. 1826. Bryologia Universa seu Systematica ad Novam Methodum Dispositio, Historia et Decriptio Omnium Muscorum Frondosorum Hucusque Cognitorum cum Synonymia ex Auctoribus Probatissimis. Volume 1. Barth. Lipsiae.
6. _ 1827. Byologia Universa seu Systematica ad Novam Methodum Dispositio, Historia et Decriptio Omnium Muscorum Frondosorum Hucusque Cognitorum cum Synonymia ex Auctoribus Probatissimis. Volume 2. Barth. Lipsiae.
7. BROTHERUS, V. F. 1909. Musci. Unterklasse Bryales. II. Pp. 277-700 in Die Natürlichen Pflanzenfamilien 1(3), eds. A. Engler and K. Prantl. Leipzig: Engelmann.
8. _ 1924. Musci. Pp. 143-478 in Die Natürlichen Pflanzenfamilien ed. 2, 10, eds. A. Engler and K. Prantl. Berlin: Duncker and Humblot.
9. _ 1925. Musci. Pp. 1-542. In Die Natürlichen Pflanzenfamilien ed. 2, 10, eds. A. Engler and K. Prantl. Berlin: Duncker and Humblot.
10. BRUMMITT, R. K. and C. E. POWELL. 1992. Authors of Plant Names. Royal Botanic Gardens, Kew, London.
11. BUCK, W. R. 1980. A generic revision of the Entodontaceae. Journal of the Hattori Botanical Laboratory 48: 71-159.
12. _ 1991. The basis for familial classification of pleurocarpous mosses. Advances in Bryology 4: 169-185.
13. _ and H. CRUM. 1990. An evaluation of familial limits among the genera traditionally aligned with Thuidiaceae and Leskeaceae. Contributions from the University of Michigan Herbarium 17: 55-69.
14. _ and B. GOFFINET. 2000. Morphology and classification of mosses. Pp. 21-123 in Bryophyte Biology, eds. A. J. Shaw and B. Goffinet. Cambridge: Cambridge University Press.
15. CAMPBELL, D. H., 1905. The Structure and Development of the Mosses and Ferns (Archegoniate). Ed. 1. MacMillan and Company, London.
16. CAVERS, F. 1911. The inter-relationship of the bryophyta. New Phytologist 10: 1-46.
17. CHOPRA, R. S. and P. D. SHARMA. 1958. Cyto-morphology of the genus Pogonatum Palis. Phytomorphology 8: 41-60.
18. _ and N. N. BHANDARI. 1959. Cyto-morphological studies of the genus Atrichum Palis. Research Bulletin of the Punjab University, Science 10: 221-231.
19. COX, C. J., B. GOFFINET, A. E. NEWTON, A. J. SHAW, and T. A. J. HEDDERSON. 2000. Phylogenetic relationships among the diplolepideous-alternate mosses (Bryidae) inferred from nuclear and chloroplast DNA sequences. Bryologist 103: 224-241.
20. CROSBY, M. R. 1974. Toward a revised classification of the Hookeriaceae (Musci). Journal of the Hattori Botanical Laboratory 38: 129-141.
21. _ 1977. Florschuetzia, a new genus of Buxbaumiaceae (Musci) from Southern Chile. Bryologist 80: 149-152.
22. _ 1978. Muscoflorschuetzia (Musci), a new name for Florschuetzia Crosby. Bryologist 81: 338.
23. _ 1980. The diversity and relationships of mosses. Pp. 115-129 in The Mosses of North America, ed. R. J. Taylor and A. E. Leviton. San Francisco: American Association for the Advancement of Sciences.
24. _, R. E. MAGILL, B. ALLEN and S. HE. 2000. A checklist of the mosses. Missouri Botanical Garden, St. Louis.
25. CRUM, H. A. and L. E. ANDERSON. 1981. Mosses of Eastern North America. Volume 1. Columbia University Press. New York.
26. CRUNDWELL, A. C. 1979. Rhizoids and moss taxonomy. Pp. 347-363 in Bryophyte Systematics, eds. G. C. S. Clarke and J. G. Duckett. London: Academic Press.
27. CUNNINGHAM, C. W. 1997. Is congruence between data partitioning a reliable predictor of phylogenetic accuracy? Empirically testing an alternative procedure for choosing among phylogenetic methods. Systematic Biology 46: 464-478.
28. DEGUCHI, H. 1975. Male inflorescence of Theriotia lorifolia and its Diphyscium type paraphyses. Proceeding of the Bryological Society of Japan 1: 120-122.
29. _, J. UENO and T. YAMAGUCHI. 1997. Taxonomic notes on Diphyscium species with unipapillose leaf cells. Journal of the Hattori Botanical Laboratory 82: 99-104.
30. DIXON, H. N. 1924. The student's Handbook of British mosses. 3rd ed. V. V. Sumfield, Eastbourne.
31. _ 1932. Classification of mosses. Pp. 397-412 in Manual of Bryology, ed. F. Verdoorn. Hague: Nijhoff.
32. DOYLE J. J. and J. L. DOYLE. 1987. A rapid DNA isolation procedure for small amount of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
33. _ and _. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
34. EDWARDS, R. S. 1984. Homologies and inter-relationships of moss peristomes. Classification of the Bryopsida. Pp. 658-695 in New Manual of Bryology, ed. R. M. Schuster. Nichinan: Hattori Botanical Laboratory.
35. ERICKSSON, T. 1998. AutoDecay ver. 4.0, Department of Botany Stockholm University, Stockholm.
36. FARRIS, J. S., M. KÄLLERSJÖ, A. G. KLUGE and C. BULT. 1994. Testing significance of congruence. Cladistics 10: 315-319.
37. FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
38. _ 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
39. FITCH, W. M. 1971. Towards defining the course of evolution: minimum change for a specified tree topology. Systematic Zoology 20: 406-416.
40. FLEISCHER, M. 1904. Die Musci der Flora von Buitenzorg (zugleich Laubmoosflora von Java). Volume I. Flore de Buitenzorg. Vième Partie. Brill, Leiden.
41. _ 1906. Die Musci der Flora von Buitenzorg (zugleich Laubmoosflora von Java). Volume II. Flore de Buitenzorg. Vième Partie. Brill, Leiden.
42. _ 1915. Die Musci der Flora von Buitenzorg (zugleich Laubmoosflora von Java). Volume III. Flore de Buitenzorg. Vième Partie. Brill, Leiden.
43. GARBARY, D. J. and K. S. RENZAGLIA. 1998. Bryophyte phylogeny and the evolution of land plants: evidence from development and ultrastructure. Pp. 45-63 in Bryology for the Twenty-first Century, eds. J. W. Bates, N. W. Ashton and J. G. Duckett. Leeds: Maney and British Bryological Society.
44. GOEBEL, K. 1895. Archegoniate Studien. VII. Über die Sporenausstreuung bei den Laubmoosen. Flora 80: 459-486.
45. GOFFINET, B. 2000. Origin and phylogenetic relationships of bryophytes. Pp. 124-149 in Bryophyte Biology, eds. A. J. Shaw and B. Goffinet. Cambridge: Cambridge University Press.
46. _, R. J. BAYER, and H. D. VITT. 1998. Circumscription and Phylogeny of the Orthotrichales (Bryopsida) inferred from rbcL sequence analysis. American Journal of Botany 85: 1324-1337.
47. _ and C. J. COX. 2000. Phylogenetic relationships among basal-most arthrodontous mosses with special emphasis on the evolutionary significance of the Funariineae. Bryologist 103: 212-223.
48. _, J. SHAW, L. E. ANDERSON, and B. D. MISHLER. 1999. Peristome development in mosses in relation to systematics and evolution. V. Diplolepideae: Orthotrichaceae. Bryologist 102: 581-594.
49. _, C. J. COX, A. J. SHAW, and T. A. HEDDERSON. 2001. The Bryophyta (Mosses): Systematic and Evolutionary Inferences from an rps4 gene (cpDNA) Phylogeny. Annals of Botany 87: 191-208.
50. GROUT, A. J. 1903. Mosses with a Hand-lens and Microscope. New York.
51. _ 1936. Moss Flora of North America. Vol.1. Part 1. Published by the Author, Newfane, Vermont.
52. HEDDERSON, T. A., R. L. CHAPMAN and W. L. ROOTE. 1996. Phylogenetic relationships of bryophytes inferred from nuclear-encoded rRNA gene sequences. Plant Systematics and Evolution 200: 213-224.
53. _, _, and C. COX. 1998. Bryophytes and the origins and diversification of land plants: new evidence from molecules. Pp. 65-67 in Bryology for the Twenty-first Century, eds. J. W. Bates, N. W. Ashton and J. G. Duckett. Leeds: Maney Publishing and British Bryological Society.
54. HORTON, D. G. 1982. A revision of the Encalyptaceae (Musci), with particular reference to the North American taxa. Part I. Journal of the Hattori Botanical Laboratory 53: 365-418.
55. _ 1983. A revision of the Encalyptaceae (Musci), with particular reference to the North American taxa. Part II. Journal of the Hattori Botanical Laboratory 54: 353-532.
56. HUELSENBECK, J. P. 1991. Tree-length distribution skewness: an indicator of phylogenetic information. Systematic Zoology 40: 257-270.
57. HYVÖNEN, J., T. A. HEDDERSON, G. L. S. MERRIL, J. G. GIBBINGS, and S. KOSKINEN. 1998. On the phylogeny of the Polytrichales. Bryologist 101: 489-504.
58. INGOLD, C. T. 1959. Peristome teeth and spore discharge in mosses. Transactions of the Botanical Society of Edinburgh 38: 76-88.
59. IWATSUKI, Z. 1976. Bryological miscellanies. Journal of the Hattori Botanical Laboratory 40: 139-149.
60. KENRICK, P. and P. R. CRANE. 1997. The Origin and Diversification of Early Land Plants. A Cladistic Study. Smithsonian Institute Press, Washington.
61. KOPONEN, A. 1982. On the structure and function of peristome in Splachnaceae. Journal of the Hattori Botanical Laboratory 53: 73-98.
62. LA FARGE-ENGLAND, C., B. D. MISHLER, J. A. WHEELER, D. P. WALL, K. JOHANNES, S. SCHAFFER, and A. J. SHAW. 2000. Phylogenetic relationships within the haplolepideous mosses. Bryologist 103: 257-276.
63. LAWTON, E. 1971. Moss Flora of the Pacific Northwest. Hattori Botanical Laboratory, Nichinan.
64. LAZARENKO, A. S. 1957. On some cases of singular behavior of the moss peristome. Bryologist 60: 14-17.
65. LEWIS, L. B. D. MISHLER, and R. VIGALYS. 1997. Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast genes rbcL. Molecular Phylogenetics and Evolution 7: 377-393.
66. MAGOMBO, Z. L. K. 2002C (unpubl.) Revision of the moss family Diphysciaceae M. Fleisch. (Musci). PhD. Thesis, University of Missouri, St. Louis.
67. MASON-GAMER, R. J. and E. A. KELLOGG. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
68. MITTEN, W. 1859. Musci Indiae Orientalis; an enumeration of the mosses of the East Indies. Journal of the Proceedings of the Linnaean Society, Supplement to Botany 1: 1-171.
69. MISHLER, B. D. and S. P. CHURCHILL. 1984. A cladistic approach to the phylogeny of bryophytes. Brittonia 36: 406-424.
70. _, L. A. LEWIS, M. A. BUCHHEIM, K. S. RENZAGLIA, D. J. GARBARY, C. F. DELWICHE, F. W. ZECHMAN, T. S. KANTZ and R. L. CHAPMAN. 1994. Phylogenetic relationships of the "green algae" and "bryophytes". Annals of the Missouri Botanical Garden 81: 451-483.
71. MUELLER, M. D. 1973. The Peristome of Fissidens limbatus Sullivant. University of California Publication in Botany 63: 1-34.
72. _ and A. J. NEUMANN. 1988. Peristome structure and the regulation of spore release in arthrodontous mosses. Advances Bryology 3: 135-158.
73. NEWTON, A. E., C. J. COX, J. G. DUCKETT, J. A. WHEELER, B. GOFFINET, A. J. HEDDERSON, and B. D. MISHLER. 2000. Evolution of the major moss lineages: Phylogenetic analysis based on multiple gene sequences and morphology. Bryologist 103: 187-211.
74. NISHIYAMA, T. and M. KATO. 1999. Molecular phylogenetic analysis among bryophytes and tracheophytes based on combined data of plastid coded genes and the 18S rRNA gene. Molecular Biology and Evolution 16: 1027-1036.
75. NORRIS, D. H. 1981. Diphyscium chiapense, a new species from southern Mexico. Bryologist 84: 375-378.
76. _ 1994. Subclass Buxbaumiidae. Pp. 1067-1069 in Tile Moss Flora of Mexico, eds. A. J. Sharp, H. Crum and P. M. Eckel. New York: New York Botanic Gardens.
77. NYHOLM, E. 1989. Illustrated Flora of Nordic mosses. Fasc. 2. Pottiaceae - Splachnaceae - Schistostegaceae. Nordic Bryology Society, Lund.
78. PAIS, M. S. 1964. Sur le mouvement du péristome des mousses et les conidions climatiques. Revista Biologia (Lisboa) 5: 239-250.
79. RAMBAUT, A. 1996. Sequence Alignment Editor ver. 1.0, Department of Zoology Oxford University, Oxford.
80. SAITO, K. 1975. A monograph of Japanese Pottiaceae (Musci). Journal of the Hattori Botanical Laboratory 39: 373-537.
81. _ and S. SCHIMOZE. 1954. Studies on the development of the peristome in Bartramia crispa Schimp. Botanical Magazine, Tokyo 68: 55-60.
82. SCHIMPER, W. P. 1855. Corollarium Bryologiae Europaeae, Conspectum Diagnosticum Familiarum, Generum et Specierum, Adnotationes Novas atque Emendationes. Schwaizerbart, Sttugartiae.
83. SCHOFIELD, W. B. 1985. Introduction to Bryology. MacMillan, New York.
84. SCHWARTZ, O. M. 1991. A History of Developmental Studies of Peristomes. Evansia 8: 57-73.
85. _ 1994. The development of the peristome-forming layers in the Funariaceae. International Journal of Plant Science 155: 640-657.
86. SHAW, A. J. and L. E. ANDERSON. 1988. Peristome development in mosses in relation to systematics and evolution II. Tetraphis pellucida (Tetraphidaceae). American Journal of Botany 75: 1019-1032.
87. _, _, and B. D. MISHLER. 1987. Peristome development in mosses in relation to systematics and evolution 1. Diphyscium foliosum (Diphysciaceae). Memoirs of the New York Botanical Garden 45: 55-70.
88. _, _, and _ 1989a. Peristome development in mosses in relation to systematics and evolution III. Funaria hygrometrica, Bryum pseudocapillare, and B. bicolor. Systematic Botany 14: 24-36.
89. _, _, and _ 1989b. Peristome development in mosses in relation to systematics and evolution IV. Haplolepideae: Ditrichaceae and Dicranaceae. Bryologist 92: 314-323.
90. _, and H. ROBINSON. 1984. On the development, evolution, and function of peristome in mosses. Journal of the Hattori Botanical Laboratory 57: 319-335.
91. _ and J. R. ROHRER. 1984. Endostomial architecture in diplolepideous Mosses. Journal of the Hattori Botanical Laboratory 57: 41-61.
92. SIEGEL, S. 1956. Nonparametric Statistics for the Behavioral Sciences. New York: McGraw-Hill.
93. SMITH, G. L. 1971. Conspectus of the genera of Polytrichaceae. Memoirs of the New York Botanical Garden 21: 1-83.
94. _ 1974. New developments in the taxonomy of Polytrichaceae: epiphragm structure and spore morphology as generic characters. Journal of the Hattori Botanical Laboratory 38: 143-150.
95. SOUZA-CHIES, T. T., G. BITTAR, S. NADOT, L. CARTER, E. BESIN and B. LEJEUNE. 1997. Phylogenetic analysis of Iridaceae with parsimony and distance method using the plastid gene rps4. Plant Sysematics and Evolution 204: 109-123.
96. STEINBRINK, K. 1897. Der hygroskopische mechanismus des Laubmoosperistoms. Flora 84: 131-158.
97. SWOFFORD, D. L. 1999. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods) Version 4. Sinauer Associates, Sunderland, MA.
98. TABERLET, P., L. GIELLY, G. PAUTOU and J. BOUVET. 1991. Universal primers for the amplification of three non coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
99. TAYLOR, E. C. 1962. The Philibert peristome articles. An abridged translation. Bryologist 65: 175-121.
100. TEMPLETON, A. R. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37: 221-244.
101. THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL. Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
102. VAN DER WIJK, R. 1929. Ueber den Bau die Entwicklug der Peristomzähne bei Polytrichum. Recueil des Travaux Botaniques Neerlandais 26: 289-395.
103. VAN ZANTEN, B. O. 1973. A taxonomic revision of the genus Dawsonia R. Brown. Lindbergia 2: 1-48.
104. VITT, D. H. 1981. Adaptive modes of moss sporophyte. Bryologist 84: 166-186.
105. _ 1984. Classification of the Bryopsida. Pp. 696-759 in New Manual of Bryology, Vol. 2, ed. R. M. Schuster. Nichinan: Hattori Botanical Laboratory.
106. _ and C. H. HAMILTON. 1974. A scanning electron microscope study of the spores and selected peristomes of the North American Encalyptaceae (Musci). Canadian Journal of Botany 52: 1973-1981.
107. _, B. GOFFINET and T. HEDDERSON. 1998. The ordinal classification of the mosses: questions and answers for the 1990s. Pp. 113-123 in Bryology for the Twenty-First Century, eds. J. W. Bates, N. W. Ashton, and J. G. Duckett. Leeds: Maney Publishing and British Bryological Society.
108. WANSTALL, P. J. 1950. Mucilage hairs in Polytrichum. Transactions of the British Bryological Society 1: 349-352.
109. WENDEROTH, H. 1931. Beiträge zur Kentnis des Sporophyten von Polytrichum juniperinum. Willdenow. Planta 14: 244-385.
110. WENDEL J. F. and J. J. DOYLE. 1998. Phylogenetic incongruence: Window into genome history and molecular evolution. Pp. 265-296 in Molecular Systematics of Plants II, DNA Sequencing. Eds. D. E. Soltis, P. S. Soltis and J. J. Doyle. 1998. New York: Kluwer.
111. WOLF, P. G., P. S. SOLTIS, and D. E. SOLTIS, 1994. Phylogenetic relationships of Dennstaedtioid ferns: Evidence from rbcL sequences. Molecular Phylogenetics and Evolution 3: 383-392.